|
0
|
1 <tool id="dna_protein_transle" name="Translate DNA to protein" version="1.0">
|
|
|
2 <description>Translate nucleic acid to protein </description>
|
|
|
3 <requirements>
|
|
|
4 <requirement type="package" version="1.69">biopython</requirement>
|
|
|
5 <requirement type="python-module">Bio</requirement>
|
|
|
6 </requirements>
|
|
|
7 <command interpreter="python" >
|
|
|
8 translate.py -i $dna -o $output -r $read_frame
|
|
|
9 </command>
|
|
|
10 <inputs>
|
|
|
11 <param name="dna" type="data" format="fasta" label="DNA fasta file" help="DNA fasta file" />
|
|
|
12 <param name="read_frame" type="select" label="Choose a read frame">
|
|
|
13 <option value="1">1</option>
|
|
|
14 <option value="2">2</option>
|
|
|
15 <option value="3">3</option>
|
|
|
16 <option value="-1">-1</option>
|
|
|
17 <option value="-2">-2</option>
|
|
|
18 <option value="-3">-3</option>
|
|
|
19 </param>
|
|
|
20 </inputs>
|
|
|
21 <outputs>
|
|
|
22 <data name="output" type="data" format="fasta"/>
|
|
|
23 </outputs>
|
|
|
24 <tests>
|
|
|
25 <test>
|
|
|
26 <param name="dna" file="demo_nucs.fasta" />
|
|
|
27 <param name="read_frame" type="select" value="1" />
|
|
|
28 <output name="output" file="demo_protein.fasta" />
|
|
|
29 </test>
|
|
|
30 </tests>
|
|
|
31 </tool>
|
