diff translate.xml @ 0:a55eb751d2d8 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/translate.xml	Tue May 09 13:09:07 2017 -0400
@@ -0,0 +1,31 @@
+<tool id="dna_protein_transle" name="Translate DNA to protein" version="1.0">
+    <description>Translate nucleic acid to protein </description>
+    <requirements>
+        <requirement type="package" version="1.69">biopython</requirement>
+        <requirement type="python-module">Bio</requirement>
+    </requirements>
+    <command interpreter="python" >
+        translate.py -i $dna -o $output -r $read_frame
+    </command>
+    <inputs>
+        <param name="dna" type="data" format="fasta" label="DNA fasta file" help="DNA fasta file" />
+        <param name="read_frame" type="select" label="Choose a read frame">
+          <option value="1">1</option>
+          <option value="2">2</option>
+          <option value="3">3</option>
+          <option value="-1">-1</option>
+          <option value="-2">-2</option>
+          <option value="-3">-3</option>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="output" type="data" format="fasta"/>
+    </outputs>
+    <tests>
+        <test>
+            <param name="dna" file="demo_nucs.fasta" />
+            <param name="read_frame" type="select" value="1" />
+            <output name="output" file="demo_protein.fasta" />
+        </test>
+    </tests>
+</tool>