diff PDAUG_Merge_Dataframes/test-data/.ipynb_checkpoints/Untitled1-checkpoint.ipynb @ 0:5bb52d4bf172 draft

"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PDAUG_Merge_Dataframes/test-data/.ipynb_checkpoints/Untitled1-checkpoint.ipynb	Wed Oct 28 01:54:31 2020 +0000
@@ -0,0 +1,89 @@
+{
+ "cells": [
+  {
+   "cell_type": "code",
+   "execution_count": 42,
+   "metadata": {},
+   "outputs": [
+    {
+     "name": "stderr",
+     "output_type": "stream",
+     "text": [
+      "Warning message in read.table(file = file, header = header, sep = sep, quote = quote, :\n",
+      "“incomplete final line found by readTableHeader on '/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv'”\n"
+     ]
+    },
+    {
+     "ename": "ERROR",
+     "evalue": "Error in data[[rowvar]]: attempt to select less than one element in get1index\n",
+     "output_type": "error",
+     "traceback": [
+      "Error in data[[rowvar]]: attempt to select less than one element in get1index\nTraceback:\n",
+      "1. read.csv(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", \n .     sep = \",\", header = TRUE, row.names = \"index\")",
+      "2. read.table(file = file, header = header, sep = sep, quote = quote, \n .     dec = dec, fill = fill, comment.char = comment.char, ...)"
+     ]
+    }
+   ],
+   "source": [
+    "m <- read.csv(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", sep=\",\",header=TRUE, row.names='index')\n",
+    "\n",
+    "\n",
+    "m <- as.matrix(read.table(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", sep=\",\", header=TRUE, row.names='index')[, 1:4])"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 38,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "library(igraph)"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": 40,
+   "metadata": {},
+   "outputs": [
+    {
+     "ename": "ERROR",
+     "evalue": "Error in mde(x): 'list' object cannot be coerced to type 'double'\n",
+     "output_type": "error",
+     "traceback": [
+      "Error in mde(x): 'list' object cannot be coerced to type 'double'\nTraceback:\n",
+      "1. graph.adjacency(m, mode = \"undirected\", weighted = TRUE)",
+      "2. graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted, \n .     diag = diag)",
+      "3. `mode<-`(`*tmp*`, value = \"double\")"
+     ]
+    }
+   ],
+   "source": [
+    "m <- as.matrix(read.table(\"out_1.csv\", sep=\",\", header=TRUE, row.names='index')[, 1:4])"
+   ]
+  },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": []
+  }
+ ],
+ "metadata": {
+  "kernelspec": {
+   "display_name": "R",
+   "language": "R",
+   "name": "ir"
+  },
+  "language_info": {
+   "codemirror_mode": "r",
+   "file_extension": ".r",
+   "mimetype": "text/x-r-source",
+   "name": "R",
+   "pygments_lexer": "r",
+   "version": "4.0.0"
+  }
+ },
+ "nbformat": 4,
+ "nbformat_minor": 2
+}