Mercurial > repos > jay > pdaug_merge_dataframes
annotate PDAUG_Merge_Dataframes/test-data/.ipynb_checkpoints/Untitled1-checkpoint.ipynb @ 0:5bb52d4bf172 draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
author | jay |
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date | Wed, 28 Oct 2020 01:54:31 +0000 |
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5bb52d4bf172
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
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1 { |
5bb52d4bf172
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2 "cells": [ |
5bb52d4bf172
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3 { |
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4 "cell_type": "code", |
5bb52d4bf172
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5 "execution_count": 42, |
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6 "metadata": {}, |
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7 "outputs": [ |
5bb52d4bf172
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8 { |
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9 "name": "stderr", |
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10 "output_type": "stream", |
5bb52d4bf172
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11 "text": [ |
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12 "Warning message in read.table(file = file, header = header, sep = sep, quote = quote, :\n", |
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13 "“incomplete final line found by readTableHeader on '/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv'”\n" |
5bb52d4bf172
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14 ] |
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15 }, |
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16 { |
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17 "ename": "ERROR", |
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18 "evalue": "Error in data[[rowvar]]: attempt to select less than one element in get1index\n", |
5bb52d4bf172
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19 "output_type": "error", |
5bb52d4bf172
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20 "traceback": [ |
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21 "Error in data[[rowvar]]: attempt to select less than one element in get1index\nTraceback:\n", |
5bb52d4bf172
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22 "1. read.csv(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", \n . sep = \",\", header = TRUE, row.names = \"index\")", |
5bb52d4bf172
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23 "2. read.table(file = file, header = header, sep = sep, quote = quote, \n . dec = dec, fill = fill, comment.char = comment.char, ...)" |
5bb52d4bf172
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24 ] |
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25 } |
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26 ], |
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27 "source": [ |
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28 "m <- read.csv(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", sep=\",\",header=TRUE, row.names='index')\n", |
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29 "\n", |
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30 "\n", |
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31 "m <- as.matrix(read.table(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", sep=\",\", header=TRUE, row.names='index')[, 1:4])" |
5bb52d4bf172
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32 ] |
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33 }, |
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34 { |
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35 "cell_type": "code", |
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36 "execution_count": 38, |
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37 "metadata": {}, |
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38 "outputs": [], |
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39 "source": [ |
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40 "library(igraph)" |
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41 ] |
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42 }, |
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43 { |
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44 "cell_type": "code", |
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45 "execution_count": 40, |
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46 "metadata": {}, |
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47 "outputs": [ |
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48 { |
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49 "ename": "ERROR", |
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50 "evalue": "Error in mde(x): 'list' object cannot be coerced to type 'double'\n", |
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51 "output_type": "error", |
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52 "traceback": [ |
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53 "Error in mde(x): 'list' object cannot be coerced to type 'double'\nTraceback:\n", |
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54 "1. graph.adjacency(m, mode = \"undirected\", weighted = TRUE)", |
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55 "2. graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted, \n . diag = diag)", |
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56 "3. `mode<-`(`*tmp*`, value = \"double\")" |
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57 ] |
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58 } |
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59 ], |
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60 "source": [ |
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61 "m <- as.matrix(read.table(\"out_1.csv\", sep=\",\", header=TRUE, row.names='index')[, 1:4])" |
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62 ] |
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63 }, |
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64 { |
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65 "cell_type": "code", |
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66 "execution_count": null, |
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67 "metadata": {}, |
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68 "outputs": [], |
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69 "source": [] |
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70 } |
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71 ], |
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72 "metadata": { |
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73 "kernelspec": { |
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74 "display_name": "R", |
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75 "language": "R", |
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76 "name": "ir" |
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77 }, |
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78 "language_info": { |
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79 "codemirror_mode": "r", |
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80 "file_extension": ".r", |
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81 "mimetype": "text/x-r-source", |
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82 "name": "R", |
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83 "pygments_lexer": "r", |
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84 "version": "4.0.0" |
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85 } |
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86 }, |
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87 "nbformat": 4, |
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88 "nbformat_minor": 2 |
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89 } |