Mercurial > repos > jay > pdaug_peptide_sequence_analysis

view PDAUG_Merge_Dataframes/PDAUG_Merge_Dataframes.py @ 0:e59674e3a391 draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 6f53ad797ec1af02b41510063a86bec7d121abf3"
author jay
date Fri, 20 Nov 2020 19:47:44 +0000
parents
children b73ba641e514
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import glob
import pandas as pd 
import sys

files = sys.argv[1]
out_file = sys.argv[2]


data_frame = pd.read_csv(files.split(',')[0],sep='\t')


for file in files.split(',')[1:]: 

    df1 = pd.read_csv(file,sep='\t')
    data_frame =  pd.concat([data_frame,df1])

final_DF = data_frame.fillna(0)

final_DF.to_csv(out_file,sep="\t", index=False)