Mercurial > repos > jeremie > package_pindel_0_2_5
comparison tool_dependencies.xml @ 5:4e8cf8b6b572 draft
Uploaded
| author | jeremie |
|---|---|
| date | Thu, 19 Jun 2014 09:14:25 -0400 |
| parents | 8bd563e15467 |
| children | 3f6014ca8e19 |
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| 4:8bd563e15467 | 5:4e8cf8b6b572 |
|---|---|
| 5 </package> | 5 </package> |
| 6 <package name="pindel" version="0.2.5"> | 6 <package name="pindel" version="0.2.5"> |
| 7 <install version="1.0"> | 7 <install version="1.0"> |
| 8 <actions> | 8 <actions> |
| 9 <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action> | 9 <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action> |
| 10 <action type="shell_command">cd pindel</action> | 10 <!-- <action type="shell_command">cd pindel</action> |
| 11 <action type="shell_command">make SAMTOOLS=~/samtools</action> | 11 <action type="shell_command">make SAMTOOLS=~/samtools</action> --> |
| 12 <action type="set_environment"> | 12 <action type="set_environment"> |
| 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 14 </action> | 14 </action> |
| 15 </actions> | 15 </actions> |
| 16 </install> | 16 </install> |