|
4
|
1 <?xml version="1.0"?>
|
|
|
2 <tool_dependency>
|
|
|
3 <package name="samtools" version="0.1.18">
|
|
|
4 <repository changeset_revision="171cd8bc208d" name="package_samtools_0_1_18" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" />
|
|
|
5 </package>
|
|
|
6 <package name="pindel" version="0.2.5">
|
|
|
7 <install version="1.0">
|
|
|
8 <actions>
|
|
|
9 <action type="download_by_url">https://github.com/genome/pindel/archive/master.zip</action>
|
|
5
|
10 <!-- <action type="shell_command">cd pindel</action>
|
|
|
11 <action type="shell_command">make SAMTOOLS=~/samtools</action> -->
|
|
4
|
12 <action type="set_environment">
|
|
|
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
|
|
|
14 </action>
|
|
|
15 </actions>
|
|
|
16 </install>
|
|
|
17 <readme>
|
|
|
18 </readme>
|
|
|
19 </package>
|
|
|
20 </tool_dependency>
|
