comparison tool_dependencies.xml @ 0:1f0c4f0a9c3b draft

Initial version of SPAN for ToolShed

0:1f0c4f0a9c3b

<?xml version="1.0"?>
<tool_dependency>
    <!--
    Package for downloading latest successful development tools.
    https://galaxyproject.org/toolshed/tool-dependencies-tag-sets/
    -->
    <package name="package_span_jar" version="0.7.1.4272" prior_installation_required="True">
        <install version="1.0">
            <actions>
                <action type="download_by_url">https://download.jetbrains.com/biolabs/span/span-0.7.1.4272.jar</action>
                <action type="move_directory_files">
                    <source_directory>.</source_directory>
                    <destination_directory>$INSTALL_DIR/</destination_directory>
                </action>
                <!-- Set environment variable $INTEGRATION_JAR so Python script knows where to look -->
                <action type="set_environment">
                    <environment_variable name="$SPAN_JAR" action="set_to">$INSTALL_DIR/span-0.7.1.4272.jar</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
            Downloads SPAN Semi-supervised Peak Analyzer jar distribution file.
        </readme>
    </package>
</tool_dependency>