Mercurial > repos > jhliu > fastq_c2t
view fastq_c2t.py @ 0:1dd7e185e9b9 draft default tip
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author | jhliu |
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date | Thu, 03 Jun 2021 05:09:43 +0000 |
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#!/usr/bin/env python import sys import os import getopt from Bio import SeqIO opts,args=getopt.getopt(sys.argv[1:],"i:h") for op,value in opts: if op == "-i": file = value elif op == "-h": sys.exit() with open(file,'r') as input: line = input.readline() i = 0 while (line): if i == 0: print line.strip("\n") i += 1 elif i == 1: print line.strip("\n").replace("C","T") i += 1 elif i == 2: print line.strip("\n") i +=1 elif i == 3: print line.strip("\n") i = 0 line = input.readline()