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1 #!/usr/bin/env python
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2 import sys
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3 import os
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4 import getopt
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5 from Bio import SeqIO
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6
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7 opts,args=getopt.getopt(sys.argv[1:],"i:h")
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8 for op,value in opts:
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9 if op == "-i":
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10 file = value
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11 elif op == "-h":
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12 sys.exit()
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13
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14 with open(file,'r') as input:
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15 line = input.readline()
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16 i = 0
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17 while (line):
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18 if i == 0:
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19 print line.strip("\n")
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20 i += 1
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21 elif i == 1:
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22 print line.strip("\n").replace("C","T")
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23 i += 1
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24 elif i == 2:
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25 print line.strip("\n")
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26 i +=1
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27 elif i == 3:
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28 print line.strip("\n")
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29 i = 0
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30 line = input.readline() |
