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1 #!/usr/tmp/bin/python2.7
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2
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3
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4 import weblogolib
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5 from corebio.utils.deoptparse import DeOptionParser
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6 import sys
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7
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8
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9 #setup
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10 def blackboxcodonl(inputf,outputf):
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11 parser = weblogolib._build_option_parser()
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12
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13 (opts, args) = parser.parse_args(['--size', 'large', '--composition', 'none', '--fin',inputf,'--fout', outputf])
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14
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15
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16 if args : parser.error("Unparsable arguments: %s " % args)
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17 #best not to change anything in the try except block.
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18 try:
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19 data = weblogolib._build_logodata(opts)
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20 format = weblogolib._build_logoformat(data, opts)
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21 formatter = opts.formatter
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22 formatter(data, format, opts.fout)
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23 except ValueError, err :
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24 print >>sys.stderr, 'Error:', err
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25 sys.exit(2)
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26 except KeyboardInterrupt, err:
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27 sys.exit(0)
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28
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29 blackboxcodonl('/home/david/examples/cluster17.aln',"outfile.eps")
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