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annotate rnaseq/cutadapt/test-data/maf_thread_for_species.dat @ 13:1efd1975a68d

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cutadapters sample added
author jjkoehorst <jasperkoehorst@gmail.com>
date Sat, 21 Feb 2015 16:58:00 +0100
parents a712b378e090
children
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11
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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1 ##maf version=1
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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2 a score=0.0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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3 s hg17.chr7 127471195 676 + 158628139 gtttgccatcttttgctgctctagggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTAAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGGTATGAAAACATCCACTAAAATTTGTGGTTTATTCATTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGGGAGATATTTGGggaaattttgtatagactagctttcacgatgttagggaattattattgtgtgataatggtcttgcagttacacagaaattcttccttattttttgggaagcaccaaagtagggataaaatgtcatgatgtgtgcaatacactttaaaatgtttttgccaaaataattaatgaagcaaatatggaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaatttttcatttaaaaa
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
4 s panTro1.chr6 129885076 676 + 161576975 gtttgccatcttttgctgctcttgggaatccagcagctgtcaccatgtaaacaagcccaggctagaccaGTTACCCTCATCATCTTAGCTGATAGCCAGCCAGCCACCACAGGCAtgagtcaggccatattgctggacccacagaattatgagctaaataaatagtcttgggttaagccactaagttttaggcatagtgtgttatgtaTCTCACAAACATATAAGACTGTGTGTTTGTTGACTGGAGGAAGAGATGCTATAAAGACCACCTTTTGAAACTTCCCAAATACTGCCACTGATGTCCTGATGGAGGTATGAAAACATCCACTAAAATTTGTGGTTTATTCGTTTTTCATTATTTTGTTTAAGGAGGTCTATAGTGGAAGAGGGAGACATTTGGggaaattttgtatagactagctttcacgatgttagggagttattattgtgtgataatggtcttgcagttacacagaaattcttccttattttttgggaaacaccaaagtagggataaaatgtcatgatgtgtgcaatacgctttaaaatatttttgccaaaataattaatgaagcaaatatggaaaataataattattaaatctaggtgatgggtatattgtagttcactatagtattgcacacttttctgtatgtttaaaattttcatttaaaaa
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
5
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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6 a score=0.0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
7 s hg17.chr7 127471872 375 + 158628139 ctttgagctagacaccaggctatgagctaggagcatagcaatgaccaaatagactcctaccaactcaaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACCTGTGTGATCCTGGCTTTTCCTGTTCCCTCCGCATCATCACTGCAGGTGTGTTTTCCCAAGTTTTAAACATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGTACATGAATATAACACATAACAAAAATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaattttccctgggcacccatgtgttcttggcactggaaaagtaccggga
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
8 s panTro1.chr6 129885753 375 + 161576975 ctttgagctagacaccaggctatgagctaggagcatagcaatgaccaaatagactcctaccaactcaaagaatgcacattctCTGGGAAACATGTTTCCATTAGGAAGCCTCGAATGCAATGTGACTGTGGTCTCCAGGACATGTGTGATCCTGGCTTTTCCTGTTCCCTCTGCATCATCACTGCAGGTGTATTTTCCCAAGTTTTAAACATTTACCTTCCCAGTGGCCTTGCGTCTAGAGGAATCCCTGTATAGTGGTACATGAATATAACACATAACAAAAATCATCTCTATGGTGTGTGTTGTTCCTGGGGTTCAattcagcaaatttttcctgggcacccatgtgttcttggcactggaaaagtaccggga
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
9
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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10 a score=0.0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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11 s hg17.chr7 127472258 423 + 158628139 gatggcccaatccctgtcctcttaaaacctaagggaggagaTGGAAAGGGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTAAGGATGGAGAGGCCCTAGTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCACAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTGCAATGTATGTGTGTTCCCTGGTTcaagggctgggaactttctctaaagggccaggtagaaaacattttaggctttctaagccaaggcaaaattgaggatattacatgggtacttatacaacaagaataaacaatttacacaattttttgttgacagaattcaaaactttatagacacagaaatgcaaatttcctgt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
12 s panTro1.chr6 129886139 423 + 161576975 gatggcccaatccctgtcctcttaaaacctaagggaggagaTGGAAAGGGGCACCCAACCCAGACTGAGAGACAGGAATTAGCTGCAAGGGGAACTAGGAAAAGCTTCTTTAAGGATGGAGAGACCCTAGTGGAATGGGGAGATTCTTCCGGGAGAAGCGATGGATGCGCAGTTGGGCATCCCCACAGACGGACTGGAAAGAAAAAAGGCCTGGAGGAATCAATGTGCAATGTATGTGTGTTCCCTGGTTcaagggctgggaactttctctaaagggccaggtagaaaacattttaggctttctaagccaaggcaaaattgaggatattacatgggtacttatacaacaagaataaacaatttacacaattttttgttgacagaattcaaaactttatagacacagaaatgtaaatttcctgt
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
13
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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14 a score=0.0
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
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15 s hg17.chr7 127473809 428 + 158628139 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtggcaggctcggttcaccaacgtcatttgcagttccccgCTTTATGTTATGGgttttgttttgttttgtttttttt-attgagacagagtttcactcttgttgcccaggctgtagtgcaatggtctgatcttggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcaccatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggct
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
16 s panTro1.chr6 129887686 415 + 161576975 tttttttttcaaacttttacaaatgtagaaaccattcttagcttttgggcattaccaaacccggcagtggAAGGCTCGGTTCACCAACATCATTTGCAGTTCCCCGCTTTATATTATGGGttttttttttttttttttttttttattgagacagagtttcactcttgttgcccaggctgtagtg--------------tggctcactgcaacctccacttcccaggttcaagccattctcctgcctcagcctctcaagtagctgggattacagacactcaccaccacacctggctaattttgtatttttagtagagatgaggtttcatcatgttggccaggctggtctcgaaatcctgacctcaggtgatccacccaccttggcctcccaaagtgctgggattacaggcttgagctaccacgcctggct
a712b378e090 cutadapt added
jjkoehorst <jasperkoehorst@gmail.com>
parents:
diff changeset
17