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1 # Sun Oct 4 18:40:32 2009 /share/apps/corona/bin/filter_fasta.pl --output=/data/results/solid176/solid176_20090923/Somali_Wild_Ass_a/results.01/primary.20091004212559515 --name=solid176_20090923_Somali_Wild_Ass_a --tag=F3 --minlength=50 --mincalls=25 --prefix=T /data/results/solid176/solid176_20090923/Somali_Wild_Ass_a/jobs/postPrimerSetPrimary.1062/rawseq
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2 # Cwd: /state/partition1/home/pipeline
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3 # Title: solid176_20090923_Somali_Wild_Ass_a
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4 >853_7_53_F3
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5 T..02.1120..22.2..230.22.3..033212.1.1....2221...12
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6 >853_7_78_F3
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7 T..13.2222..22.2..222.22.2..222212.2.2....2222...22
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8 >853_7_88_F3
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9 T..23.2221..13.2..033.30.1..010220.1.2....2222...22
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10 >853_7_132_F3
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11 T..22.2032..32.2..222.22.2..222222.2.2....2222...22
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12 >853_7_141_F3
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13 T..22.2112..10.2..221.02.1..220112.0.2....0222...22
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14 >853_7_146_F3
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15 T..12.1011..21.2..213.22.2..222222.2.2....2222...22
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16 >853_7_269_F3
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17 T..12.2222..22.2..222.22.2..222222.2.2....2222...22
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18 >853_7_321_F3
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19 T..20.2322..21.3..222.12.1..120012.3.0....2000...22
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20 >853_7_386_F3
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21 T..12.2302..20.2..231.12.0..200232.3.2....0002...22
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22 >853_7_405_F3
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23 T..21.0221..31.2..000.23.2..020022.0.2....0313...12
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24 >853_7_411_F3
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25 T..10.2000..33.2..022.02.0..200222.2.0....0000...00
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26 >853_7_445_F3
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27 T..30.3210..01.1..120.11.3..301222.1.2....3222...22
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28 >853_7_469_F3
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29 T..22.0102..20.3..200.21.0..002202.2.2....0203...02
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30 >853_7_474_F3
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31 T..30.1122..22.3..111.21.3..222020.2.2....2203...23
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32 >853_7_497_F3
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33 T..10.0200..22.1..112.03.0..100121.2.2....3132...21
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34 >853_7_587_F3
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35 T..22.2022..01.2..323.23.0..323322.1.1....2212...20
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36 >853_7_630_F3
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37 T..13.0022..11.1..213.10.0..031113.3.3....1112...20
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38 >853_7_655_F3
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39 T..01.0023..02.2..301.32.3..232113.2.2....2222...22
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40 >853_7_692_F3
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41 T..00.0122..02.3..230.21.2..301213.2.1....1122...22
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42 >853_7_715_F3
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43 T..00.0213..21.3..131.12.0..202011.1.0....0221...22
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44 >853_7_719_F3
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45 T..00.2231..02.0..122.13.0..003022.0.1....1010...02
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46 >853_7_743_F3
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47 T..11.0201..00.1..303.01.1..021332.3.3....3223...23
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48 >853_7_791_F3
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49 T..20.3311..03.2..301.01.2..122002.2.1....3123...21
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50 >853_7_801_F3
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51 T..00.0323..21.1..112.23.3..132022.2.1....2122...22
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52 >853_7_845_F3
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53 T..01.3303..01.1..102.03.1..222102.0.0....0231...12
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54 >853_7_868_F3
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55 T..31.3103..12.1..211.32.2..223200.2.3....1031...21
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56 >853_7_1026_F3
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57 T..22.3032..03.3..110.32.3..212230.3.0....1111...13
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58 >853_7_1057_F3
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59 T..30.3112..22.2..132.21.0..332122.2.2....2220...32
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60 >853_7_1066_F3
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61 T..01.1122..00.0..131.32.0..230030.3.3....2000...30
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62 >853_7_1107_F3
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63 T..20.0301..13.2..003.10.0..300221.2.1....3300...32
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64 >853_7_1179_F3
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65 T..02.3301..32.0..310.03.3..312300.3.3....1320...03
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66 >853_7_1198_F3
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67 T..32.2203..31.2..111.13.1..312322.2.2....1103...22
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68 >853_7_1261_F3
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69 T..20.3233..32.2..223.22.3..232033.2.3....0322...23
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70 >853_7_1321_F3
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71 T..00.0321..22.2..100.11.1..120210.0.2....2211...02
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72 >853_7_1406_F3
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73 T..13.0310..13.2..031.32.0..002230.0.2....0231...11
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74 >853_7_1431_F3
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75 T..11.0032..21.1..310.00.0..321021.0.2....3030...02
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76 >853_7_1439_F3
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77 T..20.0132..13.1..212.32.2..222110.3.0....2132...22
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78 >853_7_1524_F3
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79 T..20.1110..13.3..201.33.3..320121.1.3....3321...20
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80 >853_7_1537_F3
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81 T..12.1030..02.0..011.30.1..111200.0.3....2033...11
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82 >853_7_1592_F3
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83 T..21.3233..02.1..000.22.0..121233.3.1....3223...22
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84 >853_7_1597_F3
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85 T..12.3100..33.0..312.02.1..000000.3.1....1100...00
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86 >853_7_1650_F3
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87 T..00.2212..12.1..203.13.3..102012.0.2....3333...30
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88 >853_7_1790_F3
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89 T..23.1021..32.0..130.13.0..012301.0.1....0001...10
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90 >853_7_1795_F3
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91 T..22.2123..01.0..222.31.3..233211.0.1....2312...03
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92 >853_7_1807_F3
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93 T..03.0310..02.3..121.20.1..333122.3.1....0302...12
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94 >853_7_1872_F3
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95 T..01.2331..12.2..200.02.3..302232.3.1....1203...23
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96 >853_7_1885_F3
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97 T..10.3010..11.2..331.21.2..230213.1.3....0132...32
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98 >853_7_1910_F3
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99 T..11.1002..20.1..000.20.1..111022.2.0....3311...23
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100 >853_8_43_F3
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101 T..32100023203.2..110.31.120321022.100.1.11202..211
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102 >853_8_48_F3
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103 T..21122022323.1..222.32.020211202.222.2.20222..222
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104 >853_8_57_F3
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105 T..23231203232.2..212.22.222222232.222.2.22222..222
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106 >853_8_106_F3
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107 T..23112221210.3..001.02.032222322.212.2.22222..220
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108 >853_8_196_F3
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109 T..00233022111.0..002.20.021222222.020.0.22222..222
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110 >853_8_211_F3
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111 T..20112122111.2..112.22.220222212.122.0.21222..222
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112 >853_8_227_F3
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113 T..10201100320.2..302.10.312330220.312.2.02221..221
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114 >853_8_248_F3
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115 T..21312120022.0..122.22.222222232.222.2.23222..222
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116 >853_8_253_F3
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117 T..21322103032.2..222.22.222222222.222.2.22222..222
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118 >853_8_342_F3
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119 T..13021033322.2..301.32.230300120.122.0.02112..223
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120 >853_8_400_F3
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121 T..22033300003.2..212.31.222123211.122.0.22023..221
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122 >853_8_422_F3
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123 T..01111020122.2..201.22.120231110.221.2.22212..222
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124 >853_8_555_F3
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125 T..02332301011.0..112.00.033000312.302.3.13300..023
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126 >853_8_638_F3
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127 T..00113230133.1..100.22.131113302.011.1.20020..320
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128 >853_8_735_F3
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129 T..00011213121.3..001.11.003311000.222.0.22003..303
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130 >853_8_888_F3
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131 T..02110321212.0..222.12.220011220.032.1.02322..333
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132 >853_8_893_F3
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133 T..00112301113.2..023.21.002311320.100.3.21200..012
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134 >853_8_898_F3
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135 T..33330033033.3..022.31.223030333.212.1.01232..322
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136 >853_8_920_F3
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137 T..02321113231.0..302.30.010200220.321.0.01122..130
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138 >853_8_958_F3
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139 T..03321221220.3..021.12.001030231.030.3.21222..222
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140 >853_8_1076_F3
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141 T..22322100313.1..102.12.332320213.211.0.13003..112
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142 >853_8_1081_F3
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143 T..10030322221.2..000.20.002012320.222.2.21001..102
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144 >853_8_1134_F3
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145 T..33002312331.0..101.03.213221112.000.3.03233..123
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146 >853_8_1157_F3
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147 T..00333123321.1..100.11.112120200.230.0.21203..230
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148 >853_8_1173_F3
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149 T..30202112233.3..320.02.123012201.311.2.32000..122
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150 >853_8_1215_F3
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151 T..22310320211.2..131.10.232003230.102.2.11010..031
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152 >853_8_1223_F3
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153 T..10222220120.1..111.11.123301223.133.3.22333..111
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154 >853_8_1229_F3
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155 T..10011030332.0..200.31.312001011.220.1.11010..131
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156 >853_8_1234_F3
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157 T..33303001323.3..211.32.311201012.323.1.21333..221
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158 >853_8_1255_F3
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159 T..31322212222.0..003.20.121221012.212.2.03220..230
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160 >853_8_1315_F3
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161 T..32221201122.2..223.33.132223100.221.0.20222..232
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162 >853_8_1372_F3
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163 T..02101130220.1..113.23.121310222.233.3.12203..310
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164 >853_8_1461_F3
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165 T..00011120113.3..213.01.030001322.203.2.32222..222
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166 >853_8_1475_F3
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167 T..21310212220.3..100.02.122303121.002.3.12213..213
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168 >853_8_1567_F3
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169 T..02200001131.3..311.10.132232122.322.1.23023..002
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170 >853_8_1662_F3
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171 T..02221200121.2..022.10.310222220.231.2.12011..003
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172 >853_8_1669_F3
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173 T..23233312111.0..213.12.133322002.221.1.11110..113
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174 >853_8_1758_F3
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175 T..12201012113.2..001.10.100122000.000.2.00000..220
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176 >853_8_1764_F3
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177 T..11002002020.2..110.31.120112122.132.3.33003..102
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178 >853_8_1824_F3
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179 T..03311120021.1..310.13.320330301.220.3.30122..132
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180 >853_8_1835_F3
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181 T..21020321003.3..110.20.000022103.122.1.13220..033
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182 >853_8_1917_F3
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183 T..23111010120.2..232.32.121231102.101.1.21322..222
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184 >853_8_1930_F3
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185 T..31110222033.0..021.11.103010131.300.2.22212..311
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186 >853_8_1938_F3
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187 T..20302201110.2..211.22.132123322.120.1.31210..211
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188 >853_8_1984_F3
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189 T..13030120302.0..030.11.202121322.112.1.30000..212
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190 >853_8_2005_F3
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191 T..03113122102.2..101.20.002313003.110.1.01020..001
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192 >853_8_2031_F3
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193 T..22312022312.0..002.22.223022123.001.3.02200...00
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194 >853_9_6_F3
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195 T3222.021.1002.223202.22.222222122.222.2222.22.222.
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196 >853_9_22_F3
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197 T3212221120222.222223.22.222222222.222.2222222.2222
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198 >853_9_70_F3
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199 T1232131203111.331113.12.211213201.221.2221222.2222
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200 >853_9_120_F3
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201 T2030201011012.012222.33.100032000.130.2013202.1222
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202 >853_9_156_F3
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203 T3321020210022.132222.22.222222222.222.2222222.2222
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204 >853_9_189_F3
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205 T2220100322033.222211.00.111112003.313.0212203.2200
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206 >853_9_243_F3
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207 T3312311120013.312312.33.330022332.202.0202222.2222
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208 >853_9_295_F3
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209 T3322303220223.233321.20.002302222.122.2221222.2222
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210 >853_9_299_F3
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211 T2212302322021.122112.23.102311100.121.1012120.0220
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212 >853_9_311_F3
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213 T3002321221310.212333.32.202232132.222.0222221.2222
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214 >853_9_326_F3
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215 T2210200022032.010112.12.121321102.222.1332222.1222
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216 >853_9_451_F3
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217 T1313220202311.230012.31.313200122.100.2111321.2232
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218 >853_9_485_F3
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219 T1012221322221.213211.23.110010113.123.2132121.0222
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220 >853_9_509_F3
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221 T1112203021113.100101.20.031203011.213.2002211.1222
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222 >853_9_538_F3
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223 T2230021213312.123100.00.203202301.223.0112020.3322
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224 >853_9_548_F3
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225 T0132222011033.010321.23.303222223.222.2223322.3322
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226 >853_9_574_F3
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227 T0003331113101.303333.21.213311213.222.2321222.2222
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228 >853_9_589_F3
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229 T3020133021133.203200.02.030202120.123.0113212.0220
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230 >853_9_595_F3
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231 T2221011230111.231023.00.021011112.330.2130120.1203
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232 >853_9_750_F3
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233 T2201102121222.302002.22.221321132.332.2020223.2121
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234 >853_9_783_F3
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235 T2102221003120.330300.21.302010320.231.2133001.1202
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236 >853_9_814_F3
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237 T1200101012011.312003.00.330011010.220.0222213.3122
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238 >853_9_924_F3
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239 T3003021221101.202301.02.111120122.123.1010103.3110
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240 >853_9_1019_F3
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241 T2120212011102.211122.20.210120211.031.1301102.2021
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242 >853_9_1046_F3
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243 T0101121011013.012213.12.122113221.112.0101211.1223
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244 >853_9_1126_F3
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245 T3320221032332.112122.11.232123121.301.1210212.2222
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246 >853_9_1192_F3
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247 T3312212100322.301202.12.020132101.011.1011212.2232
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248 >853_9_1243_F3
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249 T2212213200232.121320.01.323212013.200.0130313.3233
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250 >853_9_1272_F3
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251 T3113210021031.002131.03.130002013.110.2003310.3011
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252 >853_9_1339_F3
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253 T2101230022200.310112.01.133031320.201.3331311.2012
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254 >853_9_1358_F3
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255 T3320111221222.120310.11.230202223.122.0122200.0201
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256 >853_9_1364_F3
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257 T0102331230200.010010.13.233311001.233.1100312.1222
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258 >853_9_1397_F3
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259 T2312020122101.033322.03.022121000.011.0131220.1130
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260 >853_9_1425_F3
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261 T1132332020203.323331.10.133320202.311.3222311.3330
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262 >853_9_1446_F3
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263 T1332212000022.212222.13.021232232.213.1001302.0300
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264 >853_9_1479_F3
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265 T3031333311130.333221.02.122333123.032.2211110.2332
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266 >853_9_1503_F3
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267 T2231320200020.131311.11.232031120.231.0013222.2222
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268 >853_9_1512_F3
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269 T2333032222302.121133.20.001231203.233.3020000.0200
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270 >853_9_1530_F3
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271 T3213220202302.221131.03.120222222.020.1131133.1313
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272 >853_9_1559_F3
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273 T1110111121111.113211.01.310210020.112.1113102.0321
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274 >853_9_1601_F3
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275 T3232030011033.203002.00.123300322.113.0010121.0331
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276 >853_9_1636_F3
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277 T0010012303222.120103.33.330322222.122.3113033.3001
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278 >853_9_1657_F3
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279 T1123103213301.312223.03.133301112.222.1213233.1233
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280 >853_9_1675_F3
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281 T3313013311000.313233.11.112203113.120.2211112.1313
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282 >853_9_1709_F3
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283 T3011001101311.031010.11.000033010.030.2032000.2000
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284 >853_9_1722_F3
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285 T0021012221000.222012.20.202211312.020.3331130.3113
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286 >853_9_1728_F3
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287 T3322221032321.211112.31.012301302.333.0301101.3103
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288 >853_9_1739_F3
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289 T2010003210112.011000.31.320103212.122.2132333.2222
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290 >853_9_1870_F3
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291 T2212303303300.202201.02.333103031.332.0322203.2223
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292 >853_9_1923_F3
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293 T0300322132333.221111.02.233001011.000.1122132.2131
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294 >853_9_1943_F3
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295 T0122230112231.013112.01.202313211.020.2202120.1120
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296 >853_9_1970_F3
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297 T1320210131121.331212.13.233310233.031.1111331.3020
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298 >853_9_2024_F3
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299 T3011020132232.011002.01.230121230.022.2320210.1220
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300 >853_10_26_F3
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301 T3300222111210.212222.22.220222212.222.2221122.2322
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302 >853_10_63_F3
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320 >853_10_464_F3
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332 >853_10_659_F3
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352 >853_10_971_F3
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353 T3300220331100.110110.23.321023321.330.0101321.2221
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354 >853_10_982_F3
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355 T1223223121032.232303.23.022302133.233.3332013.2332
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363 T3000003202132.300013.00.120002011.121.2021010.2012
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376 >853_10_1797_F3
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380 >853_10_2037_F3
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382 >853_11_36_F3
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396 >853_11_436_F3
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410 >853_11_625_F3
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416 >853_11_768_F3
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420 >853_11_794_F3
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428 >853_11_879_F3
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430 >853_11_900_F3
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432 >853_11_930_F3
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433 T0000222120013.020111211.3202200113012.1301232.1111
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434 >853_11_997_F3
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435 T3212210001220.212002102.2112002012100.2131301.0030
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436 >853_11_1002_F3
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438 >853_11_1113_F3
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439 T2000122331220.122030022.0122330113102.2113130.2321
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440 >853_11_1130_F3
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441 T3200012120032.002200332.0031111122002.3312202.0020
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442 >853_11_1160_F3
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443 T2121233002001.210312301.2213313001313.3211202.1232
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444 >853_11_1289_F3
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445 T3202030030000.322322200.2212223121322.1232113.2302
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446 >853_11_1294_F3
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447 T3012121230122.112212223.3101330211122.2332331.2011
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448 >853_11_1308_F3
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450 >853_11_1324_F3
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454 >853_11_1346_F3
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456 >853_11_1352_F3
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457 T3322311331130.202323023.3100113032320.2313223.0312
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458 >853_11_1409_F3
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459 T3000220011111.020033110.2210210002000.2312312.1222
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460 >853_11_1420_F3
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462 >853_11_1517_F3
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472 >853_11_1621_F3
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473 T1100000112201.030113022.0032000002303.3330222.2223
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474 >853_11_1630_F3
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524 >853_12_904_F3
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525 T3213212303022.313222231.0132221322032.2113303.3332
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526 >853_12_937_F3
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527 T0000223011112.023212222.1122101321330.1021310.0111
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528 >853_12_1024_F3
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529 T1123310321001.131333011.1101132121120.1321103.1223
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530 >853_12_1133_F3
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531 T3322011120232.200100233.1000213211000.1300202.0020
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532 >853_12_1138_F3
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533 T3120320131023.003333230.0023011210011.2221222.2122
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534 >853_12_1200_F3
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535 T3310231310102.021130312.1032221320310.3323230.2311
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536 >853_12_1216_F3
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537 T0102231310023.331220320.2302130333302.2232233.3003
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538 >853_12_1258_F3
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539 T1012002321300.200321333.1113322211001.0221102.2003
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542 >853_12_1277_F3
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546 >853_12_1376_F3
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547 T3030320223230.132032232.2221221200220.2133111.1012
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554 >853_12_1525_F3
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564 >853_12_1678_F3
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565 T3222013101022.312110110.1021122231022.1122202.1213
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571 T2212223211313.231233331.0033022201031.0000120.1113
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599 T0030302032002.002300202.0221333220013.0003331.3322
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600 >853_13_396_F3
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601 T0223210101303.230033113.3012132123322.3222222.2322
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602 >853_13_414_F3
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604 >853_13_479_F3
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605 T0032301322021.222001320.0203221022200.0033131.2111
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606 >853_13_531_F3
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607 T3301031311101.221031311.2122220110102.3031313.2121
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608 >853_13_553_F3
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610 >853_13_594_F3
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611 T2012000102023.201011200.0212232221120.2230010.0002
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614 >853_13_638_F3
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615 T3130021123000.023312112.0303100120000.0031212.3210
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618 >853_13_721_F3
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619 T3333230132303.100130302.0233233332233.0030320.1133
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620 >853_13_809_F3
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622 >853_13_850_F3
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624 >853_13_1030_F3
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626 >853_13_1042_F3
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628 >853_13_1092_F3
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629 T0112000212200.122210020.3102222201222.1122222.2222
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630 >853_13_1171_F3
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631 T0223320230220.021233321.2333222302221.0312131.0002
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632 >853_13_1222_F3
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633 T2112021113011.311011302.0231220013331.1311020.0013
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634 >853_13_1226_F3
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635 T2302002311200.321000031.3213001222231.2320023.3321
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636 >853_13_1245_F3
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637 T0313130301321.113221002.2122101210030.0133321.2011
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638 >853_13_1280_F3
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639 T3311003112132.133322131.3233121321313.3002103.2123
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640 >853_13_1306_F3
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642 >853_13_1341_F3
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644 >853_13_1365_F3
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646 >853_13_1443_F3
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647 T2031033110030.011112022.0222013110331.3123310.1203
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648 >853_13_1483_F3
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650 >853_13_1505_F3
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652 >853_13_1606_F3
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654 >853_13_1626_F3
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656 >853_13_1672_F3
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658 >853_13_1784_F3
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660 >853_13_1840_F3
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661 T0103222320012.203013210.1202132132102.1100001.1030
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662 >853_13_1892_F3
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663 T0110000330022.322133222.2220120031001.0111211.3212
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664 >853_13_1911_F3
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666 >853_13_1937_F3
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672 >853_14_65_F3
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674 >853_14_88_F3
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676 >853_14_129_F3
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678 >853_14_191_F3
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680 >853_14_225_F3
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682 >853_14_247_F3
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684 >853_14_273_F3
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686 >853_14_291_F3
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702 >853_14_549_F3
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730 >853_14_1016_F3
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760 >853_14_1447_F3
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770 >853_14_1702_F3
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772 >853_14_1707_F3
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830 >853_15_912_F3
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940 >853_16_892_F3
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|
941 T3321220311213.332101020.231311213111213212011.3011
|
|
942 >853_16_919_F3
|
|
943 T1220221133122.203221113.002222222222222213332.2212
|
|
944 >853_16_941_F3
|
|
945 T3310301301311.011321102.321223223120112231222.1222
|
|
946 >853_16_1040_F3
|
|
947 T3222002222223.332302032.322031103321223221212.3031
|
|
948 >853_16_1049_F3
|
|
949 T1100033003303.021320321.111301320233200033001.0000
|
|
950 >853_16_1063_F3
|
|
951 T1123202211000.302123303.122302023333231103220.1212
|
|
952 >853_16_1081_F3
|
|
953 T0012023221322.322222022.202022222222222222222.2222
|
|
954 >853_16_1142_F3
|
|
955 T2222003033021.112113112.023101132021212223001.1200
|
|
956 >853_16_1155_F3
|
|
957 T3211301033030.010023021.222211203303330033130.0203
|
|
958 >853_16_1188_F3
|
|
959 T3213220312022.213131000.032301320320100303322.3322
|
|
960 >853_16_1231_F3
|
|
961 T0032303211001.310313100.320000200213333000302.3232
|
|
962 >853_16_1285_F3
|
|
963 T1110130123031.110222221.003111112232000001113.1113
|
|
964 >853_16_1300_F3
|
|
965 T0011232200000.110012222.101002200130311033003.0300
|
|
966 >853_16_1391_F3
|
|
967 T3113212223000.101202111.201002121202012103121.1121
|
|
968 >853_16_1397_F3
|
|
969 T2120211222223.012212231.032321102311221213223.3133
|
|
970 >853_16_1528_F3
|
|
971 T1011223130211.130021111.233321321121322131121.1121
|
|
972 >853_16_1574_F3
|
|
973 T2103333220002.302023111.231021311232100032103.1212
|
|
974 >853_16_1593_F3
|
|
975 T1320102033202.110112100.103112112021110222002.2323
|
|
976 >853_16_1653_F3
|
|
977 T0300012120022.111332202.010231221033110201300.2102
|
|
978 >853_16_1698_F3
|
|
979 T3003323013003.033033222.211103000122022112121.1210
|
|
980 >853_16_1746_F3
|
|
981 T3003322312011.031233000.313001220020120330301.1330
|
|
982 >853_16_1806_F3
|
|
983 T3022322013100.301112103.001112221321112001312.2012
|
|
984 >853_16_1821_F3
|
|
985 T2133312220333.203003203.132322202222220113310.1220
|
|
986 >853_16_1842_F3
|
|
987 T2022031201310.230002012.310222131210221100011.0130
|
|
988 >853_16_1853_F3
|
|
989 T2332123123202.112200333.212101231122012220211.2203
|
|
990 >853_16_1871_F3
|
|
991 T1310331222123.031120212.231120302120122222221.2111
|
|
992 >853_16_1887_F3
|
|
993 T3332021100203.001331023.300022222012120111033.1003
|
|
994 >853_16_1919_F3
|
|
995 T3331012121211.303003033.131111320313213223300.0202
|
|
996 >853_16_1924_F3
|
|
997 T1201123330103.233221210.100211100211001133123.1002
|
|
998 >853_16_1982_F3
|
|
999 T0331130320230.220330112.210312121022203321222.2302
|
|
1000 >853_16_2037_F3
|
|
1001 T.13331.12..23.10..2..02.2323120.3.320..10.021.2..1
|