Mercurial > repos > jjkoehorst > sapp

view swisscog.xml @ 35:fa736576c7ed draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload commit 16d0bc526ad02361a7c13231d4c50479c42d8d0f-dirty
author jjkoehorst
date Mon, 04 Jul 2016 10:37:59 -0400
parents
children
line wrap: on
line source

<tool id="DSwissCog" name="Swissprot COG annotation" version="1.0.0">
	<description/>
	<requirements>
		<container type="docker">jjkoehorst/sappdocker:SWISSCOG</container>
	</requirements>
	<command interpreter="docker">java -jar /swisscog/SwissCog-0.0.1-SNAPSHOT-jar-with-dependencies.jar
		-input $input -output $output -format TURTLE
	</command>
	<inputs>
		<param format="ttl" label="genome ttl with orf prediction" name="input" type="data"/>
	</inputs>
	<outputs>
		<data format="ttl" label="SWISSCOG: ${input.name}" name="output"/>
	</outputs>
	<help/>
	<citations/>
</tool>