Mercurial > repos > jjohnson > cdhit
comparison tool_dependencies.xml @ 4:88f9e90d9d78
Fix provided by Bjoern to tool_dependencies.xml to install correctly
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 15 Aug 2014 10:11:31 -0500 |
| parents | cca0838c1597 |
| children |
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| 3:43724ea1c85f | 4:88f9e90d9d78 |
|---|---|
| 3 <package name="cd-hit" version="4.6.1"> | 3 <package name="cd-hit" version="4.6.1"> |
| 4 <install version="1.0"> | 4 <install version="1.0"> |
| 5 <actions> | 5 <actions> |
| 6 <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action> | 6 <action type="download_by_url">https://cdhit.googlecode.com/files/cd-hit-v4.6.1-2012-08-27.tgz</action> |
| 7 <action type="shell_command">make openmp=yes</action> | 7 <action type="shell_command">make openmp=yes</action> |
| 8 <action type="move_file"> | |
| 9 <source>cd-hit</source> | |
| 10 <destination>$INSTALL_DIR</destination> | |
| 11 </action> | |
| 12 <action type="move_file"> | |
| 13 <source>cd-hit-est</source> | |
| 14 <destination>$INSTALL_DIR</destination> | |
| 15 </action> | |
| 8 <action type="set_environment"> | 16 <action type="set_environment"> |
| 9 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> | 17 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> |
| 10 <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000 -T 0"</environment_variable> | 18 <environment_variable name="CDHIT_SITE_OPTIONS" action="set_to">"-M 4000 -T 0"</environment_variable> |
| 11 </action> | 19 </action> |
| 12 </actions> | 20 </actions> |