Mercurial > repos > jjohnson > check_strandedness

annotate test-data/hg38.gtf @ 0:0e1c639fc077 draft default tip

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planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
author jjohnson
date Sat, 08 Oct 2022 17:00:18 +0000
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0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1 chr3 HAVANA transcript 93873033 93974066 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2 chr3 HAVANA exon 93973674 93974066 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 1; exon_id "ENSE00001517824.3"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3 chr3 HAVANA CDS 93973674 93973749 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 1; exon_id "ENSE00001517824.3"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4 chr3 HAVANA start_codon 93973747 93973749 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 1; exon_id "ENSE00001517824.3"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5 chr3 HAVANA exon 93927250 93927407 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 2; exon_id "ENSE00003576677.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
6 chr3 HAVANA CDS 93927250 93927407 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 2; exon_id "ENSE00003576677.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
7 chr3 HAVANA exon 93924240 93924264 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 3; exon_id "ENSE00003552504.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
8 chr3 HAVANA CDS 93924240 93924264 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 3; exon_id "ENSE00003552504.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
9 chr3 HAVANA exon 93910619 93910705 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 4; exon_id "ENSE00003499730.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
10 chr3 HAVANA CDS 93910619 93910705 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 4; exon_id "ENSE00003499730.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
11 chr3 HAVANA exon 93906021 93906143 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 5; exon_id "ENSE00003668418.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
12 chr3 HAVANA CDS 93906021 93906143 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 5; exon_id "ENSE00003668418.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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13 chr3 HAVANA exon 93905784 93905915 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 6; exon_id "ENSE00002341788.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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14 chr3 HAVANA CDS 93905784 93905915 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 6; exon_id "ENSE00002341788.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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15 chr3 HAVANA exon 93900804 93900929 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 7; exon_id "ENSE00002423295.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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16 chr3 HAVANA CDS 93900804 93900929 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 7; exon_id "ENSE00002423295.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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17 chr3 HAVANA exon 93898448 93898569 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 8; exon_id "ENSE00002387482.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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18 chr3 HAVANA CDS 93898448 93898569 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 8; exon_id "ENSE00002387482.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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19 chr3 HAVANA exon 93896576 93896691 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 9; exon_id "ENSE00002343485.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
20 chr3 HAVANA CDS 93896576 93896691 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 9; exon_id "ENSE00002343485.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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21 chr3 HAVANA exon 93892933 93893122 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 10; exon_id "ENSE00001142392.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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22 chr3 HAVANA CDS 93892933 93893122 . - 1 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 10; exon_id "ENSE00001142392.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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23 chr3 HAVANA exon 93886336 93886503 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 11; exon_id "ENSE00002325994.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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24 chr3 HAVANA CDS 93886336 93886503 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 11; exon_id "ENSE00002325994.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
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25 chr3 HAVANA exon 93884728 93884896 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 12; exon_id "ENSE00002400180.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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26 chr3 HAVANA CDS 93884728 93884896 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 12; exon_id "ENSE00002400180.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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27 chr3 HAVANA exon 93879163 93879314 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 13; exon_id "ENSE00002414667.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
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28 chr3 HAVANA CDS 93879163 93879314 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 13; exon_id "ENSE00002414667.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
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29 chr3 HAVANA exon 93876966 93877191 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 14; exon_id "ENSE00002413512.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
30 chr3 HAVANA CDS 93876966 93877191 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 14; exon_id "ENSE00002413512.1"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
31 chr3 HAVANA exon 93873033 93874405 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 15; exon_id "ENSE00001291870.5"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
32 chr3 HAVANA CDS 93874248 93874405 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 15; exon_id "ENSE00001291870.5"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
33 chr3 HAVANA stop_codon 93874245 93874247 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 15; exon_id "ENSE00001291870.5"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
34 chr3 HAVANA UTR 93973750 93974066 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 1; exon_id "ENSE00001517824.3"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
35 chr3 HAVANA UTR 93873033 93874247 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000394236.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-001"; exon_number 15; exon_id "ENSE00001291870.5"; level 2; protein_id "ENSP00000377783.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2923.1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317762.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
36 chr3 HAVANA transcript 93873109 93958754 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
37 chr3 HAVANA exon 93958511 93958754 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 1; exon_id "ENSE00001554593.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
38 chr3 HAVANA exon 93927250 93927407 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 2; exon_id "ENSE00003465799.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
39 chr3 HAVANA exon 93924240 93924264 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 3; exon_id "ENSE00003461233.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
40 chr3 HAVANA exon 93910619 93910705 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 4; exon_id "ENSE00003526781.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
41 chr3 HAVANA exon 93906021 93906143 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 5; exon_id "ENSE00003582467.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
42 chr3 HAVANA CDS 93906021 93906096 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 5; exon_id "ENSE00003582467.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
43 chr3 HAVANA start_codon 93906094 93906096 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 5; exon_id "ENSE00003582467.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
44 chr3 HAVANA exon 93905784 93905915 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 6; exon_id "ENSE00002341788.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
45 chr3 HAVANA CDS 93905784 93905915 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 6; exon_id "ENSE00002341788.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
46 chr3 HAVANA exon 93900804 93900929 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 7; exon_id "ENSE00002423295.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
47 chr3 HAVANA CDS 93900804 93900929 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 7; exon_id "ENSE00002423295.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
48 chr3 HAVANA exon 93898448 93898569 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 8; exon_id "ENSE00002387482.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
49 chr3 HAVANA CDS 93898448 93898569 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 8; exon_id "ENSE00002387482.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
50 chr3 HAVANA exon 93896576 93896691 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 9; exon_id "ENSE00002343485.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
51 chr3 HAVANA CDS 93896576 93896691 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 9; exon_id "ENSE00002343485.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
52 chr3 HAVANA exon 93892933 93893122 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 10; exon_id "ENSE00001142392.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
53 chr3 HAVANA CDS 93892933 93893122 . - 1 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 10; exon_id "ENSE00001142392.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
54 chr3 HAVANA exon 93886336 93886503 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 11; exon_id "ENSE00002325994.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
55 chr3 HAVANA CDS 93886336 93886503 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 11; exon_id "ENSE00002325994.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
56 chr3 HAVANA exon 93884728 93884896 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 12; exon_id "ENSE00002400180.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
57 chr3 HAVANA CDS 93884728 93884896 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 12; exon_id "ENSE00002400180.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
58 chr3 HAVANA exon 93879163 93879314 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 13; exon_id "ENSE00002414667.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
59 chr3 HAVANA CDS 93879163 93879314 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 13; exon_id "ENSE00002414667.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
60 chr3 HAVANA exon 93876966 93877191 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 14; exon_id "ENSE00002413512.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
61 chr3 HAVANA CDS 93876966 93877191 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 14; exon_id "ENSE00002413512.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
62 chr3 HAVANA exon 93873109 93874405 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 15; exon_id "ENSE00001559067.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
63 chr3 HAVANA CDS 93874248 93874405 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 15; exon_id "ENSE00001559067.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
64 chr3 HAVANA stop_codon 93874245 93874247 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 15; exon_id "ENSE00001559067.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
65 chr3 HAVANA UTR 93958511 93958754 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 1; exon_id "ENSE00001554593.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
66 chr3 HAVANA UTR 93927250 93927407 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 2; exon_id "ENSE00003465799.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
67 chr3 HAVANA UTR 93924240 93924264 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 3; exon_id "ENSE00003461233.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
68 chr3 HAVANA UTR 93910619 93910705 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 4; exon_id "ENSE00003526781.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
69 chr3 HAVANA UTR 93906097 93906143 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 5; exon_id "ENSE00003582467.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
70 chr3 HAVANA UTR 93873109 93874247 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000407433.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-002"; exon_number 15; exon_id "ENSE00001559067.1"; level 2; protein_id "ENSP00000385794.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317763.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
71 chr3 HAVANA transcript 93905788 93973862 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
72 chr3 HAVANA exon 93973674 93973862 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 1; exon_id "ENSE00001340393.6"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
73 chr3 HAVANA CDS 93973674 93973749 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 1; exon_id "ENSE00001340393.6"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
74 chr3 HAVANA start_codon 93973747 93973749 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 1; exon_id "ENSE00001340393.6"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
75 chr3 HAVANA exon 93928702 93928797 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 2; exon_id "ENSE00001662236.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
76 chr3 HAVANA CDS 93928702 93928797 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 2; exon_id "ENSE00001662236.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
77 chr3 HAVANA exon 93927250 93927407 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 3; exon_id "ENSE00003576677.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
78 chr3 HAVANA CDS 93927250 93927407 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 3; exon_id "ENSE00003576677.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
79 chr3 HAVANA exon 93924240 93924264 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 4; exon_id "ENSE00003552504.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
80 chr3 HAVANA CDS 93924240 93924264 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 4; exon_id "ENSE00003552504.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
81 chr3 HAVANA exon 93910619 93910705 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 5; exon_id "ENSE00003499730.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
82 chr3 HAVANA CDS 93910619 93910705 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 5; exon_id "ENSE00003499730.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
83 chr3 HAVANA exon 93906021 93906143 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 6; exon_id "ENSE00003668418.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
84 chr3 HAVANA CDS 93906021 93906143 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 6; exon_id "ENSE00003668418.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
85 chr3 HAVANA exon 93905788 93905915 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 7; exon_id "ENSE00001738892.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
86 chr3 HAVANA CDS 93905788 93905915 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 7; exon_id "ENSE00001738892.1"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
87 chr3 HAVANA UTR 93973750 93973862 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000348974.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-003"; exon_number 1; exon_id "ENSE00001340393.6"; level 1; protein_id "ENSP00000330021.6"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000317764.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
88 chr3 HAVANA transcript 93905824 93973639 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
89 chr3 HAVANA exon 93973563 93973639 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 1; exon_id "ENSE00001912335.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
90 chr3 HAVANA exon 93927250 93927407 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 2; exon_id "ENSE00003465799.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
91 chr3 HAVANA exon 93924240 93924264 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 3; exon_id "ENSE00003461233.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
92 chr3 HAVANA exon 93910619 93910705 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 4; exon_id "ENSE00003526781.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
93 chr3 HAVANA exon 93906021 93906143 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 5; exon_id "ENSE00003582467.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
94 chr3 HAVANA CDS 93906021 93906096 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 5; exon_id "ENSE00003582467.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
95 chr3 HAVANA start_codon 93906094 93906096 . - 0 gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 5; exon_id "ENSE00003582467.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
96 chr3 HAVANA exon 93905824 93905915 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 6; exon_id "ENSE00001942325.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
97 chr3 HAVANA CDS 93905824 93905915 . - 2 gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 6; exon_id "ENSE00001942325.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
98 chr3 HAVANA UTR 93973563 93973639 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 1; exon_id "ENSE00001912335.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
99 chr3 HAVANA UTR 93927250 93927407 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 2; exon_id "ENSE00003465799.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
100 chr3 HAVANA UTR 93924240 93924264 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 3; exon_id "ENSE00003461233.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
101 chr3 HAVANA UTR 93910619 93910705 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 4; exon_id "ENSE00003526781.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
102 chr3 HAVANA UTR 93906097 93906143 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000472684.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "PROS1-004"; exon_number 5; exon_id "ENSE00003582467.1"; level 2; protein_id "ENSP00000419616.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352896.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
103 chr3 HAVANA transcript 93906040 93911157 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000488658.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PROS1-005"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352897.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
104 chr3 HAVANA exon 93910619 93911157 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000488658.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PROS1-005"; exon_number 1; exon_id "ENSE00001952088.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352897.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
105 chr3 HAVANA exon 93906040 93906143 . - . gene_id "ENSG00000184500.14"; transcript_id "ENST00000488658.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "PROS1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "PROS1-005"; exon_number 2; exon_id "ENSE00001949787.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000150354.4"; havana_transcript "OTTHUMT00000352897.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
106 chr12 HAVANA transcript 11649854 11895402 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
107 chr12 HAVANA exon 11649854 11650160 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 1; exon_id "ENSE00001324260.2"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
108 chr12 HAVANA CDS 11650128 11650160 . + 0 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 1; exon_id "ENSE00001324260.2"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
109 chr12 HAVANA start_codon 11650128 11650130 . + 0 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 1; exon_id "ENSE00001324260.2"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
110 chr12 HAVANA exon 11752450 11752579 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 2; exon_id "ENSE00003678183.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
111 chr12 HAVANA CDS 11752450 11752579 . + 0 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 2; exon_id "ENSE00003678183.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
112 chr12 HAVANA exon 11839140 11839304 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 3; exon_id "ENSE00001634229.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
113 chr12 HAVANA CDS 11839140 11839304 . + 2 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 3; exon_id "ENSE00001634229.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
114 chr12 HAVANA exon 11853427 11853561 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 4; exon_id "ENSE00001623881.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
115 chr12 HAVANA CDS 11853427 11853561 . + 2 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 4; exon_id "ENSE00001623881.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
116 chr12 HAVANA exon 11869424 11869969 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 5; exon_id "ENSE00001788162.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
117 chr12 HAVANA CDS 11869424 11869969 . + 2 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 5; exon_id "ENSE00001788162.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
118 chr12 HAVANA exon 11884445 11884587 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 6; exon_id "ENSE00001649298.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
119 chr12 HAVANA CDS 11884445 11884587 . + 2 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 6; exon_id "ENSE00001649298.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
120 chr12 HAVANA exon 11885926 11886026 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 7; exon_id "ENSE00001657880.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
121 chr12 HAVANA CDS 11885926 11886026 . + 0 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 7; exon_id "ENSE00001657880.1"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
122 chr12 HAVANA exon 11890941 11895402 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 8; exon_id "ENSE00002242232.2"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
123 chr12 HAVANA CDS 11890941 11891043 . + 1 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 8; exon_id "ENSE00002242232.2"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
124 chr12 HAVANA stop_codon 11891044 11891046 . + 0 gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 8; exon_id "ENSE00002242232.2"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
125 chr12 HAVANA UTR 11649854 11650127 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 1; exon_id "ENSE00001324260.2"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
126 chr12 HAVANA UTR 11891044 11895402 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000396373.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-001"; exon_number 8; exon_id "ENSE00002242232.2"; level 2; protein_id "ENSP00000379658.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8643.1"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
127 chr12 HAVANA transcript 11649944 11826556 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000541426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-003"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400131.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
128 chr12 HAVANA exon 11649944 11650160 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000541426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-003"; exon_number 1; exon_id "ENSE00002246379.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400131.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
129 chr12 HAVANA exon 11752450 11752579 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000541426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-003"; exon_number 2; exon_id "ENSE00003463209.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400131.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
130 chr12 HAVANA exon 11825644 11825713 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000541426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-003"; exon_number 3; exon_id "ENSE00002213302.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400131.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
131 chr12 HAVANA exon 11826402 11826556 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000541426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-003"; exon_number 4; exon_id "ENSE00002292631.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400131.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
132 chr12 HAVANA transcript 11650011 11752875 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000544715.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-002"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400132.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
133 chr12 HAVANA exon 11650011 11650160 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000544715.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-002"; exon_number 1; exon_id "ENSE00002315471.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400132.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
134 chr12 HAVANA exon 11716587 11716743 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000544715.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-002"; exon_number 2; exon_id "ENSE00002283648.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400132.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
135 chr12 HAVANA exon 11752450 11752875 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000544715.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV6-002"; exon_number 3; exon_id "ENSE00002279419.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400132.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
136 chr12 HAVANA transcript 11752501 11840868 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
137 chr12 HAVANA exon 11752501 11752579 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; exon_number 1; exon_id "ENSE00002249789.1"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
138 chr12 HAVANA CDS 11752501 11752579 . + 0 gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; exon_number 1; exon_id "ENSE00002249789.1"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
139 chr12 HAVANA exon 11839140 11839304 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; exon_number 2; exon_id "ENSE00001634229.1"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
140 chr12 HAVANA CDS 11839140 11839304 . + 2 gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; exon_number 2; exon_id "ENSE00001634229.1"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
141 chr12 HAVANA exon 11840461 11840868 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; exon_number 3; exon_id "ENSE00002320726.1"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
142 chr12 HAVANA CDS 11840461 11840480 . + 2 gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; exon_number 3; exon_id "ENSE00002320726.1"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
143 chr12 HAVANA stop_codon 11840481 11840483 . + 0 gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; exon_number 3; exon_id "ENSE00002320726.1"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
144 chr12 HAVANA UTR 11840481 11840868 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000545027.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-004"; exon_number 3; exon_id "ENSE00002320726.1"; level 1; protein_id "ENSP00000441463.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400133.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
145 chr12 HAVANA transcript 11885937 11891610 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000266427.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-005"; level 2; protein_id "ENSP00000266427.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400134.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
146 chr12 HAVANA exon 11885937 11886026 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000266427.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-005"; exon_number 1; exon_id "ENSE00002245284.1"; level 2; protein_id "ENSP00000266427.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400134.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
147 chr12 HAVANA CDS 11885937 11886026 . + 1 gene_id "ENSG00000139083.10"; transcript_id "ENST00000266427.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-005"; exon_number 1; exon_id "ENSE00002245284.1"; level 2; protein_id "ENSP00000266427.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400134.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
148 chr12 HAVANA exon 11891541 11891610 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000266427.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-005"; exon_number 2; exon_id "ENSE00002271514.1"; level 2; protein_id "ENSP00000266427.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400134.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
149 chr12 HAVANA CDS 11891541 11891598 . + 1 gene_id "ENSG00000139083.10"; transcript_id "ENST00000266427.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-005"; exon_number 2; exon_id "ENSE00002271514.1"; level 2; protein_id "ENSP00000266427.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400134.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
150 chr12 HAVANA stop_codon 11891599 11891601 . + 0 gene_id "ENSG00000139083.10"; transcript_id "ENST00000266427.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-005"; exon_number 2; exon_id "ENSE00002271514.1"; level 2; protein_id "ENSP00000266427.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400134.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
151 chr12 HAVANA UTR 11891599 11891610 . + . gene_id "ENSG00000139083.10"; transcript_id "ENST00000266427.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV6-005"; exon_number 2; exon_id "ENSE00002271514.1"; level 2; protein_id "ENSP00000266427.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000168538.2"; havana_transcript "OTTHUMT00000400134.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
152 chr7 HAVANA transcript 140719327 140783157 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
153 chr7 HAVANA exon 140783021 140783157 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 1; exon_id "ENSE00003685923.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
154 chr7 HAVANA CDS 140783021 140783157 . - 2 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 1; exon_id "ENSE00003685923.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
155 chr7 HAVANA exon 140781576 140781693 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 2; exon_id "ENSE00003559218.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
156 chr7 HAVANA CDS 140781576 140781693 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 2; exon_id "ENSE00003559218.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
157 chr7 HAVANA exon 140777991 140778075 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 3; exon_id "ENSE00003521664.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
158 chr7 HAVANA CDS 140777991 140778075 . - 2 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 3; exon_id "ENSE00003521664.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
159 chr7 HAVANA exon 140776912 140777088 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 4; exon_id "ENSE00003527888.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
160 chr7 HAVANA CDS 140776912 140777088 . - 1 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 4; exon_id "ENSE00003527888.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
161 chr7 HAVANA exon 140754187 140754233 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 5; exon_id "ENSE00003649805.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
162 chr7 HAVANA CDS 140754187 140754233 . - 1 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 5; exon_id "ENSE00003649805.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
163 chr7 HAVANA exon 140753275 140753393 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 6; exon_id "ENSE00003485507.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
164 chr7 HAVANA CDS 140753275 140753393 . - 2 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 6; exon_id "ENSE00003485507.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
165 chr7 HAVANA exon 140749287 140749418 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 7; exon_id "ENSE00003587655.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
166 chr7 HAVANA CDS 140749287 140749418 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 7; exon_id "ENSE00003587655.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
167 chr7 HAVANA exon 140739812 140739946 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 8; exon_id "ENSE00003551608.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
168 chr7 HAVANA CDS 140739812 140739946 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 8; exon_id "ENSE00003551608.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
169 chr7 HAVANA exon 140734617 140734770 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 9; exon_id "ENSE00001907699.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
170 chr7 HAVANA CDS 140734617 140734770 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 9; exon_id "ENSE00001907699.1"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
171 chr7 HAVANA exon 140719327 140726516 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 10; exon_id "ENSE00001847804.2"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
172 chr7 HAVANA CDS 140726497 140726516 . - 2 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 10; exon_id "ENSE00001847804.2"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
173 chr7 HAVANA stop_codon 140726494 140726496 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 10; exon_id "ENSE00001847804.2"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
174 chr7 HAVANA UTR 140719327 140726496 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000496384.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-003"; exon_number 10; exon_id "ENSE00001847804.2"; level 2; protein_id "ENSP00000419060.1"; tag "not_organism_supported"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348888.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
175 chr7 HAVANA transcript 140734479 140924764 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
176 chr7 HAVANA exon 140924566 140924764 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 1; exon_id "ENSE00001154485.3"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
177 chr7 HAVANA CDS 140924566 140924703 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 1; exon_id "ENSE00001154485.3"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
178 chr7 HAVANA start_codon 140924701 140924703 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 1; exon_id "ENSE00001154485.3"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
179 chr7 HAVANA exon 140850111 140850212 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 2; exon_id "ENSE00003603715.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
180 chr7 HAVANA CDS 140850111 140850212 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 2; exon_id "ENSE00003603715.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
181 chr7 HAVANA exon 140834609 140834872 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 3; exon_id "ENSE00001035295.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
182 chr7 HAVANA CDS 140834609 140834872 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 3; exon_id "ENSE00001035295.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
183 chr7 HAVANA exon 140808892 140808995 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 4; exon_id "ENSE00001034889.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
184 chr7 HAVANA CDS 140808892 140808995 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 4; exon_id "ENSE00001034889.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
185 chr7 HAVANA exon 140807960 140808062 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 5; exon_id "ENSE00003603742.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
186 chr7 HAVANA CDS 140807960 140808062 . - 1 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 5; exon_id "ENSE00003603742.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
187 chr7 HAVANA exon 140801412 140801560 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 6; exon_id "ENSE00003687908.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
188 chr7 HAVANA CDS 140801412 140801560 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 6; exon_id "ENSE00003687908.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
189 chr7 HAVANA exon 140800362 140800481 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 7; exon_id "ENSE00003487759.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
190 chr7 HAVANA CDS 140800362 140800481 . - 1 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 7; exon_id "ENSE00003487759.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
191 chr7 HAVANA exon 140794308 140794467 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 8; exon_id "ENSE00003569635.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
192 chr7 HAVANA CDS 140794308 140794467 . - 1 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 8; exon_id "ENSE00003569635.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
193 chr7 HAVANA exon 140787548 140787584 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 9; exon_id "ENSE00003680515.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
194 chr7 HAVANA CDS 140787548 140787584 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 9; exon_id "ENSE00003680515.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
195 chr7 HAVANA exon 140783021 140783157 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 10; exon_id "ENSE00003685923.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
196 chr7 HAVANA CDS 140783021 140783157 . - 2 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 10; exon_id "ENSE00003685923.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
197 chr7 HAVANA exon 140781576 140781693 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 11; exon_id "ENSE00003559218.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
198 chr7 HAVANA CDS 140781576 140781693 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 11; exon_id "ENSE00003559218.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
199 chr7 HAVANA exon 140777991 140778075 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 12; exon_id "ENSE00003521664.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
200 chr7 HAVANA CDS 140777991 140778075 . - 2 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 12; exon_id "ENSE00003521664.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
201 chr7 HAVANA exon 140776912 140777088 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 13; exon_id "ENSE00003527888.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
202 chr7 HAVANA CDS 140776912 140777088 . - 1 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 13; exon_id "ENSE00003527888.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
203 chr7 HAVANA exon 140754187 140754233 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 14; exon_id "ENSE00003649805.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
204 chr7 HAVANA CDS 140754187 140754233 . - 1 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 14; exon_id "ENSE00003649805.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
205 chr7 HAVANA exon 140753275 140753393 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 15; exon_id "ENSE00003485507.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
206 chr7 HAVANA CDS 140753275 140753393 . - 2 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 15; exon_id "ENSE00003485507.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
207 chr7 HAVANA exon 140749287 140749418 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 16; exon_id "ENSE00003587655.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
208 chr7 HAVANA CDS 140749287 140749418 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 16; exon_id "ENSE00003587655.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
209 chr7 HAVANA exon 140739812 140739946 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 17; exon_id "ENSE00003551608.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
210 chr7 HAVANA CDS 140739812 140739946 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 17; exon_id "ENSE00003551608.1"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
211 chr7 HAVANA exon 140734479 140734770 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 18; exon_id "ENSE00001034876.10"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
212 chr7 HAVANA CDS 140734600 140734770 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 18; exon_id "ENSE00001034876.10"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
213 chr7 HAVANA stop_codon 140734597 140734599 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 18; exon_id "ENSE00001034876.10"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
214 chr7 HAVANA UTR 140924704 140924764 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 1; exon_id "ENSE00001154485.3"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
215 chr7 HAVANA UTR 140734479 140734599 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000288602.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRAF-001"; exon_number 18; exon_id "ENSE00001034876.10"; level 2; protein_id "ENSP00000288602.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5863.1"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348886.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
216 chr7 HAVANA transcript 140734521 140754211 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
217 chr7 HAVANA exon 140754187 140754211 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 1; exon_id "ENSE00001922833.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
218 chr7 HAVANA CDS 140754187 140754211 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 1; exon_id "ENSE00001922833.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
219 chr7 HAVANA exon 140753275 140753393 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 2; exon_id "ENSE00003485507.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
220 chr7 HAVANA CDS 140753275 140753393 . - 2 gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 2; exon_id "ENSE00003485507.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
221 chr7 HAVANA exon 140749287 140749418 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 3; exon_id "ENSE00003587655.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
222 chr7 HAVANA CDS 140749287 140749418 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 3; exon_id "ENSE00003587655.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
223 chr7 HAVANA exon 140747366 140747447 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 4; exon_id "ENSE00001856068.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
224 chr7 HAVANA CDS 140747418 140747447 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 4; exon_id "ENSE00001856068.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
225 chr7 HAVANA stop_codon 140747415 140747417 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 4; exon_id "ENSE00001856068.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
226 chr7 HAVANA exon 140739812 140739946 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 5; exon_id "ENSE00003664390.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
227 chr7 HAVANA exon 140734521 140734770 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 6; exon_id "ENSE00001952793.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
228 chr7 HAVANA UTR 140747366 140747417 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 4; exon_id "ENSE00001856068.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
229 chr7 HAVANA UTR 140739812 140739946 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 5; exon_id "ENSE00003664390.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
230 chr7 HAVANA UTR 140734521 140734770 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000479537.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-005"; exon_number 6; exon_id "ENSE00001952793.1"; level 2; protein_id "ENSP00000418033.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348890.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
231 chr7 HAVANA transcript 140734597 140924658 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
232 chr7 HAVANA exon 140924566 140924658 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 1; exon_id "ENSE00001862791.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
233 chr7 HAVANA CDS 140924566 140924658 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 1; exon_id "ENSE00001862791.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
234 chr7 HAVANA exon 140850111 140850212 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 2; exon_id "ENSE00003603715.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
235 chr7 HAVANA CDS 140850111 140850212 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 2; exon_id "ENSE00003603715.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
236 chr7 HAVANA exon 140834609 140834872 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 3; exon_id "ENSE00001035295.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
237 chr7 HAVANA CDS 140834609 140834872 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 3; exon_id "ENSE00001035295.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
238 chr7 HAVANA exon 140808892 140808995 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 4; exon_id "ENSE00001034889.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
239 chr7 HAVANA CDS 140808892 140808995 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 4; exon_id "ENSE00001034889.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
240 chr7 HAVANA exon 140808237 140808316 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 5; exon_id "ENSE00001953186.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
241 chr7 HAVANA CDS 140808298 140808316 . - 1 gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 5; exon_id "ENSE00001953186.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
242 chr7 HAVANA stop_codon 140808295 140808297 . - 0 gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 5; exon_id "ENSE00001953186.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
243 chr7 HAVANA exon 140807960 140808062 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 6; exon_id "ENSE00003624175.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
244 chr7 HAVANA exon 140801412 140801560 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 7; exon_id "ENSE00003633946.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
245 chr7 HAVANA exon 140800362 140800481 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 8; exon_id "ENSE00003558819.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
246 chr7 HAVANA exon 140794308 140794467 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 9; exon_id "ENSE00003585081.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
247 chr7 HAVANA exon 140787548 140787584 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 10; exon_id "ENSE00003669794.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
248 chr7 HAVANA exon 140783021 140783157 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 11; exon_id "ENSE00003569958.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
249 chr7 HAVANA exon 140781576 140781693 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 12; exon_id "ENSE00003512445.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
250 chr7 HAVANA exon 140777991 140778075 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 13; exon_id "ENSE00003545181.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
251 chr7 HAVANA exon 140776912 140777088 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 14; exon_id "ENSE00003651618.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
252 chr7 HAVANA exon 140754187 140754233 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 15; exon_id "ENSE00003667578.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
253 chr7 HAVANA exon 140753275 140753393 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 16; exon_id "ENSE00003570443.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
254 chr7 HAVANA exon 140749287 140749418 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 17; exon_id "ENSE00003667236.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
255 chr7 HAVANA exon 140739812 140739946 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 18; exon_id "ENSE00003664390.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
256 chr7 HAVANA exon 140734597 140734770 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 19; exon_id "ENSE00001954074.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
257 chr7 HAVANA UTR 140808237 140808297 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 5; exon_id "ENSE00001953186.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
258 chr7 HAVANA UTR 140807960 140808062 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 6; exon_id "ENSE00003624175.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
259 chr7 HAVANA UTR 140801412 140801560 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 7; exon_id "ENSE00003633946.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
260 chr7 HAVANA UTR 140800362 140800481 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 8; exon_id "ENSE00003558819.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
261 chr7 HAVANA UTR 140794308 140794467 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 9; exon_id "ENSE00003585081.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
262 chr7 HAVANA UTR 140787548 140787584 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 10; exon_id "ENSE00003669794.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
263 chr7 HAVANA UTR 140783021 140783157 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 11; exon_id "ENSE00003569958.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
264 chr7 HAVANA UTR 140781576 140781693 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 12; exon_id "ENSE00003512445.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
265 chr7 HAVANA UTR 140777991 140778075 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 13; exon_id "ENSE00003545181.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
266 chr7 HAVANA UTR 140776912 140777088 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 14; exon_id "ENSE00003651618.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
267 chr7 HAVANA UTR 140754187 140754233 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 15; exon_id "ENSE00003667578.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
268 chr7 HAVANA UTR 140753275 140753393 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 16; exon_id "ENSE00003570443.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
269 chr7 HAVANA UTR 140749287 140749418 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 17; exon_id "ENSE00003667236.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
270 chr7 HAVANA UTR 140739812 140739946 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 18; exon_id "ENSE00003664390.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
271 chr7 HAVANA UTR 140734597 140734770 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000497784.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRAF-002"; exon_number 19; exon_id "ENSE00001954074.1"; level 2; protein_id "ENSP00000420119.1"; tag "mRNA_start_NF"; tag "not_organism_supported"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348887.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
272 chr7 HAVANA transcript 140834061 140924709 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000469930.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRAF-004"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348889.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
273 chr7 HAVANA exon 140924566 140924709 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000469930.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRAF-004"; exon_number 1; exon_id "ENSE00001888191.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348889.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
274 chr7 HAVANA exon 140850111 140850212 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000469930.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRAF-004"; exon_number 2; exon_id "ENSE00003470674.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348889.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
275 chr7 HAVANA exon 140834061 140834872 . - . gene_id "ENSG00000157764.12"; transcript_id "ENST00000469930.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRAF"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRAF-004"; exon_number 3; exon_id "ENSE00001939332.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000157457.2"; havana_transcript "OTTHUMT00000348889.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
276 chr14 HAVANA transcript 77672404 77708020 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
277 chr14 HAVANA exon 77707822 77708020 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 1; exon_id "ENSE00002526080.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
278 chr14 HAVANA CDS 77707822 77708004 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 1; exon_id "ENSE00002526080.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
279 chr14 HAVANA start_codon 77708002 77708004 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 1; exon_id "ENSE00002526080.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
280 chr14 HAVANA exon 77704369 77704477 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 2; exon_id "ENSE00000808492.3"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
281 chr14 HAVANA CDS 77704369 77704477 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 2; exon_id "ENSE00000808492.3"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
282 chr14 HAVANA exon 77694738 77694900 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 3; exon_id "ENSE00003562374.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
283 chr14 HAVANA CDS 77694738 77694900 . - 2 gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 3; exon_id "ENSE00003562374.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
284 chr14 HAVANA exon 77679880 77679970 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 4; exon_id "ENSE00003641188.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
285 chr14 HAVANA CDS 77679880 77679970 . - 1 gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 4; exon_id "ENSE00003641188.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
286 chr14 HAVANA exon 77675656 77675849 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 5; exon_id "ENSE00003501690.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
287 chr14 HAVANA CDS 77675656 77675849 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 5; exon_id "ENSE00003501690.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
288 chr14 HAVANA exon 77672404 77674241 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 6; exon_id "ENSE00001158423.5"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
289 chr14 HAVANA CDS 77673815 77674241 . - 1 gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 6; exon_id "ENSE00001158423.5"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
290 chr14 HAVANA stop_codon 77673812 77673814 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 6; exon_id "ENSE00001158423.5"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
291 chr14 HAVANA UTR 77708005 77708020 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 1; exon_id "ENSE00002526080.1"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
292 chr14 HAVANA UTR 77672404 77673814 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000216489.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH1-001"; exon_number 6; exon_id "ENSE00001158423.5"; level 2; protein_id "ENSP00000216489.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS32127.1"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
293 chr14 HAVANA transcript 77673075 77708010 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
294 chr14 HAVANA exon 77707822 77708010 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 1; exon_id "ENSE00002456131.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
295 chr14 HAVANA CDS 77707822 77708004 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 1; exon_id "ENSE00002456131.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
296 chr14 HAVANA start_codon 77708002 77708004 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 1; exon_id "ENSE00002456131.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
297 chr14 HAVANA exon 77704369 77704477 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 2; exon_id "ENSE00000808492.3"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
298 chr14 HAVANA CDS 77704369 77704477 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 2; exon_id "ENSE00000808492.3"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
299 chr14 HAVANA exon 77679880 77679970 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 3; exon_id "ENSE00003687643.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
300 chr14 HAVANA CDS 77679915 77679970 . - 2 gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 3; exon_id "ENSE00003687643.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
301 chr14 HAVANA stop_codon 77679912 77679914 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 3; exon_id "ENSE00003687643.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
302 chr14 HAVANA exon 77675656 77675849 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 4; exon_id "ENSE00003628371.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
303 chr14 HAVANA exon 77673075 77674241 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 5; exon_id "ENSE00002468294.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
304 chr14 HAVANA UTR 77708005 77708010 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 1; exon_id "ENSE00002456131.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
305 chr14 HAVANA UTR 77679880 77679914 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 3; exon_id "ENSE00003687643.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
306 chr14 HAVANA UTR 77675656 77675849 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 4; exon_id "ENSE00003628371.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
307 chr14 HAVANA UTR 77673075 77674241 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000557057.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-002"; exon_number 5; exon_id "ENSE00002468294.1"; level 2; protein_id "ENSP00000451886.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
308 chr14 HAVANA transcript 77674103 77707992 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
309 chr14 HAVANA exon 77707822 77707992 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 1; exon_id "ENSE00002508492.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
310 chr14 HAVANA CDS 77707822 77707992 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 1; exon_id "ENSE00002508492.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
311 chr14 HAVANA exon 77704369 77704477 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 2; exon_id "ENSE00000808492.3"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
312 chr14 HAVANA CDS 77704369 77704477 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 2; exon_id "ENSE00000808492.3"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
313 chr14 HAVANA exon 77679880 77679970 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 3; exon_id "ENSE00003687643.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
314 chr14 HAVANA CDS 77679915 77679970 . - 2 gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 3; exon_id "ENSE00003687643.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
315 chr14 HAVANA stop_codon 77679912 77679914 . - 0 gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 3; exon_id "ENSE00003687643.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
316 chr14 HAVANA exon 77675656 77675794 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 4; exon_id "ENSE00002526070.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
317 chr14 HAVANA exon 77674103 77674241 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 5; exon_id "ENSE00002475809.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
318 chr14 HAVANA UTR 77679880 77679914 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 3; exon_id "ENSE00003687643.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
319 chr14 HAVANA UTR 77675656 77675794 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 4; exon_id "ENSE00002526070.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
320 chr14 HAVANA UTR 77674103 77674241 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000555100.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH1-003"; exon_number 5; exon_id "ENSE00002475809.1"; level 2; protein_id "ENSP00000451386.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414039.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
321 chr14 HAVANA transcript 77691733 77704452 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000554097.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH1-004"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414040.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
322 chr14 HAVANA exon 77704369 77704452 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000554097.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH1-004"; exon_number 1; exon_id "ENSE00002433065.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414040.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
323 chr14 HAVANA exon 77694738 77694900 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000554097.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH1-004"; exon_number 2; exon_id "ENSE00003668577.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414040.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
324 chr14 HAVANA exon 77691733 77691982 . - . gene_id "ENSG00000100601.9"; transcript_id "ENST00000554097.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH1-004"; exon_number 3; exon_id "ENSE00002455969.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000171542.1"; havana_transcript "OTTHUMT00000414040.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
325 chr19 HAVANA transcript 6372433 6375251 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
326 chr19 HAVANA exon 6372433 6373024 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 1; exon_id "ENSE00000894747.2"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
327 chr19 HAVANA CDS 6372821 6373024 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 1; exon_id "ENSE00000894747.2"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
328 chr19 HAVANA start_codon 6372821 6372823 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 1; exon_id "ENSE00000894747.2"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
329 chr19 HAVANA exon 6374203 6374376 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 2; exon_id "ENSE00003659561.1"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
330 chr19 HAVANA CDS 6374203 6374376 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 2; exon_id "ENSE00003659561.1"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
331 chr19 HAVANA exon 6374465 6374589 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 3; exon_id "ENSE00003566631.1"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
332 chr19 HAVANA CDS 6374465 6374589 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 3; exon_id "ENSE00003566631.1"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
333 chr19 HAVANA exon 6374811 6375251 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 4; exon_id "ENSE00002983775.2"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
334 chr19 HAVANA CDS 6374811 6374970 . + 1 gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 4; exon_id "ENSE00002983775.2"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
335 chr19 HAVANA stop_codon 6374971 6374973 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 4; exon_id "ENSE00002983775.2"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
336 chr19 HAVANA UTR 6372433 6372820 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 1; exon_id "ENSE00000894747.2"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
337 chr19 HAVANA UTR 6374971 6375251 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000245812.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-001"; exon_number 4; exon_id "ENSE00002983775.2"; level 2; protein_id "ENSP00000245812.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12163.1"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453036.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
338 chr19 HAVANA transcript 6373471 6375027 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
339 chr19 HAVANA exon 6373471 6373557 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 1; exon_id "ENSE00003180509.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
340 chr19 HAVANA exon 6374203 6374376 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 2; exon_id "ENSE00003552283.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
341 chr19 HAVANA exon 6374465 6374589 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 3; exon_id "ENSE00003601402.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
342 chr19 HAVANA CDS 6374513 6374589 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 3; exon_id "ENSE00003601402.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
343 chr19 HAVANA start_codon 6374513 6374515 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 3; exon_id "ENSE00003601402.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
344 chr19 HAVANA exon 6374811 6375027 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 4; exon_id "ENSE00003070810.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
345 chr19 HAVANA CDS 6374811 6374970 . + 1 gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 4; exon_id "ENSE00003070810.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
346 chr19 HAVANA stop_codon 6374971 6374973 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 4; exon_id "ENSE00003070810.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
347 chr19 HAVANA UTR 6373471 6373557 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 1; exon_id "ENSE00003180509.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
348 chr19 HAVANA UTR 6374203 6374376 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 2; exon_id "ENSE00003552283.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
349 chr19 HAVANA UTR 6374465 6374512 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 3; exon_id "ENSE00003601402.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
350 chr19 HAVANA UTR 6374971 6375027 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000596657.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-002"; exon_number 4; exon_id "ENSE00003070810.1"; level 2; protein_id "ENSP00000470542.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453037.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
351 chr19 HAVANA transcript 6373704 6375031 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
352 chr19 HAVANA exon 6373704 6373739 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 1; exon_id "ENSE00003039152.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
353 chr19 HAVANA CDS 6373719 6373739 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 1; exon_id "ENSE00003039152.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
354 chr19 HAVANA start_codon 6373719 6373721 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 1; exon_id "ENSE00003039152.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
355 chr19 HAVANA exon 6374203 6374376 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 2; exon_id "ENSE00003659561.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
356 chr19 HAVANA CDS 6374203 6374376 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 2; exon_id "ENSE00003659561.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
357 chr19 HAVANA exon 6374465 6374589 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 3; exon_id "ENSE00003566631.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
358 chr19 HAVANA CDS 6374465 6374589 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 3; exon_id "ENSE00003566631.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
359 chr19 HAVANA exon 6374811 6375031 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 4; exon_id "ENSE00003063943.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
360 chr19 HAVANA CDS 6374811 6374970 . + 1 gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 4; exon_id "ENSE00003063943.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
361 chr19 HAVANA stop_codon 6374971 6374973 . + 0 gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 4; exon_id "ENSE00003063943.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
362 chr19 HAVANA UTR 6373704 6373718 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 1; exon_id "ENSE00003039152.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
363 chr19 HAVANA UTR 6374971 6375031 . + . gene_id "ENSG00000125652.7"; transcript_id "ENST00000599849.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH7"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH7-003"; exon_number 4; exon_id "ENSE00003063943.1"; level 2; protein_id "ENSP00000470562.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000180792.2"; havana_transcript "OTTHUMT00000453038.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
364 chr11 HAVANA transcript 128686535 128812416 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
365 chr11 HAVANA exon 128686535 128686701 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 1; exon_id "ENSE00002174981.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
366 chr11 HAVANA exon 128758115 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 2; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
367 chr11 HAVANA CDS 128758196 128758326 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 2; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
368 chr11 HAVANA start_codon 128758196 128758198 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 2; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
369 chr11 HAVANA exon 128781958 128782023 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 3; exon_id "ENSE00003708415.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
370 chr11 HAVANA CDS 128781958 128781973 . + 1 gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 3; exon_id "ENSE00003708415.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
371 chr11 HAVANA stop_codon 128781974 128781976 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 3; exon_id "ENSE00003708415.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
372 chr11 HAVANA exon 128805366 128805431 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 4; exon_id "ENSE00003708459.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
373 chr11 HAVANA exon 128807180 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 5; exon_id "ENSE00003703526.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
374 chr11 HAVANA exon 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 6; exon_id "ENSE00003708474.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
375 chr11 HAVANA exon 128810459 128812416 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 7; exon_id "ENSE00003666937.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
376 chr11 HAVANA UTR 128686535 128686701 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 1; exon_id "ENSE00002174981.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
377 chr11 HAVANA UTR 128758115 128758195 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 2; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
378 chr11 HAVANA UTR 128781974 128782023 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 3; exon_id "ENSE00003708415.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
379 chr11 HAVANA UTR 128805366 128805431 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 4; exon_id "ENSE00003708459.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
380 chr11 HAVANA UTR 128807180 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 5; exon_id "ENSE00003703526.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
381 chr11 HAVANA UTR 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 6; exon_id "ENSE00003708474.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
382 chr11 HAVANA UTR 128810459 128812416 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608303.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-004"; exon_number 7; exon_id "ENSE00003666937.1"; level 2; protein_id "ENSP00000477262.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386225.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
383 chr11 HAVANA transcript 128692982 128772813 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
384 chr11 HAVANA exon 128692982 128693143 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 1; exon_id "ENSE00003709617.1"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
385 chr11 HAVANA exon 128758115 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 2; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
386 chr11 HAVANA CDS 128758196 128758326 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 2; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
387 chr11 HAVANA start_codon 128758196 128758198 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 2; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
388 chr11 HAVANA exon 128768118 128768272 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 3; exon_id "ENSE00003711461.1"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
389 chr11 HAVANA CDS 128768118 128768272 . + 1 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 3; exon_id "ENSE00003711461.1"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
390 chr11 HAVANA exon 128772782 128772813 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 4; exon_id "ENSE00002153838.2"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
391 chr11 HAVANA CDS 128772782 128772813 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 4; exon_id "ENSE00002153838.2"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
392 chr11 HAVANA UTR 128692982 128693143 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 1; exon_id "ENSE00003709617.1"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
393 chr11 HAVANA UTR 128758115 128758195 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527767.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-008"; exon_number 2; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000476428.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472212.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
394 chr11 HAVANA transcript 128693770 128813267 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
395 chr11 HAVANA exon 128693770 128694276 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 1; exon_id "ENSE00002188617.2"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
396 chr11 HAVANA CDS 128694259 128694276 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 1; exon_id "ENSE00002188617.2"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
397 chr11 HAVANA start_codon 128694259 128694261 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 1; exon_id "ENSE00002188617.2"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
398 chr11 HAVANA exon 128758115 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 2; exon_id "ENSE00003584383.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
399 chr11 HAVANA CDS 128758115 128758326 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 2; exon_id "ENSE00003584383.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
400 chr11 HAVANA exon 128768118 128768272 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 3; exon_id "ENSE00003711461.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
401 chr11 HAVANA CDS 128768118 128768272 . + 1 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 3; exon_id "ENSE00003711461.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
402 chr11 HAVANA exon 128772782 128772985 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 4; exon_id "ENSE00003705449.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
403 chr11 HAVANA CDS 128772782 128772985 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 4; exon_id "ENSE00003705449.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
404 chr11 HAVANA exon 128781958 128782023 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 5; exon_id "ENSE00003704293.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
405 chr11 HAVANA CDS 128781958 128782023 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 5; exon_id "ENSE00003704293.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
406 chr11 HAVANA exon 128805366 128805431 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 6; exon_id "ENSE00003711049.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
407 chr11 HAVANA CDS 128805366 128805431 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 6; exon_id "ENSE00003711049.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
408 chr11 HAVANA exon 128807180 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 7; exon_id "ENSE00003702967.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
409 chr11 HAVANA CDS 128807180 128807239 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 7; exon_id "ENSE00003702967.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
410 chr11 HAVANA exon 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 8; exon_id "ENSE00003705396.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
411 chr11 HAVANA CDS 128809157 128809204 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 8; exon_id "ENSE00003705396.1"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
412 chr11 HAVANA exon 128810459 128813267 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 9; exon_id "ENSE00002175028.2"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
413 chr11 HAVANA CDS 128810459 128810985 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 9; exon_id "ENSE00002175028.2"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
414 chr11 HAVANA stop_codon 128810986 128810988 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 9; exon_id "ENSE00002175028.2"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
415 chr11 HAVANA UTR 128693770 128694258 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 1; exon_id "ENSE00002188617.2"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
416 chr11 HAVANA UTR 128810986 128813267 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000527786.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-001"; exon_number 9; exon_id "ENSE00002175028.2"; level 2; protein_id "ENSP00000433488.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS44768.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386226.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
417 chr11 HAVANA transcript 128694088 128812417 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
418 chr11 HAVANA exon 128694088 128694276 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 1; exon_id "ENSE00002176348.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
419 chr11 HAVANA CDS 128694259 128694276 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 1; exon_id "ENSE00002176348.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
420 chr11 HAVANA start_codon 128694259 128694261 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 1; exon_id "ENSE00002176348.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
421 chr11 HAVANA exon 128758115 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 2; exon_id "ENSE00003584383.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
422 chr11 HAVANA CDS 128758115 128758326 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 2; exon_id "ENSE00003584383.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
423 chr11 HAVANA exon 128764651 128764821 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 3; exon_id "ENSE00002185916.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
424 chr11 HAVANA CDS 128764651 128764666 . + 1 gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 3; exon_id "ENSE00002185916.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
425 chr11 HAVANA stop_codon 128764667 128764669 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 3; exon_id "ENSE00002185916.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
426 chr11 HAVANA exon 128768118 128768272 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 4; exon_id "ENSE00003710713.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
427 chr11 HAVANA exon 128772782 128772985 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 5; exon_id "ENSE00003704694.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
428 chr11 HAVANA exon 128781958 128782023 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 6; exon_id "ENSE00003703661.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
429 chr11 HAVANA exon 128805366 128805431 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 7; exon_id "ENSE00003708459.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
430 chr11 HAVANA exon 128807180 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 8; exon_id "ENSE00003703526.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
431 chr11 HAVANA exon 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 9; exon_id "ENSE00003708474.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
432 chr11 HAVANA exon 128810459 128812417 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 10; exon_id "ENSE00003682809.2"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
433 chr11 HAVANA UTR 128694088 128694258 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 1; exon_id "ENSE00002176348.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
434 chr11 HAVANA UTR 128764667 128764821 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 3; exon_id "ENSE00002185916.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
435 chr11 HAVANA UTR 128768118 128768272 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 4; exon_id "ENSE00003710713.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
436 chr11 HAVANA UTR 128772782 128772985 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 5; exon_id "ENSE00003704694.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
437 chr11 HAVANA UTR 128781958 128782023 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 6; exon_id "ENSE00003703661.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
438 chr11 HAVANA UTR 128805366 128805431 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 7; exon_id "ENSE00003708459.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
439 chr11 HAVANA UTR 128807180 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 8; exon_id "ENSE00003703526.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
440 chr11 HAVANA UTR 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 9; exon_id "ENSE00003708474.1"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
441 chr11 HAVANA UTR 128810459 128812417 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000429175.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "FLI1-002"; exon_number 10; exon_id "ENSE00003682809.2"; level 2; protein_id "ENSP00000399985.3"; transcript_support_level "1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386227.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
442 chr11 HAVANA transcript 128694092 128813267 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
443 chr11 HAVANA exon 128694092 128694276 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 1; exon_id "ENSE00002156307.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
444 chr11 HAVANA exon 128748237 128748290 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 2; exon_id "ENSE00002159395.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
445 chr11 HAVANA exon 128758115 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 3; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
446 chr11 HAVANA CDS 128758196 128758326 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 3; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
447 chr11 HAVANA start_codon 128758196 128758198 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 3; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
448 chr11 HAVANA exon 128768118 128768272 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 4; exon_id "ENSE00003711461.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
449 chr11 HAVANA CDS 128768118 128768272 . + 1 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 4; exon_id "ENSE00003711461.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
450 chr11 HAVANA exon 128772782 128772985 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 5; exon_id "ENSE00003705449.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
451 chr11 HAVANA CDS 128772782 128772985 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 5; exon_id "ENSE00003705449.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
452 chr11 HAVANA exon 128781958 128782023 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 6; exon_id "ENSE00003704293.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
453 chr11 HAVANA CDS 128781958 128782023 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 6; exon_id "ENSE00003704293.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
454 chr11 HAVANA exon 128805366 128805431 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 7; exon_id "ENSE00003711049.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
455 chr11 HAVANA CDS 128805366 128805431 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 7; exon_id "ENSE00003711049.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
456 chr11 HAVANA exon 128807180 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 8; exon_id "ENSE00003702967.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
457 chr11 HAVANA CDS 128807180 128807239 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 8; exon_id "ENSE00003702967.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
458 chr11 HAVANA exon 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 9; exon_id "ENSE00003705396.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
459 chr11 HAVANA CDS 128809157 128809204 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 9; exon_id "ENSE00003705396.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
460 chr11 HAVANA exon 128810459 128813267 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 10; exon_id "ENSE00002175028.2"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
461 chr11 HAVANA CDS 128810459 128810985 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 10; exon_id "ENSE00002175028.2"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
462 chr11 HAVANA stop_codon 128810986 128810988 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 10; exon_id "ENSE00002175028.2"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
463 chr11 HAVANA UTR 128694092 128694276 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 1; exon_id "ENSE00002156307.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
464 chr11 HAVANA UTR 128748237 128748290 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 2; exon_id "ENSE00002159395.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
465 chr11 HAVANA UTR 128758115 128758195 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 3; exon_id "ENSE00003741987.1"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
466 chr11 HAVANA UTR 128810986 128813267 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000534087.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-003"; exon_number 10; exon_id "ENSE00002175028.2"; level 2; protein_id "ENSP00000432950.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS53725.1"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386228.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
467 chr11 HAVANA transcript 128758106 128768516 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608055.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FLI1-007"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472213.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
468 chr11 HAVANA exon 128758106 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608055.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FLI1-007"; exon_number 1; exon_id "ENSE00003703922.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472213.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
469 chr11 HAVANA exon 128768118 128768516 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000608055.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FLI1-007"; exon_number 2; exon_id "ENSE00003710265.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000472213.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
470 chr11 HAVANA transcript 128803876 128812416 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000528790.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FLI1-006"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386229.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
471 chr11 HAVANA exon 128803876 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000528790.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FLI1-006"; exon_number 1; exon_id "ENSE00002194732.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386229.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
472 chr11 HAVANA exon 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000528790.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FLI1-006"; exon_number 2; exon_id "ENSE00003708474.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386229.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
473 chr11 HAVANA exon 128810459 128812416 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000528790.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "FLI1-006"; exon_number 3; exon_id "ENSE00003666937.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000165792.4"; havana_transcript "OTTHUMT00000386229.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
474 chr11 ENSEMBL transcript 128686535 128813266 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
475 chr11 ENSEMBL exon 128686535 128686701 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 1; exon_id "ENSE00002174981.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
476 chr11 ENSEMBL exon 128758115 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 2; exon_id "ENSE00003716263.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
477 chr11 ENSEMBL CDS 128758317 128758326 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 2; exon_id "ENSE00003716263.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
478 chr11 ENSEMBL start_codon 128758317 128758319 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 2; exon_id "ENSE00003716263.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
479 chr11 ENSEMBL exon 128781958 128782023 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 3; exon_id "ENSE00003704293.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
480 chr11 ENSEMBL CDS 128781958 128782023 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 3; exon_id "ENSE00003704293.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
481 chr11 ENSEMBL exon 128805366 128805431 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 4; exon_id "ENSE00003711049.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
482 chr11 ENSEMBL CDS 128805366 128805431 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 4; exon_id "ENSE00003711049.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
483 chr11 ENSEMBL exon 128807180 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 5; exon_id "ENSE00003702967.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
484 chr11 ENSEMBL CDS 128807180 128807239 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 5; exon_id "ENSE00003702967.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
485 chr11 ENSEMBL exon 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 6; exon_id "ENSE00003705396.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
486 chr11 ENSEMBL CDS 128809157 128809204 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 6; exon_id "ENSE00003705396.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
487 chr11 ENSEMBL exon 128810459 128813266 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 7; exon_id "ENSE00001530041.2"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
488 chr11 ENSEMBL CDS 128810459 128810985 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 7; exon_id "ENSE00001530041.2"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
489 chr11 ENSEMBL stop_codon 128810986 128810988 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 7; exon_id "ENSE00001530041.2"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
490 chr11 ENSEMBL UTR 128686535 128686701 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 1; exon_id "ENSE00002174981.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
491 chr11 ENSEMBL UTR 128758115 128758316 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 2; exon_id "ENSE00003716263.1"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
492 chr11 ENSEMBL UTR 128810986 128813266 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000344954.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-202"; exon_number 7; exon_id "ENSE00001530041.2"; level 3; protein_id "ENSP00000339627.7"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS59230.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
493 chr11 ENSEMBL transcript 128693916 128813266 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
494 chr11 ENSEMBL exon 128693916 128694276 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 1; exon_id "ENSE00003725375.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
495 chr11 ENSEMBL exon 128758115 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 2; exon_id "ENSE00003716345.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
496 chr11 ENSEMBL exon 128764651 128764821 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 3; exon_id "ENSE00001369506.4"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
497 chr11 ENSEMBL CDS 128764790 128764821 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 3; exon_id "ENSE00001369506.4"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
498 chr11 ENSEMBL start_codon 128764790 128764792 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 3; exon_id "ENSE00001369506.4"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
499 chr11 ENSEMBL exon 128768118 128768272 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 4; exon_id "ENSE00003711461.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
500 chr11 ENSEMBL CDS 128768118 128768272 . + 1 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 4; exon_id "ENSE00003711461.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
501 chr11 ENSEMBL exon 128772782 128772985 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 5; exon_id "ENSE00003705449.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
502 chr11 ENSEMBL CDS 128772782 128772985 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 5; exon_id "ENSE00003705449.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
503 chr11 ENSEMBL exon 128781958 128782023 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 6; exon_id "ENSE00003704293.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
504 chr11 ENSEMBL CDS 128781958 128782023 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 6; exon_id "ENSE00003704293.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
505 chr11 ENSEMBL exon 128805366 128805431 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 7; exon_id "ENSE00003711049.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
506 chr11 ENSEMBL CDS 128805366 128805431 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 7; exon_id "ENSE00003711049.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
507 chr11 ENSEMBL exon 128807180 128807239 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 8; exon_id "ENSE00003702967.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
508 chr11 ENSEMBL CDS 128807180 128807239 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 8; exon_id "ENSE00003702967.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
509 chr11 ENSEMBL exon 128809157 128809204 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 9; exon_id "ENSE00003705396.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
510 chr11 ENSEMBL CDS 128809157 128809204 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 9; exon_id "ENSE00003705396.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
511 chr11 ENSEMBL exon 128810459 128813266 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 10; exon_id "ENSE00001530041.2"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
512 chr11 ENSEMBL CDS 128810459 128810985 . + 2 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 10; exon_id "ENSE00001530041.2"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
513 chr11 ENSEMBL stop_codon 128810986 128810988 . + 0 gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 10; exon_id "ENSE00001530041.2"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
514 chr11 ENSEMBL UTR 128693916 128694276 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 1; exon_id "ENSE00003725375.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
515 chr11 ENSEMBL UTR 128758115 128758326 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 2; exon_id "ENSE00003716345.1"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
516 chr11 ENSEMBL UTR 128764651 128764789 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 3; exon_id "ENSE00001369506.4"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
517 chr11 ENSEMBL UTR 128810986 128813266 . + . gene_id "ENSG00000151702.16"; transcript_id "ENST00000281428.12"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "FLI1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "FLI1-201"; exon_number 10; exon_id "ENSE00001530041.2"; level 3; protein_id "ENSP00000281428.8"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS59231.1"; havana_gene "OTTHUMG00000165792.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
518 chr2 HAVANA transcript 42169350 42332548 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
519 chr2 HAVANA exon 42169350 42169636 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 1; exon_id "ENSE00001934477.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
520 chr2 HAVANA CDS 42169612 42169636 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 1; exon_id "ENSE00001934477.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
521 chr2 HAVANA start_codon 42169612 42169614 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 1; exon_id "ENSE00001934477.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
522 chr2 HAVANA exon 42245505 42245687 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 2; exon_id "ENSE00003642723.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
523 chr2 HAVANA CDS 42245505 42245687 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 2; exon_id "ENSE00003642723.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
524 chr2 HAVANA exon 42256501 42256630 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 3; exon_id "ENSE00003596619.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
525 chr2 HAVANA CDS 42256501 42256630 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 3; exon_id "ENSE00003596619.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
526 chr2 HAVANA exon 42261121 42261294 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 4; exon_id "ENSE00000962691.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
527 chr2 HAVANA CDS 42261121 42261294 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 4; exon_id "ENSE00000962691.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
528 chr2 HAVANA exon 42263178 42263306 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 5; exon_id "ENSE00001779613.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
529 chr2 HAVANA CDS 42263178 42263306 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 5; exon_id "ENSE00001779613.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
530 chr2 HAVANA exon 42264706 42264731 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 6; exon_id "ENSE00001665541.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
531 chr2 HAVANA CDS 42264706 42264731 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 6; exon_id "ENSE00001665541.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
532 chr2 HAVANA exon 42280850 42280973 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 7; exon_id "ENSE00000962694.2"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
533 chr2 HAVANA CDS 42280850 42280973 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 7; exon_id "ENSE00000962694.2"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
534 chr2 HAVANA exon 42282823 42282972 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 8; exon_id "ENSE00000962695.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
535 chr2 HAVANA CDS 42282823 42282972 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 8; exon_id "ENSE00000962695.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
536 chr2 HAVANA exon 42284634 42284703 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 9; exon_id "ENSE00003621165.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
537 chr2 HAVANA CDS 42284634 42284703 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 9; exon_id "ENSE00003621165.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
538 chr2 HAVANA exon 42286269 42286379 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 10; exon_id "ENSE00003686237.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
539 chr2 HAVANA CDS 42286269 42286379 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 10; exon_id "ENSE00003686237.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
540 chr2 HAVANA exon 42288227 42288322 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 11; exon_id "ENSE00003676844.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
541 chr2 HAVANA CDS 42288227 42288322 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 11; exon_id "ENSE00003676844.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
542 chr2 HAVANA exon 42295125 42295259 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 12; exon_id "ENSE00003665705.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
543 chr2 HAVANA CDS 42295125 42295259 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 12; exon_id "ENSE00003665705.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
544 chr2 HAVANA exon 42295381 42295516 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 13; exon_id "ENSE00003554806.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
545 chr2 HAVANA CDS 42295381 42295516 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 13; exon_id "ENSE00003554806.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
546 chr2 HAVANA exon 42301241 42301392 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 14; exon_id "ENSE00003686987.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
547 chr2 HAVANA CDS 42301241 42301392 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 14; exon_id "ENSE00003686987.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
548 chr2 HAVANA exon 42303104 42303229 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 15; exon_id "ENSE00003465520.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
549 chr2 HAVANA CDS 42303104 42303229 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 15; exon_id "ENSE00003465520.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
550 chr2 HAVANA exon 42303315 42303446 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 16; exon_id "ENSE00003652501.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
551 chr2 HAVANA CDS 42303315 42303446 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 16; exon_id "ENSE00003652501.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
552 chr2 HAVANA exon 42304484 42304551 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 17; exon_id "ENSE00003530355.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
553 chr2 HAVANA CDS 42304484 42304551 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 17; exon_id "ENSE00003530355.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
554 chr2 HAVANA exon 42315962 42316050 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 18; exon_id "ENSE00003656184.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
555 chr2 HAVANA CDS 42315962 42316050 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 18; exon_id "ENSE00003656184.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
556 chr2 HAVANA exon 42317427 42317524 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 19; exon_id "ENSE00003601847.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
557 chr2 HAVANA CDS 42317427 42317524 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 19; exon_id "ENSE00003601847.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
558 chr2 HAVANA exon 42325467 42325554 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 20; exon_id "ENSE00003621553.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
559 chr2 HAVANA CDS 42325467 42325554 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 20; exon_id "ENSE00003621553.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
560 chr2 HAVANA exon 42326154 42326252 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 21; exon_id "ENSE00003615295.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
561 chr2 HAVANA CDS 42326154 42326252 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 21; exon_id "ENSE00003615295.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
562 chr2 HAVANA exon 42328886 42329016 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 22; exon_id "ENSE00003686040.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
563 chr2 HAVANA CDS 42328886 42329016 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 22; exon_id "ENSE00003686040.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
564 chr2 HAVANA exon 42329734 42332548 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 23; exon_id "ENSE00003608258.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
565 chr2 HAVANA CDS 42329734 42330204 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 23; exon_id "ENSE00003608258.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
566 chr2 HAVANA stop_codon 42330205 42330207 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 23; exon_id "ENSE00003608258.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
567 chr2 HAVANA UTR 42169350 42169611 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 1; exon_id "ENSE00001934477.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
568 chr2 HAVANA UTR 42330205 42332548 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000318522.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-001"; exon_number 23; exon_id "ENSE00003608258.1"; level 2; protein_id "ENSP00000320663.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS1807.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000250463.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
569 chr2 HAVANA transcript 42169353 42330744 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
570 chr2 HAVANA exon 42169353 42169636 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 1; exon_id "ENSE00001548738.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
571 chr2 HAVANA CDS 42169612 42169636 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 1; exon_id "ENSE00001548738.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
572 chr2 HAVANA start_codon 42169612 42169614 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 1; exon_id "ENSE00001548738.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
573 chr2 HAVANA exon 42245505 42245687 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 2; exon_id "ENSE00003642723.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
574 chr2 HAVANA CDS 42245505 42245687 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 2; exon_id "ENSE00003642723.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
575 chr2 HAVANA exon 42256501 42256630 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 3; exon_id "ENSE00003596619.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
576 chr2 HAVANA CDS 42256501 42256630 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 3; exon_id "ENSE00003596619.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
577 chr2 HAVANA exon 42263178 42263306 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 4; exon_id "ENSE00001779613.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
578 chr2 HAVANA CDS 42263178 42263306 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 4; exon_id "ENSE00001779613.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
579 chr2 HAVANA exon 42264706 42264731 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 5; exon_id "ENSE00001665541.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
580 chr2 HAVANA CDS 42264706 42264731 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 5; exon_id "ENSE00001665541.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
581 chr2 HAVANA exon 42280850 42280973 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 6; exon_id "ENSE00000962694.2"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
582 chr2 HAVANA CDS 42280850 42280973 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 6; exon_id "ENSE00000962694.2"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
583 chr2 HAVANA exon 42282823 42282972 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 7; exon_id "ENSE00000962695.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
584 chr2 HAVANA CDS 42282823 42282972 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 7; exon_id "ENSE00000962695.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
585 chr2 HAVANA exon 42284634 42284703 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 8; exon_id "ENSE00003621165.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
586 chr2 HAVANA CDS 42284634 42284703 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 8; exon_id "ENSE00003621165.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
587 chr2 HAVANA exon 42286269 42286379 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 9; exon_id "ENSE00003686237.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
588 chr2 HAVANA CDS 42286269 42286379 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 9; exon_id "ENSE00003686237.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
589 chr2 HAVANA exon 42288227 42288322 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 10; exon_id "ENSE00003676844.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
590 chr2 HAVANA CDS 42288227 42288322 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 10; exon_id "ENSE00003676844.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
591 chr2 HAVANA exon 42295125 42295259 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 11; exon_id "ENSE00003665705.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
592 chr2 HAVANA CDS 42295125 42295259 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 11; exon_id "ENSE00003665705.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
593 chr2 HAVANA exon 42295381 42295516 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 12; exon_id "ENSE00003554806.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
594 chr2 HAVANA CDS 42295381 42295516 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 12; exon_id "ENSE00003554806.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
595 chr2 HAVANA exon 42301241 42301392 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 13; exon_id "ENSE00003686987.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
596 chr2 HAVANA CDS 42301241 42301392 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 13; exon_id "ENSE00003686987.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
597 chr2 HAVANA exon 42303104 42303229 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 14; exon_id "ENSE00003465520.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
598 chr2 HAVANA CDS 42303104 42303229 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 14; exon_id "ENSE00003465520.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
599 chr2 HAVANA exon 42303315 42303446 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 15; exon_id "ENSE00003652501.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
600 chr2 HAVANA CDS 42303315 42303446 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 15; exon_id "ENSE00003652501.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
601 chr2 HAVANA exon 42304484 42304551 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 16; exon_id "ENSE00003530355.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
602 chr2 HAVANA CDS 42304484 42304551 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 16; exon_id "ENSE00003530355.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
603 chr2 HAVANA exon 42315962 42316050 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 17; exon_id "ENSE00003656184.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
604 chr2 HAVANA CDS 42315962 42316050 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 17; exon_id "ENSE00003656184.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
605 chr2 HAVANA exon 42317427 42317524 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 18; exon_id "ENSE00003601847.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
606 chr2 HAVANA CDS 42317427 42317524 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 18; exon_id "ENSE00003601847.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
607 chr2 HAVANA exon 42325467 42325554 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 19; exon_id "ENSE00003621553.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
608 chr2 HAVANA CDS 42325467 42325554 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 19; exon_id "ENSE00003621553.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
609 chr2 HAVANA exon 42326154 42326252 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 20; exon_id "ENSE00003615295.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
610 chr2 HAVANA CDS 42326154 42326252 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 20; exon_id "ENSE00003615295.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
611 chr2 HAVANA exon 42328886 42329016 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 21; exon_id "ENSE00003686040.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
612 chr2 HAVANA CDS 42328886 42329016 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 21; exon_id "ENSE00003686040.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
613 chr2 HAVANA exon 42329734 42330744 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 22; exon_id "ENSE00001563236.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
614 chr2 HAVANA CDS 42329734 42330204 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 22; exon_id "ENSE00001563236.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
615 chr2 HAVANA stop_codon 42330205 42330207 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 22; exon_id "ENSE00001563236.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
616 chr2 HAVANA UTR 42169353 42169611 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 1; exon_id "ENSE00001548738.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
617 chr2 HAVANA UTR 42330205 42330744 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000402711.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-002"; exon_number 22; exon_id "ENSE00001563236.1"; level 2; protein_id "ENSP00000385059.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46266.1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325773.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
618 chr2 HAVANA transcript 42169381 42261513 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000409040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-011"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000327069.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
619 chr2 HAVANA exon 42169381 42169636 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000409040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-011"; exon_number 1; exon_id "ENSE00001589271.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000327069.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
620 chr2 HAVANA exon 42245505 42245687 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000409040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-011"; exon_number 2; exon_id "ENSE00003495082.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000327069.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
621 chr2 HAVANA exon 42256501 42256630 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000409040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-011"; exon_number 3; exon_id "ENSE00003680353.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000327069.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
622 chr2 HAVANA exon 42261121 42261513 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000409040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-011"; exon_number 4; exon_id "ENSE00001588115.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000327069.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
623 chr2 HAVANA transcript 42169391 42245688 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000482660.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "EML4-009"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325812.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
624 chr2 HAVANA exon 42169391 42169636 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000482660.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "EML4-009"; exon_number 1; exon_id "ENSE00001341890.4"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325812.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
625 chr2 HAVANA exon 42207929 42208082 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000482660.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "EML4-009"; exon_number 2; exon_id "ENSE00001913318.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325812.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
626 chr2 HAVANA exon 42245505 42245688 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000482660.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "EML4-009"; exon_number 3; exon_id "ENSE00001946641.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325812.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
627 chr2 HAVANA transcript 42169461 42330874 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
628 chr2 HAVANA exon 42169461 42169636 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 1; exon_id "ENSE00001578164.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
629 chr2 HAVANA CDS 42169612 42169636 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 1; exon_id "ENSE00001578164.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
630 chr2 HAVANA start_codon 42169612 42169614 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 1; exon_id "ENSE00001578164.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
631 chr2 HAVANA exon 42245505 42245687 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 2; exon_id "ENSE00003642723.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
632 chr2 HAVANA CDS 42245505 42245687 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 2; exon_id "ENSE00003642723.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
633 chr2 HAVANA exon 42256501 42256630 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 3; exon_id "ENSE00003596619.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
634 chr2 HAVANA CDS 42256501 42256630 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 3; exon_id "ENSE00003596619.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
635 chr2 HAVANA exon 42261121 42261294 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 4; exon_id "ENSE00000962691.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
636 chr2 HAVANA CDS 42261121 42261294 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 4; exon_id "ENSE00000962691.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
637 chr2 HAVANA exon 42263178 42263306 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 5; exon_id "ENSE00001779613.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
638 chr2 HAVANA CDS 42263178 42263306 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 5; exon_id "ENSE00001779613.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
639 chr2 HAVANA exon 42264706 42264731 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 6; exon_id "ENSE00001665541.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
640 chr2 HAVANA CDS 42264706 42264731 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 6; exon_id "ENSE00001665541.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
641 chr2 HAVANA exon 42264919 42264951 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 7; exon_id "ENSE00001564343.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
642 chr2 HAVANA CDS 42264919 42264951 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 7; exon_id "ENSE00001564343.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
643 chr2 HAVANA exon 42280850 42280973 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 8; exon_id "ENSE00000962694.2"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
644 chr2 HAVANA CDS 42280850 42280973 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 8; exon_id "ENSE00000962694.2"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
645 chr2 HAVANA exon 42282823 42282972 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 9; exon_id "ENSE00000962695.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
646 chr2 HAVANA CDS 42282823 42282972 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 9; exon_id "ENSE00000962695.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
647 chr2 HAVANA exon 42284634 42284703 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 10; exon_id "ENSE00003621165.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
648 chr2 HAVANA CDS 42284634 42284703 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 10; exon_id "ENSE00003621165.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
649 chr2 HAVANA exon 42286269 42286379 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 11; exon_id "ENSE00003686237.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
650 chr2 HAVANA CDS 42286269 42286379 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 11; exon_id "ENSE00003686237.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
651 chr2 HAVANA exon 42288227 42288322 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 12; exon_id "ENSE00003676844.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
652 chr2 HAVANA CDS 42288227 42288322 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 12; exon_id "ENSE00003676844.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
653 chr2 HAVANA exon 42295125 42295259 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 13; exon_id "ENSE00003665705.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
654 chr2 HAVANA CDS 42295125 42295259 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 13; exon_id "ENSE00003665705.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
655 chr2 HAVANA exon 42295381 42295516 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 14; exon_id "ENSE00003554806.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
656 chr2 HAVANA CDS 42295381 42295516 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 14; exon_id "ENSE00003554806.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
657 chr2 HAVANA exon 42301241 42301392 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 15; exon_id "ENSE00003686987.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
658 chr2 HAVANA CDS 42301241 42301392 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 15; exon_id "ENSE00003686987.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
659 chr2 HAVANA exon 42303104 42303229 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 16; exon_id "ENSE00003465520.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
660 chr2 HAVANA CDS 42303104 42303229 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 16; exon_id "ENSE00003465520.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
661 chr2 HAVANA exon 42303315 42303446 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 17; exon_id "ENSE00003652501.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
662 chr2 HAVANA CDS 42303315 42303446 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 17; exon_id "ENSE00003652501.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
663 chr2 HAVANA exon 42304484 42304551 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 18; exon_id "ENSE00003530355.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
664 chr2 HAVANA CDS 42304484 42304551 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 18; exon_id "ENSE00003530355.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
665 chr2 HAVANA exon 42315962 42316050 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 19; exon_id "ENSE00003656184.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
666 chr2 HAVANA CDS 42315962 42316050 . + 1 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 19; exon_id "ENSE00003656184.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
667 chr2 HAVANA exon 42317427 42317524 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 20; exon_id "ENSE00003601847.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
668 chr2 HAVANA CDS 42317427 42317524 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 20; exon_id "ENSE00003601847.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
669 chr2 HAVANA exon 42325467 42325554 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 21; exon_id "ENSE00003621553.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
670 chr2 HAVANA CDS 42325467 42325554 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 21; exon_id "ENSE00003621553.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
671 chr2 HAVANA exon 42326154 42326252 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 22; exon_id "ENSE00003615295.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
672 chr2 HAVANA CDS 42326154 42326252 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 22; exon_id "ENSE00003615295.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
673 chr2 HAVANA exon 42328886 42329016 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 23; exon_id "ENSE00003686040.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
674 chr2 HAVANA CDS 42328886 42329016 . + 2 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 23; exon_id "ENSE00003686040.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
675 chr2 HAVANA exon 42329734 42330874 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 24; exon_id "ENSE00001554583.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
676 chr2 HAVANA CDS 42329734 42330204 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 24; exon_id "ENSE00001554583.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
677 chr2 HAVANA stop_codon 42330205 42330207 . + 0 gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 24; exon_id "ENSE00001554583.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
678 chr2 HAVANA UTR 42169461 42169611 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 1; exon_id "ENSE00001578164.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
679 chr2 HAVANA UTR 42330205 42330874 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000401738.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EML4-003"; exon_number 24; exon_id "ENSE00001554583.1"; level 2; protein_id "ENSP00000384939.3"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325806.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
680 chr2 HAVANA transcript 42282909 42289913 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000480320.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-005"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325808.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
681 chr2 HAVANA exon 42282909 42282972 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000480320.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-005"; exon_number 1; exon_id "ENSE00001820295.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325808.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
682 chr2 HAVANA exon 42284634 42284703 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000480320.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-005"; exon_number 2; exon_id "ENSE00003550579.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325808.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
683 chr2 HAVANA exon 42286269 42286379 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000480320.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-005"; exon_number 3; exon_id "ENSE00003588090.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325808.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
684 chr2 HAVANA exon 42288227 42289913 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000480320.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-005"; exon_number 4; exon_id "ENSE00001928412.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325808.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
685 chr2 HAVANA transcript 42285923 42332548 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
686 chr2 HAVANA exon 42285923 42286379 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 1; exon_id "ENSE00001895630.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
687 chr2 HAVANA exon 42288227 42288322 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 2; exon_id "ENSE00003472958.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
688 chr2 HAVANA exon 42295125 42295259 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 3; exon_id "ENSE00003614890.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
689 chr2 HAVANA exon 42295381 42295516 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 4; exon_id "ENSE00003646185.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
690 chr2 HAVANA exon 42301241 42301392 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 5; exon_id "ENSE00003523088.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
691 chr2 HAVANA exon 42303104 42303229 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 6; exon_id "ENSE00003533814.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
692 chr2 HAVANA exon 42303315 42303446 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 7; exon_id "ENSE00003534200.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
693 chr2 HAVANA exon 42304484 42304551 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 8; exon_id "ENSE00003567253.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
694 chr2 HAVANA exon 42315962 42316050 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 9; exon_id "ENSE00003584849.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
695 chr2 HAVANA exon 42317427 42317524 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 10; exon_id "ENSE00003630291.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
696 chr2 HAVANA exon 42325467 42325554 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 11; exon_id "ENSE00003542719.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
697 chr2 HAVANA exon 42326154 42326252 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 12; exon_id "ENSE00003673929.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
698 chr2 HAVANA exon 42328886 42329016 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 13; exon_id "ENSE00003570610.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
699 chr2 HAVANA exon 42329734 42332548 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000406175.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EML4-006"; exon_number 14; exon_id "ENSE00003576140.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325809.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
700 chr2 HAVANA transcript 42317474 42319998 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000472632.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "EML4-010"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325813.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
701 chr2 HAVANA exon 42317474 42317524 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000472632.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "EML4-010"; exon_number 1; exon_id "ENSE00001942293.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325813.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
702 chr2 HAVANA exon 42319535 42319998 . + . gene_id "ENSG00000143924.18"; transcript_id "ENST00000472632.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EML4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "EML4-010"; exon_number 2; exon_id "ENSE00001817183.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000128603.6"; havana_transcript "OTTHUMT00000325813.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
703 chr12 HAVANA transcript 109088189 109093472 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
704 chr12 HAVANA exon 109093247 109093472 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 1; exon_id "ENSE00001422228.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
705 chr12 HAVANA exon 109092507 109092787 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 2; exon_id "ENSE00001391659.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
706 chr12 HAVANA CDS 109092507 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 2; exon_id "ENSE00001391659.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
707 chr12 HAVANA start_codon 109092784 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 2; exon_id "ENSE00001391659.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
708 chr12 HAVANA exon 109090009 109090207 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 3; exon_id "ENSE00001367884.1"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
709 chr12 HAVANA CDS 109090009 109090207 . - 2 gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 3; exon_id "ENSE00001367884.1"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
710 chr12 HAVANA exon 109088189 109088512 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 4; exon_id "ENSE00002242598.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
711 chr12 HAVANA CDS 109088209 109088512 . - 1 gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 4; exon_id "ENSE00002242598.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
712 chr12 HAVANA stop_codon 109088206 109088208 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 4; exon_id "ENSE00002242598.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
713 chr12 HAVANA UTR 109093247 109093472 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 1; exon_id "ENSE00001422228.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
714 chr12 HAVANA UTR 109092787 109092787 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 2; exon_id "ENSE00001391659.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
715 chr12 HAVANA UTR 109088189 109088208 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000343075.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-001"; exon_number 4; exon_id "ENSE00002242598.2"; level 2; protein_id "ENSP00000343021.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403059.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
716 chr12 HAVANA transcript 109088197 109093459 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
717 chr12 HAVANA exon 109093247 109093459 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 1; exon_id "ENSE00002221182.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
718 chr12 HAVANA exon 109092507 109092937 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 2; exon_id "ENSE00001732735.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
719 chr12 HAVANA CDS 109092507 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 2; exon_id "ENSE00001732735.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
720 chr12 HAVANA start_codon 109092784 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 2; exon_id "ENSE00001732735.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
721 chr12 HAVANA exon 109090009 109090207 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 3; exon_id "ENSE00001367884.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
722 chr12 HAVANA CDS 109090009 109090207 . - 2 gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 3; exon_id "ENSE00001367884.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
723 chr12 HAVANA exon 109088197 109088512 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 4; exon_id "ENSE00002298126.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
724 chr12 HAVANA CDS 109088209 109088512 . - 1 gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 4; exon_id "ENSE00002298126.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
725 chr12 HAVANA stop_codon 109088206 109088208 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 4; exon_id "ENSE00002298126.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
726 chr12 HAVANA UTR 109093247 109093459 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 1; exon_id "ENSE00002221182.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
727 chr12 HAVANA UTR 109092787 109092937 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 2; exon_id "ENSE00001732735.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
728 chr12 HAVANA UTR 109088197 109088208 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000429722.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-007"; exon_number 4; exon_id "ENSE00002298126.1"; level 2; protein_id "ENSP00000398181.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS31897.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403063.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
729 chr12 HAVANA transcript 109088222 109092789 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
730 chr12 HAVANA exon 109092507 109092789 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; exon_number 1; exon_id "ENSE00002320485.1"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
731 chr12 HAVANA CDS 109092507 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; exon_number 1; exon_id "ENSE00002320485.1"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
732 chr12 HAVANA start_codon 109092784 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; exon_number 1; exon_id "ENSE00002320485.1"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
733 chr12 HAVANA exon 109088222 109088512 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; exon_number 2; exon_id "ENSE00002283005.1"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
734 chr12 HAVANA CDS 109088322 109088512 . - 2 gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; exon_number 2; exon_id "ENSE00002283005.1"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
735 chr12 HAVANA stop_codon 109088319 109088321 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; exon_number 2; exon_id "ENSE00002283005.1"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
736 chr12 HAVANA UTR 109092787 109092789 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; exon_number 1; exon_id "ENSE00002320485.1"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
737 chr12 HAVANA UTR 109088222 109088321 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000440112.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-003"; exon_number 2; exon_id "ENSE00002283005.1"; level 1; protein_id "ENSP00000399820.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403061.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
738 chr12 HAVANA transcript 109089620 109092752 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000543444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-009"; level 2; protein_id "ENSP00000474702.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403062.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
739 chr12 HAVANA exon 109092507 109092752 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000543444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-009"; exon_number 1; exon_id "ENSE00002216790.1"; level 2; protein_id "ENSP00000474702.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403062.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
740 chr12 HAVANA CDS 109092507 109092752 . - 2 gene_id "ENSG00000189046.10"; transcript_id "ENST00000543444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-009"; exon_number 1; exon_id "ENSE00002216790.1"; level 2; protein_id "ENSP00000474702.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403062.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
741 chr12 HAVANA exon 109089620 109090207 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000543444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-009"; exon_number 2; exon_id "ENSE00002256593.1"; level 2; protein_id "ENSP00000474702.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403062.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
742 chr12 HAVANA CDS 109090008 109090207 . - 2 gene_id "ENSG00000189046.10"; transcript_id "ENST00000543444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-009"; exon_number 2; exon_id "ENSE00002256593.1"; level 2; protein_id "ENSP00000474702.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403062.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
743 chr12 HAVANA stop_codon 109090005 109090007 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000543444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-009"; exon_number 2; exon_id "ENSE00002256593.1"; level 2; protein_id "ENSP00000474702.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403062.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
744 chr12 HAVANA UTR 109089620 109090007 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000543444.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-009"; exon_number 2; exon_id "ENSE00002256593.1"; level 2; protein_id "ENSP00000474702.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403062.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
745 chr12 HAVANA transcript 109090037 109093469 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
746 chr12 HAVANA exon 109093350 109093469 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; exon_number 1; exon_id "ENSE00001805424.2"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
747 chr12 HAVANA exon 109092507 109092787 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; exon_number 2; exon_id "ENSE00001391659.2"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
748 chr12 HAVANA CDS 109092507 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; exon_number 2; exon_id "ENSE00001391659.2"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
749 chr12 HAVANA start_codon 109092784 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; exon_number 2; exon_id "ENSE00001391659.2"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
750 chr12 HAVANA exon 109090037 109090207 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; exon_number 3; exon_id "ENSE00002304266.1"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
751 chr12 HAVANA CDS 109090037 109090207 . - 2 gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; exon_number 3; exon_id "ENSE00002304266.1"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
752 chr12 HAVANA UTR 109093350 109093469 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; exon_number 1; exon_id "ENSE00001805424.2"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
753 chr12 HAVANA UTR 109092787 109092787 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536242.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-005"; exon_number 2; exon_id "ENSE00001391659.2"; level 2; protein_id "ENSP00000443042.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403064.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
754 chr12 HAVANA transcript 109090125 109093472 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536358.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-008"; level 2; protein_id "ENSP00000444103.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403065.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
755 chr12 HAVANA exon 109092507 109093472 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536358.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-008"; exon_number 1; exon_id "ENSE00002240759.1"; level 2; protein_id "ENSP00000444103.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403065.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
756 chr12 HAVANA CDS 109092507 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000536358.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-008"; exon_number 1; exon_id "ENSE00002240759.1"; level 2; protein_id "ENSP00000444103.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403065.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
757 chr12 HAVANA start_codon 109092784 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000536358.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-008"; exon_number 1; exon_id "ENSE00002240759.1"; level 2; protein_id "ENSP00000444103.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403065.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
758 chr12 HAVANA exon 109090125 109090207 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536358.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-008"; exon_number 2; exon_id "ENSE00002271553.1"; level 2; protein_id "ENSP00000444103.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403065.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
759 chr12 HAVANA CDS 109090125 109090207 . - 2 gene_id "ENSG00000189046.10"; transcript_id "ENST00000536358.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-008"; exon_number 2; exon_id "ENSE00002271553.1"; level 2; protein_id "ENSP00000444103.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403065.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
760 chr12 HAVANA UTR 109092787 109093472 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536358.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-008"; exon_number 1; exon_id "ENSE00002240759.1"; level 2; protein_id "ENSP00000444103.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403065.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
761 chr12 HAVANA transcript 109092255 109093631 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536720.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH2-004"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403066.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
762 chr12 HAVANA exon 109093247 109093631 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536720.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH2-004"; exon_number 1; exon_id "ENSE00002269612.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403066.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
763 chr12 HAVANA exon 109092255 109092937 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000536720.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH2-004"; exon_number 2; exon_id "ENSE00002252253.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000169246.4"; havana_transcript "OTTHUMT00000403066.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
764 chr12 ENSEMBL transcript 109088188 109093488 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
765 chr12 ENSEMBL exon 109093350 109093488 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 1; exon_id "ENSE00003739026.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
766 chr12 ENSEMBL exon 109092507 109092937 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 2; exon_id "ENSE00001732735.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
767 chr12 ENSEMBL CDS 109092507 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 2; exon_id "ENSE00001732735.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
768 chr12 ENSEMBL start_codon 109092784 109092786 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 2; exon_id "ENSE00001732735.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
769 chr12 ENSEMBL exon 109088188 109088512 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 3; exon_id "ENSE00003727947.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
770 chr12 ENSEMBL CDS 109088322 109088512 . - 2 gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 3; exon_id "ENSE00003727947.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
771 chr12 ENSEMBL stop_codon 109088319 109088321 . - 0 gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 3; exon_id "ENSE00003727947.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
772 chr12 ENSEMBL UTR 109093350 109093488 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 1; exon_id "ENSE00003739026.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
773 chr12 ENSEMBL UTR 109092787 109092937 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 2; exon_id "ENSE00001732735.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
774 chr12 ENSEMBL UTR 109088188 109088321 . - . gene_id "ENSG00000189046.10"; transcript_id "ENST00000619381.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH2-201"; exon_number 3; exon_id "ENSE00003727947.1"; level 3; protein_id "ENSP00000478765.1"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55883.1"; havana_gene "OTTHUMG00000169246.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
775 chr15 HAVANA transcript 49155656 49282067 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
776 chr15 HAVANA exon 49155656 49156016 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 1; exon_id "ENSE00002550928.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
777 chr15 HAVANA CDS 49155997 49156016 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 1; exon_id "ENSE00002550928.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
778 chr15 HAVANA start_codon 49155997 49155999 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 1; exon_id "ENSE00002550928.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
779 chr15 HAVANA exon 49161764 49161861 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 2; exon_id "ENSE00002555848.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
780 chr15 HAVANA CDS 49161764 49161861 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 2; exon_id "ENSE00002555848.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
781 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
782 chr15 HAVANA CDS 49201162 49201166 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
783 chr15 HAVANA stop_codon 49201167 49201169 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
784 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 4; exon_id "ENSE00003591689.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
785 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
786 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 6; exon_id "ENSE00003533918.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
787 chr15 HAVANA exon 49281987 49282067 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 7; exon_id "ENSE00002550912.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
788 chr15 HAVANA UTR 49155656 49155996 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 1; exon_id "ENSE00002550928.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
789 chr15 HAVANA UTR 49201167 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
790 chr15 HAVANA UTR 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 4; exon_id "ENSE00003591689.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
791 chr15 HAVANA UTR 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
792 chr15 HAVANA UTR 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 6; exon_id "ENSE00003533918.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
793 chr15 HAVANA UTR 49281987 49282067 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559883.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-007"; exon_number 7; exon_id "ENSE00002550912.1"; level 2; protein_id "ENSP00000453193.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417847.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
794 chr15 HAVANA transcript 49155759 49239330 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
795 chr15 HAVANA exon 49155759 49156016 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 1; exon_id "ENSE00002539363.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
796 chr15 HAVANA CDS 49155997 49156016 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 1; exon_id "ENSE00002539363.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
797 chr15 HAVANA start_codon 49155997 49155999 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 1; exon_id "ENSE00002539363.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
798 chr15 HAVANA exon 49161740 49161861 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 2; exon_id "ENSE00002541152.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
799 chr15 HAVANA CDS 49161740 49161861 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 2; exon_id "ENSE00002541152.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
800 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
801 chr15 HAVANA CDS 49201162 49201166 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
802 chr15 HAVANA stop_codon 49201167 49201169 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
803 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 4; exon_id "ENSE00003591689.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
804 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
805 chr15 HAVANA exon 49239221 49239330 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 6; exon_id "ENSE00003585384.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
806 chr15 HAVANA UTR 49155759 49155996 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 1; exon_id "ENSE00002539363.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
807 chr15 HAVANA UTR 49201167 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
808 chr15 HAVANA UTR 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 4; exon_id "ENSE00003591689.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
809 chr15 HAVANA UTR 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
810 chr15 HAVANA UTR 49239221 49239330 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559963.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-008"; exon_number 6; exon_id "ENSE00003585384.1"; level 2; protein_id "ENSP00000453457.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417848.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
811 chr15 HAVANA transcript 49155765 49331882 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
812 chr15 HAVANA exon 49155765 49156016 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 1; exon_id "ENSE00002547562.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
813 chr15 HAVANA CDS 49155997 49156016 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 1; exon_id "ENSE00002547562.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
814 chr15 HAVANA start_codon 49155997 49155999 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 1; exon_id "ENSE00002547562.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
815 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 2; exon_id "ENSE00003596830.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
816 chr15 HAVANA CDS 49201162 49201250 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 2; exon_id "ENSE00003596830.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
817 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
818 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
819 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
820 chr15 HAVANA CDS 49235851 49235941 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
821 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
822 chr15 HAVANA CDS 49239221 49239367 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
823 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 6; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
824 chr15 HAVANA CDS 49281987 49282085 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 6; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
825 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 7; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
826 chr15 HAVANA CDS 49283566 49283718 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 7; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
827 chr15 HAVANA exon 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 8; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
828 chr15 HAVANA CDS 49292327 49292537 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 8; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
829 chr15 HAVANA exon 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 9; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
830 chr15 HAVANA CDS 49319604 49319805 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 9; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
831 chr15 HAVANA exon 49327952 49331882 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 10; exon_id "ENSE00001406932.2"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
832 chr15 HAVANA CDS 49327952 49328156 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 10; exon_id "ENSE00001406932.2"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
833 chr15 HAVANA stop_codon 49328157 49328159 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 10; exon_id "ENSE00001406932.2"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
834 chr15 HAVANA UTR 49155765 49155996 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 1; exon_id "ENSE00002547562.1"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
835 chr15 HAVANA UTR 49328157 49331882 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000327171.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-001"; exon_number 10; exon_id "ENSE00001406932.2"; level 2; protein_id "ENSP00000316632.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32236.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417849.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
836 chr15 HAVANA transcript 49155771 49239330 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
837 chr15 HAVANA exon 49155771 49156016 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 1; exon_id "ENSE00002546850.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
838 chr15 HAVANA exon 49158845 49158968 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 2; exon_id "ENSE00002567593.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
839 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 3; exon_id "ENSE00003680093.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
840 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 3; exon_id "ENSE00003680093.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
841 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 3; exon_id "ENSE00003680093.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
842 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 4; exon_id "ENSE00003656462.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
843 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 4; exon_id "ENSE00003656462.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
844 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 5; exon_id "ENSE00003682735.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
845 chr15 HAVANA CDS 49235851 49235941 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 5; exon_id "ENSE00003682735.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
846 chr15 HAVANA exon 49239221 49239330 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 6; exon_id "ENSE00003503472.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
847 chr15 HAVANA CDS 49239221 49239330 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 6; exon_id "ENSE00003503472.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
848 chr15 HAVANA UTR 49155771 49156016 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 1; exon_id "ENSE00002546850.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
849 chr15 HAVANA UTR 49158845 49158968 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 2; exon_id "ENSE00002567593.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
850 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560654.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-022"; exon_number 3; exon_id "ENSE00003680093.1"; level 1; protein_id "ENSP00000453961.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417850.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
851 chr15 HAVANA transcript 49155775 49239348 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
852 chr15 HAVANA exon 49155775 49156016 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 1; exon_id "ENSE00002549129.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
853 chr15 HAVANA CDS 49155997 49156016 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 1; exon_id "ENSE00002549129.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
854 chr15 HAVANA start_codon 49155997 49155999 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 1; exon_id "ENSE00002549129.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
855 chr15 HAVANA exon 49161740 49161861 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 2; exon_id "ENSE00002541152.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
856 chr15 HAVANA CDS 49161740 49161861 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 2; exon_id "ENSE00002541152.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
857 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
858 chr15 HAVANA CDS 49201162 49201166 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
859 chr15 HAVANA stop_codon 49201167 49201169 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
860 chr15 HAVANA exon 49217173 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 4; exon_id "ENSE00002537239.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
861 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
862 chr15 HAVANA exon 49239221 49239348 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 6; exon_id "ENSE00002553626.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
863 chr15 HAVANA UTR 49155775 49155996 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 1; exon_id "ENSE00002549129.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
864 chr15 HAVANA UTR 49201167 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 3; exon_id "ENSE00003517227.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
865 chr15 HAVANA UTR 49217173 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 4; exon_id "ENSE00002537239.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
866 chr15 HAVANA UTR 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
867 chr15 HAVANA UTR 49239221 49239348 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558775.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-009"; exon_number 6; exon_id "ENSE00002553626.1"; level 2; protein_id "ENSP00000453849.1"; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417851.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
868 chr15 HAVANA transcript 49155794 49217297 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
869 chr15 HAVANA exon 49155794 49156016 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 1; exon_id "ENSE00002575506.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
870 chr15 HAVANA CDS 49155997 49156016 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 1; exon_id "ENSE00002575506.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
871 chr15 HAVANA start_codon 49155997 49155999 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 1; exon_id "ENSE00002575506.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
872 chr15 HAVANA exon 49195085 49195214 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 2; exon_id "ENSE00003674277.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
873 chr15 HAVANA CDS 49195085 49195199 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 2; exon_id "ENSE00003674277.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
874 chr15 HAVANA stop_codon 49195200 49195202 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 2; exon_id "ENSE00003674277.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
875 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 3; exon_id "ENSE00003576742.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
876 chr15 HAVANA exon 49217190 49217297 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 4; exon_id "ENSE00002541719.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
877 chr15 HAVANA UTR 49155794 49155996 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 1; exon_id "ENSE00002575506.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
878 chr15 HAVANA UTR 49195200 49195214 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 2; exon_id "ENSE00003674277.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
879 chr15 HAVANA UTR 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 3; exon_id "ENSE00003576742.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
880 chr15 HAVANA UTR 49217190 49217297 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561074.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-010"; exon_number 4; exon_id "ENSE00002541719.1"; level 2; protein_id "ENSP00000453241.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417852.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
881 chr15 HAVANA transcript 49155801 49226695 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-011"; level 2; tag "dotter_confirmed"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417853.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
882 chr15 HAVANA exon 49155801 49156016 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-011"; exon_number 1; exon_id "ENSE00002539478.1"; level 2; tag "dotter_confirmed"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417853.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
883 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-011"; exon_number 2; exon_id "ENSE00003576742.1"; level 2; tag "dotter_confirmed"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417853.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
884 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-011"; exon_number 3; exon_id "ENSE00003591689.1"; level 2; tag "dotter_confirmed"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417853.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
885 chr15 HAVANA exon 49223129 49223149 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-011"; exon_number 4; exon_id "ENSE00002546547.1"; level 2; tag "dotter_confirmed"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417853.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
886 chr15 HAVANA exon 49226675 49226695 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559040.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-011"; exon_number 5; exon_id "ENSE00002562566.1"; level 2; tag "dotter_confirmed"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417853.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
887 chr15 HAVANA transcript 49170016 49328518 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
888 chr15 HAVANA exon 49170016 49170375 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 1; exon_id "ENSE00002558243.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
889 chr15 HAVANA CDS 49170323 49170375 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 1; exon_id "ENSE00002558243.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
890 chr15 HAVANA start_codon 49170323 49170325 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 1; exon_id "ENSE00002558243.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
891 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 2; exon_id "ENSE00003596830.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
892 chr15 HAVANA CDS 49201162 49201250 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 2; exon_id "ENSE00003596830.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
893 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
894 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
895 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
896 chr15 HAVANA CDS 49235851 49235941 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
897 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
898 chr15 HAVANA CDS 49239221 49239367 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
899 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 6; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
900 chr15 HAVANA CDS 49281987 49282085 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 6; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
901 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 7; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
902 chr15 HAVANA CDS 49283566 49283718 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 7; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
903 chr15 HAVANA exon 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 8; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
904 chr15 HAVANA CDS 49292327 49292537 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 8; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
905 chr15 HAVANA exon 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 9; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
906 chr15 HAVANA CDS 49319604 49319805 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 9; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
907 chr15 HAVANA exon 49327952 49328518 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 10; exon_id "ENSE00002570120.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
908 chr15 HAVANA CDS 49327952 49328156 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 10; exon_id "ENSE00002570120.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
909 chr15 HAVANA stop_codon 49328157 49328159 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 10; exon_id "ENSE00002570120.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
910 chr15 HAVANA UTR 49170016 49170322 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 1; exon_id "ENSE00002558243.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
911 chr15 HAVANA UTR 49328157 49328518 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560031.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-003"; exon_number 10; exon_id "ENSE00002570120.1"; level 2; protein_id "ENSP00000453129.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42034.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417854.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
912 chr15 HAVANA transcript 49170204 49328514 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
913 chr15 HAVANA exon 49170204 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 1; exon_id "ENSE00002574923.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
914 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
915 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
916 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
917 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
918 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
919 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
920 chr15 HAVANA CDS 49235851 49235941 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
921 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
922 chr15 HAVANA CDS 49239221 49239367 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
923 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 6; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
924 chr15 HAVANA CDS 49281987 49282085 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 6; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
925 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 7; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
926 chr15 HAVANA CDS 49283566 49283718 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 7; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
927 chr15 HAVANA exon 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 8; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
928 chr15 HAVANA CDS 49292327 49292537 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 8; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
929 chr15 HAVANA exon 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 9; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
930 chr15 HAVANA CDS 49319604 49319805 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 9; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
931 chr15 HAVANA exon 49327952 49328514 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 10; exon_id "ENSE00002541269.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
932 chr15 HAVANA CDS 49327952 49328156 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 10; exon_id "ENSE00002541269.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
933 chr15 HAVANA stop_codon 49328157 49328159 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 10; exon_id "ENSE00002541269.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
934 chr15 HAVANA UTR 49170204 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 1; exon_id "ENSE00002574923.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
935 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
936 chr15 HAVANA UTR 49328157 49328514 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000396509.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-002"; exon_number 10; exon_id "ENSE00002541269.1"; level 2; protein_id "ENSP00000379766.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417855.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
937 chr15 HAVANA transcript 49170217 49239270 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
938 chr15 HAVANA exon 49170217 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 1; exon_id "ENSE00002562764.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
939 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
940 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
941 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
942 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
943 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
944 chr15 HAVANA exon 49225205 49225349 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
945 chr15 HAVANA CDS 49225205 49225241 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
946 chr15 HAVANA stop_codon 49225242 49225244 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
947 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
948 chr15 HAVANA exon 49239221 49239270 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 6; exon_id "ENSE00002546512.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
949 chr15 HAVANA UTR 49170217 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 1; exon_id "ENSE00002562764.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
950 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
951 chr15 HAVANA UTR 49225242 49225349 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
952 chr15 HAVANA UTR 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
953 chr15 HAVANA UTR 49239221 49239270 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-012"; exon_number 6; exon_id "ENSE00002546512.1"; level 2; protein_id "ENSP00000452679.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417856.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
954 chr15 HAVANA transcript 49170224 49283579 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
955 chr15 HAVANA exon 49170224 49170375 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 1; exon_id "ENSE00001525218.2"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
956 chr15 HAVANA CDS 49170323 49170375 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 1; exon_id "ENSE00001525218.2"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
957 chr15 HAVANA start_codon 49170323 49170325 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 1; exon_id "ENSE00001525218.2"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
958 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 2; exon_id "ENSE00003596830.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
959 chr15 HAVANA CDS 49201162 49201250 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 2; exon_id "ENSE00003596830.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
960 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
961 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
962 chr15 HAVANA exon 49225205 49225349 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
963 chr15 HAVANA CDS 49225205 49225241 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
964 chr15 HAVANA stop_codon 49225242 49225244 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
965 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
966 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 6; exon_id "ENSE00003533918.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
967 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 7; exon_id "ENSE00003686791.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
968 chr15 HAVANA exon 49283566 49283579 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 8; exon_id "ENSE00002544218.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
969 chr15 HAVANA UTR 49170224 49170322 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 1; exon_id "ENSE00001525218.2"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
970 chr15 HAVANA UTR 49225242 49225349 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
971 chr15 HAVANA UTR 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
972 chr15 HAVANA UTR 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 6; exon_id "ENSE00003533918.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
973 chr15 HAVANA UTR 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 7; exon_id "ENSE00003686791.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
974 chr15 HAVANA UTR 49283566 49283579 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-013"; exon_number 8; exon_id "ENSE00002544218.1"; level 2; protein_id "ENSP00000453844.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417857.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
975 chr15 HAVANA transcript 49170249 49194210 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559095.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-014"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417858.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
976 chr15 HAVANA exon 49170249 49170375 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559095.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-014"; exon_number 1; exon_id "ENSE00002570772.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417858.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
977 chr15 HAVANA exon 49193911 49194210 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559095.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-014"; exon_number 2; exon_id "ENSE00002547232.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417858.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
978 chr15 HAVANA transcript 49170260 49235897 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
979 chr15 HAVANA exon 49170260 49170375 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 1; exon_id "ENSE00002548657.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
980 chr15 HAVANA exon 49185614 49185674 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 2; exon_id "ENSE00002549071.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
981 chr15 HAVANA exon 49195085 49195214 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 3; exon_id "ENSE00003470379.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
982 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 4; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
983 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 4; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
984 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 4; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
985 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 5; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
986 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 5; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
987 chr15 HAVANA exon 49235851 49235897 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 6; exon_id "ENSE00002543492.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
988 chr15 HAVANA CDS 49235851 49235897 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 6; exon_id "ENSE00002543492.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
989 chr15 HAVANA UTR 49170260 49170375 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 1; exon_id "ENSE00002548657.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
990 chr15 HAVANA UTR 49185614 49185674 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 2; exon_id "ENSE00002549071.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
991 chr15 HAVANA UTR 49195085 49195214 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 3; exon_id "ENSE00003470379.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
992 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558145.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-015"; exon_number 4; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000454123.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417859.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
993 chr15 HAVANA transcript 49170260 49328529 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
994 chr15 HAVANA exon 49170260 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 1; exon_id "ENSE00002215051.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
995 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
996 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
997 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
998 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
999 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1000 chr15 HAVANA exon 49235625 49235739 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 4; exon_id "ENSE00003521593.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1001 chr15 HAVANA CDS 49235625 49235628 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 4; exon_id "ENSE00003521593.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1002 chr15 HAVANA stop_codon 49235629 49235631 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 4; exon_id "ENSE00003521593.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1003 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1004 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 6; exon_id "ENSE00003533918.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1005 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 7; exon_id "ENSE00003686791.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1006 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 8; exon_id "ENSE00003509157.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1007 chr15 HAVANA exon 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 9; exon_id "ENSE00003551552.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1008 chr15 HAVANA exon 49318972 49319116 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 10; exon_id "ENSE00003540115.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1009 chr15 HAVANA exon 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 11; exon_id "ENSE00003593336.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1010 chr15 HAVANA exon 49327952 49328529 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 12; exon_id "ENSE00002293232.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1011 chr15 HAVANA UTR 49170260 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 1; exon_id "ENSE00002215051.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1012 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1013 chr15 HAVANA UTR 49235629 49235739 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 4; exon_id "ENSE00003521593.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1014 chr15 HAVANA UTR 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1015 chr15 HAVANA UTR 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 6; exon_id "ENSE00003533918.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1016 chr15 HAVANA UTR 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 7; exon_id "ENSE00003686791.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1017 chr15 HAVANA UTR 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 8; exon_id "ENSE00003509157.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1018 chr15 HAVANA UTR 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 9; exon_id "ENSE00003551552.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1019 chr15 HAVANA UTR 49318972 49319116 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 10; exon_id "ENSE00003540115.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1020 chr15 HAVANA UTR 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 11; exon_id "ENSE00003593336.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1021 chr15 HAVANA UTR 49327952 49328529 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560119.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-004"; exon_number 12; exon_id "ENSE00002293232.1"; level 2; protein_id "ENSP00000453909.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1022 chr15 HAVANA transcript 49170282 49328561 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1023 chr15 HAVANA exon 49170282 49170375 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 1; exon_id "ENSE00002243530.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1024 chr15 HAVANA exon 49195085 49195214 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 2; exon_id "ENSE00003470379.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1025 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 3; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1026 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 3; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1027 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 3; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1028 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 4; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1029 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 4; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1030 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 5; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1031 chr15 HAVANA CDS 49235851 49235941 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 5; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1032 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 6; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1033 chr15 HAVANA CDS 49239221 49239367 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 6; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1034 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 7; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1035 chr15 HAVANA CDS 49281987 49282085 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 7; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1036 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 8; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1037 chr15 HAVANA CDS 49283566 49283718 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 8; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1038 chr15 HAVANA exon 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 9; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1039 chr15 HAVANA CDS 49292327 49292537 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 9; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1040 chr15 HAVANA exon 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 10; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1041 chr15 HAVANA CDS 49319604 49319805 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 10; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1042 chr15 HAVANA exon 49327952 49328561 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 11; exon_id "ENSE00002282962.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1043 chr15 HAVANA CDS 49327952 49328156 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 11; exon_id "ENSE00002282962.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1044 chr15 HAVANA stop_codon 49328157 49328159 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 11; exon_id "ENSE00002282962.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1045 chr15 HAVANA UTR 49170282 49170375 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 1; exon_id "ENSE00002243530.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1046 chr15 HAVANA UTR 49195085 49195214 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 2; exon_id "ENSE00003470379.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1047 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 3; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1048 chr15 HAVANA UTR 49328157 49328561 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000544523.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-005"; exon_number 11; exon_id "ENSE00002282962.1"; level 2; protein_id "ENSP00000440312.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1049 chr15 HAVANA transcript 49170283 49292422 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1050 chr15 HAVANA exon 49170283 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 1; exon_id "ENSE00002560482.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1051 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1052 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1053 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1054 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1055 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1056 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1057 chr15 HAVANA CDS 49235851 49235941 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1058 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1059 chr15 HAVANA CDS 49239221 49239367 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1060 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 6; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1061 chr15 HAVANA CDS 49283566 49283718 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 6; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1062 chr15 HAVANA exon 49292381 49292422 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 7; exon_id "ENSE00002574228.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1063 chr15 HAVANA CDS 49292381 49292422 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 7; exon_id "ENSE00002574228.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1064 chr15 HAVANA UTR 49170283 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 1; exon_id "ENSE00002560482.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1065 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560138.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-016"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000452614.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417862.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1066 chr15 HAVANA transcript 49170312 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1067 chr15 HAVANA exon 49170312 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 1; exon_id "ENSE00002552501.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1068 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1069 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1070 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1071 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1072 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1073 chr15 HAVANA exon 49225205 49225349 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1074 chr15 HAVANA CDS 49225205 49225241 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1075 chr15 HAVANA stop_codon 49225242 49225244 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1076 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1077 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 6; exon_id "ENSE00003533918.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1078 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 7; exon_id "ENSE00003686791.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1079 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 8; exon_id "ENSE00003509157.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1080 chr15 HAVANA UTR 49170312 49170358 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 1; exon_id "ENSE00002552501.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1081 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1082 chr15 HAVANA UTR 49225242 49225349 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 4; exon_id "ENSE00002556218.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1083 chr15 HAVANA UTR 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 5; exon_id "ENSE00003468619.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1084 chr15 HAVANA UTR 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 6; exon_id "ENSE00003533918.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1085 chr15 HAVANA UTR 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 7; exon_id "ENSE00003686791.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1086 chr15 HAVANA UTR 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559423.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK2-017"; exon_number 8; exon_id "ENSE00003509157.1"; level 2; protein_id "ENSP00000453652.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1087 chr15 HAVANA transcript 49170478 49328503 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1088 chr15 HAVANA exon 49170478 49170577 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 1; exon_id "ENSE00002549086.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1089 chr15 HAVANA exon 49201162 49201250 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1090 chr15 HAVANA CDS 49201181 49201250 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1091 chr15 HAVANA start_codon 49201181 49201183 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1092 chr15 HAVANA exon 49217190 49217313 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1093 chr15 HAVANA CDS 49217190 49217313 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 3; exon_id "ENSE00003656462.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1094 chr15 HAVANA exon 49235851 49235941 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1095 chr15 HAVANA CDS 49235851 49235941 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 4; exon_id "ENSE00003682735.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1096 chr15 HAVANA exon 49239221 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1097 chr15 HAVANA CDS 49239221 49239367 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 5; exon_id "ENSE00003528785.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1098 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 6; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1099 chr15 HAVANA CDS 49281987 49282085 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 6; exon_id "ENSE00003628224.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1100 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 7; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1101 chr15 HAVANA CDS 49283566 49283718 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 7; exon_id "ENSE00003458850.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1102 chr15 HAVANA exon 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 8; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1103 chr15 HAVANA CDS 49292327 49292537 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 8; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1104 chr15 HAVANA exon 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 9; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1105 chr15 HAVANA CDS 49319604 49319805 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 9; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1106 chr15 HAVANA exon 49327952 49328503 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 10; exon_id "ENSE00002546212.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1107 chr15 HAVANA CDS 49327952 49328156 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 10; exon_id "ENSE00002546212.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1108 chr15 HAVANA stop_codon 49328157 49328159 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 10; exon_id "ENSE00002546212.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1109 chr15 HAVANA UTR 49170478 49170577 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 1; exon_id "ENSE00002549086.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1110 chr15 HAVANA UTR 49201162 49201180 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 2; exon_id "ENSE00003680093.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1111 chr15 HAVANA UTR 49328157 49328503 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559454.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-006"; exon_number 10; exon_id "ENSE00002546212.1"; level 2; protein_id "ENSP00000453133.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS73724.1"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1112 chr15 HAVANA transcript 49239220 49319707 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561014.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-018"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417865.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1113 chr15 HAVANA exon 49239220 49239367 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561014.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-018"; exon_number 1; exon_id "ENSE00002554877.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417865.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1114 chr15 HAVANA exon 49281987 49282085 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561014.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-018"; exon_number 2; exon_id "ENSE00003686791.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417865.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1115 chr15 HAVANA exon 49283566 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561014.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-018"; exon_number 3; exon_id "ENSE00003509157.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417865.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1116 chr15 HAVANA exon 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561014.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-018"; exon_number 4; exon_id "ENSE00003551552.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417865.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1117 chr15 HAVANA exon 49318111 49318192 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561014.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-018"; exon_number 5; exon_id "ENSE00002570191.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417865.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1118 chr15 HAVANA exon 49319604 49319707 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000561014.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "GALK2-018"; exon_number 6; exon_id "ENSE00002554955.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417865.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1119 chr15 HAVANA transcript 49283706 49367869 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1120 chr15 HAVANA exon 49283706 49283718 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 1; exon_id "ENSE00002565530.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1121 chr15 HAVANA CDS 49283706 49283718 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 1; exon_id "ENSE00002565530.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1122 chr15 HAVANA exon 49292327 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 2; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1123 chr15 HAVANA CDS 49292327 49292537 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 2; exon_id "ENSE00003546714.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1124 chr15 HAVANA exon 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 3; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1125 chr15 HAVANA CDS 49319604 49319805 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 3; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1126 chr15 HAVANA exon 49367491 49367869 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 4; exon_id "ENSE00002553681.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1127 chr15 HAVANA CDS 49367491 49367533 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 4; exon_id "ENSE00002553681.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1128 chr15 HAVANA stop_codon 49367534 49367536 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 4; exon_id "ENSE00002553681.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1129 chr15 HAVANA UTR 49367534 49367869 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000558399.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-020"; exon_number 4; exon_id "ENSE00002553681.1"; level 2; protein_id "ENSP00000453252.1"; tag "cds_start_NF"; tag "dotter_confirmed"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417866.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1130 chr15 HAVANA transcript 49292471 49367697 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1131 chr15 HAVANA exon 49292471 49292537 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 1; exon_id "ENSE00002537517.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1132 chr15 HAVANA CDS 49292471 49292537 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 1; exon_id "ENSE00002537517.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1133 chr15 HAVANA exon 49319604 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 2; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1134 chr15 HAVANA CDS 49319604 49319805 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 2; exon_id "ENSE00003514630.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1135 chr15 HAVANA exon 49327952 49328130 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 3; exon_id "ENSE00002544969.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1136 chr15 HAVANA CDS 49327952 49328130 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 3; exon_id "ENSE00002544969.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1137 chr15 HAVANA exon 49367491 49367697 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 4; exon_id "ENSE00002547468.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1138 chr15 HAVANA CDS 49367491 49367528 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 4; exon_id "ENSE00002547468.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1139 chr15 HAVANA stop_codon 49367529 49367531 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 4; exon_id "ENSE00002547468.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1140 chr15 HAVANA UTR 49367529 49367697 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000559580.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-021"; exon_number 4; exon_id "ENSE00002547468.1"; level 2; protein_id "ENSP00000453257.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417867.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1141 chr15 HAVANA transcript 49319682 49328982 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1142 chr15 HAVANA exon 49319682 49319805 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; exon_number 1; exon_id "ENSE00002565846.1"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1143 chr15 HAVANA CDS 49319682 49319805 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; exon_number 1; exon_id "ENSE00002565846.1"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1144 chr15 HAVANA exon 49327952 49328130 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; exon_number 2; exon_id "ENSE00002544969.1"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1145 chr15 HAVANA CDS 49327952 49328130 . + 1 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; exon_number 2; exon_id "ENSE00002544969.1"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1146 chr15 HAVANA exon 49328666 49328982 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; exon_number 3; exon_id "ENSE00002541466.1"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1147 chr15 HAVANA CDS 49328666 49328691 . + 2 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; exon_number 3; exon_id "ENSE00002541466.1"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1148 chr15 HAVANA stop_codon 49328692 49328694 . + 0 gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; exon_number 3; exon_id "ENSE00002541466.1"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1149 chr15 HAVANA UTR 49328692 49328982 . + . gene_id "ENSG00000156958.14"; transcript_id "ENST00000560528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK2-019"; exon_number 3; exon_id "ENSE00002541466.1"; level 2; protein_id "ENSP00000452637.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000172325.3"; havana_transcript "OTTHUMT00000417868.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1150 chr7 HAVANA transcript 91940867 92110673 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1151 chr7 HAVANA exon 91940867 91941147 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 1; exon_id "ENSE00001396791.3"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1152 chr7 HAVANA CDS 91941100 91941147 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 1; exon_id "ENSE00001396791.3"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1153 chr7 HAVANA start_codon 91941100 91941102 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 1; exon_id "ENSE00001396791.3"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1154 chr7 HAVANA exon 91973711 91973968 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 2; exon_id "ENSE00003682193.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1155 chr7 HAVANA CDS 91973711 91973968 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 2; exon_id "ENSE00003682193.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1156 chr7 HAVANA exon 91980289 91980333 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 3; exon_id "ENSE00003617904.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1157 chr7 HAVANA CDS 91980289 91980333 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 3; exon_id "ENSE00003617904.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1158 chr7 HAVANA exon 91992158 91992211 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 4; exon_id "ENSE00003584199.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1159 chr7 HAVANA CDS 91992158 91992211 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 4; exon_id "ENSE00003584199.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1160 chr7 HAVANA exon 91992885 91993055 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 5; exon_id "ENSE00003575362.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1161 chr7 HAVANA CDS 91992885 91993055 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 5; exon_id "ENSE00003575362.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1162 chr7 HAVANA exon 91994621 91994776 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 6; exon_id "ENSE00003515378.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1163 chr7 HAVANA CDS 91994621 91994776 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 6; exon_id "ENSE00003515378.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1164 chr7 HAVANA exon 91995603 91995800 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 7; exon_id "ENSE00003462858.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1165 chr7 HAVANA CDS 91995603 91995800 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 7; exon_id "ENSE00003462858.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1166 chr7 HAVANA exon 92000848 92003235 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 8; exon_id "ENSE00003484877.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1167 chr7 HAVANA CDS 92000848 92003235 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 8; exon_id "ENSE00003484877.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1168 chr7 HAVANA exon 92012429 92012642 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 9; exon_id "ENSE00003610052.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1169 chr7 HAVANA CDS 92012429 92012642 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 9; exon_id "ENSE00003610052.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1170 chr7 HAVANA exon 92014249 92014328 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 10; exon_id "ENSE00003565503.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1171 chr7 HAVANA CDS 92014249 92014328 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 10; exon_id "ENSE00003565503.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1172 chr7 HAVANA exon 92016129 92016267 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 11; exon_id "ENSE00003542008.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1173 chr7 HAVANA CDS 92016129 92016267 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 11; exon_id "ENSE00003542008.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1174 chr7 HAVANA exon 92017017 92017102 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 12; exon_id "ENSE00003529688.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1175 chr7 HAVANA CDS 92017017 92017102 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 12; exon_id "ENSE00003529688.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1176 chr7 HAVANA exon 92022238 92022352 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 13; exon_id "ENSE00003563282.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1177 chr7 HAVANA CDS 92022238 92022352 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 13; exon_id "ENSE00003563282.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1178 chr7 HAVANA exon 92022814 92023009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 14; exon_id "ENSE00003631847.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1179 chr7 HAVANA CDS 92022814 92023009 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 14; exon_id "ENSE00003631847.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1180 chr7 HAVANA exon 92029895 92029991 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 15; exon_id "ENSE00003518175.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1181 chr7 HAVANA CDS 92029895 92029991 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 15; exon_id "ENSE00003518175.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1182 chr7 HAVANA exon 92031512 92031604 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 16; exon_id "ENSE00003550230.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1183 chr7 HAVANA CDS 92031512 92031604 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 16; exon_id "ENSE00003550230.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1184 chr7 HAVANA exon 92038419 92038772 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 17; exon_id "ENSE00003575995.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1185 chr7 HAVANA CDS 92038419 92038772 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 17; exon_id "ENSE00003575995.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1186 chr7 HAVANA exon 92040674 92040898 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 18; exon_id "ENSE00001031186.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1187 chr7 HAVANA CDS 92040674 92040898 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 18; exon_id "ENSE00001031186.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1188 chr7 HAVANA exon 92042046 92042186 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 19; exon_id "ENSE00000918952.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1189 chr7 HAVANA CDS 92042046 92042186 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 19; exon_id "ENSE00000918952.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1190 chr7 HAVANA exon 92042668 92042771 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 20; exon_id "ENSE00000918951.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1191 chr7 HAVANA CDS 92042668 92042771 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 20; exon_id "ENSE00000918951.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1192 chr7 HAVANA exon 92045008 92045213 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 21; exon_id "ENSE00000918950.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1193 chr7 HAVANA CDS 92045008 92045213 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 21; exon_id "ENSE00000918950.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1194 chr7 HAVANA exon 92052726 92052958 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 22; exon_id "ENSE00000918949.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1195 chr7 HAVANA CDS 92052726 92052958 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 22; exon_id "ENSE00000918949.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1196 chr7 HAVANA exon 92061260 92061422 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 23; exon_id "ENSE00003563337.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1197 chr7 HAVANA CDS 92061260 92061422 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 23; exon_id "ENSE00003563337.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1198 chr7 HAVANA exon 92062274 92062486 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 24; exon_id "ENSE00003637094.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1199 chr7 HAVANA CDS 92062274 92062486 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 24; exon_id "ENSE00003637094.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1200 chr7 HAVANA exon 92065231 92065463 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 25; exon_id "ENSE00002707317.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1201 chr7 HAVANA CDS 92065231 92065463 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 25; exon_id "ENSE00002707317.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1202 chr7 HAVANA exon 92066427 92066546 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 26; exon_id "ENSE00002523196.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1203 chr7 HAVANA CDS 92066427 92066546 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 26; exon_id "ENSE00002523196.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1204 chr7 HAVANA exon 92070030 92070206 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 27; exon_id "ENSE00002440884.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1205 chr7 HAVANA CDS 92070030 92070206 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 27; exon_id "ENSE00002440884.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1206 chr7 HAVANA exon 92070905 92071009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 28; exon_id "ENSE00002504189.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1207 chr7 HAVANA CDS 92070905 92071009 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 28; exon_id "ENSE00002504189.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1208 chr7 HAVANA exon 92076855 92077007 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 29; exon_id "ENSE00002432222.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1209 chr7 HAVANA CDS 92076855 92077007 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 29; exon_id "ENSE00002432222.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1210 chr7 HAVANA exon 92077696 92077875 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 30; exon_id "ENSE00002469294.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1211 chr7 HAVANA CDS 92077696 92077875 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 30; exon_id "ENSE00002469294.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1212 chr7 HAVANA exon 92079079 92080152 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 31; exon_id "ENSE00000918940.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1213 chr7 HAVANA CDS 92079079 92080152 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 31; exon_id "ENSE00000918940.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1214 chr7 HAVANA exon 92082522 92082662 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 32; exon_id "ENSE00001747828.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1215 chr7 HAVANA CDS 92082522 92082662 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 32; exon_id "ENSE00001747828.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1216 chr7 HAVANA exon 92083170 92083655 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 33; exon_id "ENSE00001765764.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1217 chr7 HAVANA CDS 92083170 92083655 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 33; exon_id "ENSE00001765764.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1218 chr7 HAVANA exon 92084640 92084703 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 34; exon_id "ENSE00001615779.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1219 chr7 HAVANA CDS 92084640 92084703 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 34; exon_id "ENSE00001615779.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1220 chr7 HAVANA exon 92084819 92084940 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 35; exon_id "ENSE00001727716.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1221 chr7 HAVANA CDS 92084819 92084940 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 35; exon_id "ENSE00001727716.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1222 chr7 HAVANA exon 92085495 92085686 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 36; exon_id "ENSE00001610507.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1223 chr7 HAVANA CDS 92085495 92085686 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 36; exon_id "ENSE00001610507.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1224 chr7 HAVANA exon 92086228 92086416 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 37; exon_id "ENSE00000918935.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1225 chr7 HAVANA CDS 92086228 92086416 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 37; exon_id "ENSE00000918935.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1226 chr7 HAVANA exon 92089385 92089529 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 38; exon_id "ENSE00000434664.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1227 chr7 HAVANA CDS 92089385 92089529 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 38; exon_id "ENSE00000434664.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1228 chr7 HAVANA exon 92093097 92093316 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 39; exon_id "ENSE00000434665.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1229 chr7 HAVANA CDS 92093097 92093316 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 39; exon_id "ENSE00000434665.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1230 chr7 HAVANA exon 92095023 92095173 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 40; exon_id "ENSE00003490760.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1231 chr7 HAVANA CDS 92095023 92095173 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 40; exon_id "ENSE00003490760.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1232 chr7 HAVANA exon 92096689 92097357 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 41; exon_id "ENSE00003522563.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1233 chr7 HAVANA CDS 92096689 92097357 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 41; exon_id "ENSE00003522563.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1234 chr7 HAVANA exon 92097586 92097794 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 42; exon_id "ENSE00003464483.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1235 chr7 HAVANA CDS 92097586 92097794 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 42; exon_id "ENSE00003464483.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1236 chr7 HAVANA exon 92098109 92098214 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 43; exon_id "ENSE00003608380.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1237 chr7 HAVANA CDS 92098109 92098214 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 43; exon_id "ENSE00003608380.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1238 chr7 HAVANA exon 92099687 92099869 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 44; exon_id "ENSE00003662552.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1239 chr7 HAVANA CDS 92099687 92099869 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 44; exon_id "ENSE00003662552.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1240 chr7 HAVANA exon 92100856 92101056 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 45; exon_id "ENSE00003596992.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1241 chr7 HAVANA CDS 92100856 92101056 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 45; exon_id "ENSE00003596992.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1242 chr7 HAVANA exon 92102594 92102826 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 46; exon_id "ENSE00003476965.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1243 chr7 HAVANA CDS 92102594 92102826 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 46; exon_id "ENSE00003476965.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1244 chr7 HAVANA exon 92105678 92105763 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 47; exon_id "ENSE00003671590.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1245 chr7 HAVANA CDS 92105678 92105763 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 47; exon_id "ENSE00003671590.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1246 chr7 HAVANA exon 92107293 92107422 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 48; exon_id "ENSE00003561325.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1247 chr7 HAVANA CDS 92107293 92107422 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 48; exon_id "ENSE00003561325.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1248 chr7 HAVANA exon 92108494 92108633 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 49; exon_id "ENSE00003666256.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1249 chr7 HAVANA CDS 92108494 92108633 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 49; exon_id "ENSE00003666256.1"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1250 chr7 HAVANA exon 92110122 92110673 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 50; exon_id "ENSE00001518744.2"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1251 chr7 HAVANA CDS 92110122 92110156 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 50; exon_id "ENSE00001518744.2"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1252 chr7 HAVANA stop_codon 92110157 92110159 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 50; exon_id "ENSE00001518744.2"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1253 chr7 HAVANA UTR 91940867 91941099 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 1; exon_id "ENSE00001396791.3"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1254 chr7 HAVANA UTR 92110157 92110673 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000356239.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-001"; exon_number 50; exon_id "ENSE00001518744.2"; level 2; protein_id "ENSP00000348573.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5622.1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000253808.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1255 chr7 HAVANA transcript 91940916 92041781 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1256 chr7 HAVANA exon 91940916 91941147 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 1; exon_id "ENSE00001930873.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1257 chr7 HAVANA exon 91970473 91970508 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 2; exon_id "ENSE00003468198.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1258 chr7 HAVANA exon 91973711 91973968 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 3; exon_id "ENSE00003494666.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1259 chr7 HAVANA exon 91980289 91980333 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 4; exon_id "ENSE00003653657.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1260 chr7 HAVANA exon 91992158 91992211 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 5; exon_id "ENSE00003575605.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1261 chr7 HAVANA exon 91992885 91993055 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 6; exon_id "ENSE00003470191.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1262 chr7 HAVANA exon 91994621 91994776 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 7; exon_id "ENSE00003625264.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1263 chr7 HAVANA exon 91995603 91995800 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 8; exon_id "ENSE00003570192.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1264 chr7 HAVANA exon 92000848 92003235 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 9; exon_id "ENSE00003498003.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1265 chr7 HAVANA exon 92012429 92012642 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 10; exon_id "ENSE00003488961.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1266 chr7 HAVANA exon 92014249 92014328 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 11; exon_id "ENSE00003491371.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1267 chr7 HAVANA exon 92016129 92016267 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 12; exon_id "ENSE00003536418.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1268 chr7 HAVANA exon 92017017 92017102 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 13; exon_id "ENSE00003559747.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1269 chr7 HAVANA exon 92022238 92022352 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 14; exon_id "ENSE00003497590.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1270 chr7 HAVANA exon 92022814 92023009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 15; exon_id "ENSE00003619808.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1271 chr7 HAVANA exon 92029895 92029991 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 16; exon_id "ENSE00003471162.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1272 chr7 HAVANA exon 92031512 92031604 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 17; exon_id "ENSE00003565984.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1273 chr7 HAVANA exon 92038419 92038772 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 18; exon_id "ENSE00003693669.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1274 chr7 HAVANA exon 92040674 92041781 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493453.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-003"; exon_number 19; exon_id "ENSE00001518834.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258933.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1275 chr7 HAVANA transcript 91940926 91996052 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1276 chr7 HAVANA exon 91940926 91941147 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 1; exon_id "ENSE00001518828.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1277 chr7 HAVANA CDS 91941100 91941147 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 1; exon_id "ENSE00001518828.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1278 chr7 HAVANA start_codon 91941100 91941102 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 1; exon_id "ENSE00001518828.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1279 chr7 HAVANA exon 91973711 91973968 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 2; exon_id "ENSE00003682193.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1280 chr7 HAVANA CDS 91973711 91973968 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 2; exon_id "ENSE00003682193.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1281 chr7 HAVANA exon 91980289 91980333 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 3; exon_id "ENSE00003617904.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1282 chr7 HAVANA CDS 91980289 91980333 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 3; exon_id "ENSE00003617904.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1283 chr7 HAVANA exon 91992158 91992211 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 4; exon_id "ENSE00003584199.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1284 chr7 HAVANA CDS 91992158 91992211 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 4; exon_id "ENSE00003584199.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1285 chr7 HAVANA exon 91992885 91993055 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 5; exon_id "ENSE00003575362.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1286 chr7 HAVANA CDS 91992885 91993055 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 5; exon_id "ENSE00003575362.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1287 chr7 HAVANA exon 91994621 91994776 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 6; exon_id "ENSE00003515378.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1288 chr7 HAVANA CDS 91994621 91994776 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 6; exon_id "ENSE00003515378.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1289 chr7 HAVANA exon 91995603 91996052 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 7; exon_id "ENSE00001518827.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1290 chr7 HAVANA CDS 91995603 91995812 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 7; exon_id "ENSE00001518827.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1291 chr7 HAVANA stop_codon 91995813 91995815 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 7; exon_id "ENSE00001518827.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1292 chr7 HAVANA UTR 91940926 91941099 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 1; exon_id "ENSE00001518828.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1293 chr7 HAVANA UTR 91995813 91996052 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394564.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-002"; exon_number 7; exon_id "ENSE00001518827.1"; level 2; protein_id "ENSP00000378065.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258932.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1294 chr7 HAVANA transcript 91973756 91995713 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1295 chr7 HAVANA exon 91973756 91973968 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 1; exon_id "ENSE00001776917.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1296 chr7 HAVANA CDS 91973756 91973968 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 1; exon_id "ENSE00001776917.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1297 chr7 HAVANA exon 91980289 91980333 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 2; exon_id "ENSE00003617904.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1298 chr7 HAVANA CDS 91980289 91980333 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 2; exon_id "ENSE00003617904.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1299 chr7 HAVANA exon 91992885 91993055 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 3; exon_id "ENSE00003575362.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1300 chr7 HAVANA CDS 91992885 91993055 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 3; exon_id "ENSE00003575362.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1301 chr7 HAVANA exon 91994621 91994776 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 4; exon_id "ENSE00003515378.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1302 chr7 HAVANA CDS 91994621 91994776 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 4; exon_id "ENSE00003515378.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1303 chr7 HAVANA exon 91995603 91995713 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 5; exon_id "ENSE00001715230.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1304 chr7 HAVANA CDS 91995603 91995713 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000438114.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-011"; exon_number 5; exon_id "ENSE00001715230.1"; level 2; protein_id "ENSP00000391704.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342891.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1305 chr7 HAVANA transcript 92040704 92043143 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000484815.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-008"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258938.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1306 chr7 HAVANA exon 92040704 92040898 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000484815.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-008"; exon_number 1; exon_id "ENSE00001955689.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258938.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1307 chr7 HAVANA exon 92042668 92043143 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000484815.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-008"; exon_number 2; exon_id "ENSE00001931067.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258938.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1308 chr7 HAVANA transcript 92057626 92065454 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000491695.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AKAP9-004"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258934.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1309 chr7 HAVANA exon 92057626 92058414 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000491695.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AKAP9-004"; exon_number 1; exon_id "ENSE00001893769.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258934.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1310 chr7 HAVANA exon 92061260 92061422 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000491695.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AKAP9-004"; exon_number 2; exon_id "ENSE00003561607.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258934.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1311 chr7 HAVANA exon 92062274 92062486 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000491695.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AKAP9-004"; exon_number 3; exon_id "ENSE00003464600.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258934.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1312 chr7 HAVANA exon 92065231 92065454 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000491695.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AKAP9-004"; exon_number 4; exon_id "ENSE00001894514.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258934.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1313 chr7 HAVANA transcript 92070138 92109061 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1314 chr7 HAVANA exon 92070138 92070182 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 1; exon_id "ENSE00001642282.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1315 chr7 HAVANA CDS 92070138 92070182 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 1; exon_id "ENSE00001642282.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1316 chr7 HAVANA exon 92070905 92071009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 2; exon_id "ENSE00002504189.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1317 chr7 HAVANA CDS 92070905 92071009 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 2; exon_id "ENSE00002504189.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1318 chr7 HAVANA exon 92076855 92077007 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 3; exon_id "ENSE00002432222.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1319 chr7 HAVANA CDS 92076855 92077007 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 3; exon_id "ENSE00002432222.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1320 chr7 HAVANA exon 92077696 92077875 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 4; exon_id "ENSE00002469294.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1321 chr7 HAVANA CDS 92077696 92077875 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 4; exon_id "ENSE00002469294.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1322 chr7 HAVANA exon 92079079 92080152 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 5; exon_id "ENSE00000918940.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1323 chr7 HAVANA CDS 92079079 92080152 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 5; exon_id "ENSE00000918940.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1324 chr7 HAVANA exon 92082522 92082662 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 6; exon_id "ENSE00001747828.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1325 chr7 HAVANA CDS 92082522 92082662 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 6; exon_id "ENSE00001747828.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1326 chr7 HAVANA exon 92083170 92083655 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 7; exon_id "ENSE00001765764.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1327 chr7 HAVANA CDS 92083170 92083655 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 7; exon_id "ENSE00001765764.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1328 chr7 HAVANA exon 92084640 92084703 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 8; exon_id "ENSE00001615779.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1329 chr7 HAVANA CDS 92084640 92084703 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 8; exon_id "ENSE00001615779.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1330 chr7 HAVANA exon 92084819 92084940 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 9; exon_id "ENSE00001727716.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1331 chr7 HAVANA CDS 92084819 92084940 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 9; exon_id "ENSE00001727716.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1332 chr7 HAVANA exon 92085495 92085686 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 10; exon_id "ENSE00001610507.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1333 chr7 HAVANA CDS 92085495 92085686 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 10; exon_id "ENSE00001610507.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1334 chr7 HAVANA exon 92086228 92086416 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 11; exon_id "ENSE00000918935.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1335 chr7 HAVANA CDS 92086228 92086416 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 11; exon_id "ENSE00000918935.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1336 chr7 HAVANA exon 92089385 92089529 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 12; exon_id "ENSE00000434664.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1337 chr7 HAVANA CDS 92089385 92089529 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 12; exon_id "ENSE00000434664.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1338 chr7 HAVANA exon 92093097 92093316 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 13; exon_id "ENSE00000434665.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1339 chr7 HAVANA CDS 92093097 92093316 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 13; exon_id "ENSE00000434665.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1340 chr7 HAVANA exon 92095023 92095173 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 14; exon_id "ENSE00003490760.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1341 chr7 HAVANA CDS 92095023 92095173 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 14; exon_id "ENSE00003490760.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1342 chr7 HAVANA exon 92096689 92097357 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 15; exon_id "ENSE00003522563.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1343 chr7 HAVANA CDS 92096689 92097357 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 15; exon_id "ENSE00003522563.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1344 chr7 HAVANA exon 92097586 92097794 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 16; exon_id "ENSE00003464483.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1345 chr7 HAVANA CDS 92097586 92097794 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 16; exon_id "ENSE00003464483.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1346 chr7 HAVANA exon 92098109 92098214 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 17; exon_id "ENSE00003608380.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1347 chr7 HAVANA CDS 92098109 92098214 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 17; exon_id "ENSE00003608380.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1348 chr7 HAVANA exon 92099687 92099869 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 18; exon_id "ENSE00003662552.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1349 chr7 HAVANA CDS 92099687 92099869 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 18; exon_id "ENSE00003662552.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1350 chr7 HAVANA exon 92100856 92101056 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 19; exon_id "ENSE00003596992.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1351 chr7 HAVANA CDS 92100856 92101056 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 19; exon_id "ENSE00003596992.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1352 chr7 HAVANA exon 92102594 92102826 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 20; exon_id "ENSE00003476965.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1353 chr7 HAVANA CDS 92102594 92102826 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 20; exon_id "ENSE00003476965.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1354 chr7 HAVANA exon 92105678 92105763 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 21; exon_id "ENSE00003671590.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1355 chr7 HAVANA CDS 92105678 92105763 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 21; exon_id "ENSE00003671590.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1356 chr7 HAVANA exon 92107293 92107422 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 22; exon_id "ENSE00003561325.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1357 chr7 HAVANA CDS 92107293 92107422 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 22; exon_id "ENSE00003561325.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1358 chr7 HAVANA exon 92108494 92109061 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 23; exon_id "ENSE00001692787.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1359 chr7 HAVANA CDS 92108494 92108716 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 23; exon_id "ENSE00001692787.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1360 chr7 HAVANA stop_codon 92108717 92108719 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 23; exon_id "ENSE00001692787.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1361 chr7 HAVANA UTR 92108717 92109061 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000394534.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-006"; exon_number 23; exon_id "ENSE00001692787.1"; level 2; protein_id "ENSP00000378042.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258936.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1362 chr7 HAVANA transcript 92083576 92090641 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1363 chr7 HAVANA exon 92083576 92083655 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 1; exon_id "ENSE00001630696.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1364 chr7 HAVANA CDS 92083576 92083655 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 1; exon_id "ENSE00001630696.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1365 chr7 HAVANA exon 92084640 92084703 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 2; exon_id "ENSE00001615779.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1366 chr7 HAVANA CDS 92084640 92084703 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 2; exon_id "ENSE00001615779.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1367 chr7 HAVANA exon 92084819 92084940 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 3; exon_id "ENSE00001727716.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1368 chr7 HAVANA CDS 92084819 92084940 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 3; exon_id "ENSE00001727716.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1369 chr7 HAVANA exon 92085495 92085686 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 4; exon_id "ENSE00001610507.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1370 chr7 HAVANA CDS 92085495 92085686 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 4; exon_id "ENSE00001610507.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1371 chr7 HAVANA exon 92086228 92086416 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 5; exon_id "ENSE00000918935.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1372 chr7 HAVANA CDS 92086228 92086416 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 5; exon_id "ENSE00000918935.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1373 chr7 HAVANA exon 92089385 92090641 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 6; exon_id "ENSE00001745336.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1374 chr7 HAVANA CDS 92089385 92089690 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 6; exon_id "ENSE00001745336.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1375 chr7 HAVANA stop_codon 92089691 92089693 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 6; exon_id "ENSE00001745336.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1376 chr7 HAVANA UTR 92089691 92090641 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000435423.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-005"; exon_number 6; exon_id "ENSE00001745336.1"; level 2; protein_id "ENSP00000406937.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258935.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1377 chr7 HAVANA transcript 92091989 92110668 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1378 chr7 HAVANA exon 92091989 92093316 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 1; exon_id "ENSE00001887219.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1379 chr7 HAVANA exon 92095023 92095173 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 2; exon_id "ENSE00003513341.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1380 chr7 HAVANA exon 92096689 92097357 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 3; exon_id "ENSE00003642635.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1381 chr7 HAVANA exon 92097586 92097794 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 4; exon_id "ENSE00003691106.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1382 chr7 HAVANA exon 92098109 92098214 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 5; exon_id "ENSE00003626584.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1383 chr7 HAVANA exon 92099687 92099869 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 6; exon_id "ENSE00003517288.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1384 chr7 HAVANA exon 92100856 92101056 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 7; exon_id "ENSE00003530763.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1385 chr7 HAVANA exon 92102594 92102826 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 8; exon_id "ENSE00003494033.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1386 chr7 HAVANA exon 92105678 92105763 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 9; exon_id "ENSE00003544612.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1387 chr7 HAVANA exon 92107293 92107422 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 10; exon_id "ENSE00003625968.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1388 chr7 HAVANA exon 92108494 92108633 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 11; exon_id "ENSE00003485255.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1389 chr7 HAVANA exon 92110122 92110668 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487258.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-007"; exon_number 12; exon_id "ENSE00001882644.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258937.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1390 chr7 HAVANA transcript 92097160 92100042 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487692.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-012"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342892.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1391 chr7 HAVANA exon 92097160 92097357 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487692.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-012"; exon_number 1; exon_id "ENSE00001955041.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342892.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1392 chr7 HAVANA exon 92097586 92097794 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487692.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-012"; exon_number 2; exon_id "ENSE00003691106.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342892.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1393 chr7 HAVANA exon 92098109 92098214 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487692.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-012"; exon_number 3; exon_id "ENSE00003626584.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342892.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1394 chr7 HAVANA exon 92099687 92100042 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000487692.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-012"; exon_number 4; exon_id "ENSE00001893305.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342892.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1395 chr7 HAVANA transcript 92098154 92107512 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000463118.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-013"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342893.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1396 chr7 HAVANA exon 92098154 92098214 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000463118.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-013"; exon_number 1; exon_id "ENSE00001956879.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342893.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1397 chr7 HAVANA exon 92099687 92099869 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000463118.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-013"; exon_number 2; exon_id "ENSE00003517288.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342893.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1398 chr7 HAVANA exon 92100856 92101056 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000463118.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-013"; exon_number 3; exon_id "ENSE00003530763.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342893.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1399 chr7 HAVANA exon 92102687 92102826 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000463118.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-013"; exon_number 4; exon_id "ENSE00001821986.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342893.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1400 chr7 HAVANA exon 92105678 92105763 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000463118.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-013"; exon_number 5; exon_id "ENSE00003544612.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342893.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1401 chr7 HAVANA exon 92107293 92107512 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000463118.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-013"; exon_number 6; exon_id "ENSE00001875718.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000342893.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1402 chr7 HAVANA transcript 92102589 92110467 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000486313.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AKAP9-010"; level 1; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258940.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1403 chr7 HAVANA exon 92102589 92102826 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000486313.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AKAP9-010"; exon_number 1; exon_id "ENSE00001821067.1"; level 1; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258940.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1404 chr7 HAVANA exon 92110122 92110467 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000486313.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "AKAP9-010"; exon_number 2; exon_id "ENSE00001907863.1"; level 1; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258940.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1405 chr7 HAVANA transcript 92105677 92107929 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493976.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-009"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258939.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1406 chr7 HAVANA exon 92105677 92105763 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493976.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-009"; exon_number 1; exon_id "ENSE00001905362.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258939.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1407 chr7 HAVANA exon 92107293 92107929 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000493976.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "AKAP9-009"; exon_number 2; exon_id "ENSE00001837846.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000131127.4"; havana_transcript "OTTHUMT00000258939.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1408 chr7 ENSEMBL transcript 91941100 92090621 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1409 chr7 ENSEMBL exon 91941100 91941147 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 1; exon_id "ENSE00003735067.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1410 chr7 ENSEMBL CDS 91941100 91941147 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 1; exon_id "ENSE00003735067.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1411 chr7 ENSEMBL start_codon 91941100 91941102 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 1; exon_id "ENSE00003735067.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1412 chr7 ENSEMBL exon 91973711 91973968 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 2; exon_id "ENSE00003682193.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1413 chr7 ENSEMBL CDS 91973711 91973968 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 2; exon_id "ENSE00003682193.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1414 chr7 ENSEMBL exon 91980289 91980333 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 3; exon_id "ENSE00003617904.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1415 chr7 ENSEMBL CDS 91980289 91980333 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 3; exon_id "ENSE00003617904.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1416 chr7 ENSEMBL exon 91992158 91992211 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 4; exon_id "ENSE00003584199.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1417 chr7 ENSEMBL CDS 91992158 91992211 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 4; exon_id "ENSE00003584199.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1418 chr7 ENSEMBL exon 91992885 91993055 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 5; exon_id "ENSE00003575362.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1419 chr7 ENSEMBL CDS 91992885 91993055 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 5; exon_id "ENSE00003575362.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1420 chr7 ENSEMBL exon 91994621 91994776 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 6; exon_id "ENSE00003515378.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1421 chr7 ENSEMBL CDS 91994621 91994776 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 6; exon_id "ENSE00003515378.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1422 chr7 ENSEMBL exon 91995603 91995800 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 7; exon_id "ENSE00003462858.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1423 chr7 ENSEMBL CDS 91995603 91995800 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 7; exon_id "ENSE00003462858.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1424 chr7 ENSEMBL exon 92000848 92003235 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 8; exon_id "ENSE00003484877.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1425 chr7 ENSEMBL CDS 92000848 92003235 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 8; exon_id "ENSE00003484877.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1426 chr7 ENSEMBL exon 92012429 92012642 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 9; exon_id "ENSE00003610052.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1427 chr7 ENSEMBL CDS 92012429 92012642 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 9; exon_id "ENSE00003610052.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1428 chr7 ENSEMBL exon 92014249 92014328 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 10; exon_id "ENSE00003565503.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1429 chr7 ENSEMBL CDS 92014249 92014328 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 10; exon_id "ENSE00003565503.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1430 chr7 ENSEMBL exon 92016129 92016267 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 11; exon_id "ENSE00003542008.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1431 chr7 ENSEMBL CDS 92016129 92016267 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 11; exon_id "ENSE00003542008.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1432 chr7 ENSEMBL exon 92017017 92017102 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 12; exon_id "ENSE00003529688.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1433 chr7 ENSEMBL CDS 92017017 92017102 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 12; exon_id "ENSE00003529688.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1434 chr7 ENSEMBL exon 92022238 92022352 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 13; exon_id "ENSE00003563282.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1435 chr7 ENSEMBL CDS 92022238 92022352 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 13; exon_id "ENSE00003563282.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1436 chr7 ENSEMBL exon 92022814 92023009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 14; exon_id "ENSE00003631847.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1437 chr7 ENSEMBL CDS 92022814 92023009 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 14; exon_id "ENSE00003631847.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1438 chr7 ENSEMBL exon 92029895 92029991 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 15; exon_id "ENSE00003518175.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1439 chr7 ENSEMBL CDS 92029895 92029991 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 15; exon_id "ENSE00003518175.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1440 chr7 ENSEMBL exon 92031512 92031604 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 16; exon_id "ENSE00003550230.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1441 chr7 ENSEMBL CDS 92031512 92031604 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 16; exon_id "ENSE00003550230.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1442 chr7 ENSEMBL exon 92038419 92038772 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 17; exon_id "ENSE00003575995.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1443 chr7 ENSEMBL CDS 92038419 92038772 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 17; exon_id "ENSE00003575995.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1444 chr7 ENSEMBL exon 92040674 92040898 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 18; exon_id "ENSE00001031186.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1445 chr7 ENSEMBL CDS 92040674 92040898 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 18; exon_id "ENSE00001031186.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1446 chr7 ENSEMBL exon 92042668 92042771 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 19; exon_id "ENSE00000918951.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1447 chr7 ENSEMBL CDS 92042668 92042771 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 19; exon_id "ENSE00000918951.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1448 chr7 ENSEMBL exon 92045008 92045213 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 20; exon_id "ENSE00000918950.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1449 chr7 ENSEMBL CDS 92045008 92045213 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 20; exon_id "ENSE00000918950.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1450 chr7 ENSEMBL exon 92052726 92052958 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 21; exon_id "ENSE00000918949.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1451 chr7 ENSEMBL CDS 92052726 92052958 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 21; exon_id "ENSE00000918949.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1452 chr7 ENSEMBL exon 92061260 92061422 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 22; exon_id "ENSE00003563337.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1453 chr7 ENSEMBL CDS 92061260 92061422 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 22; exon_id "ENSE00003563337.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1454 chr7 ENSEMBL exon 92062274 92062486 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 23; exon_id "ENSE00003637094.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1455 chr7 ENSEMBL CDS 92062274 92062486 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 23; exon_id "ENSE00003637094.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1456 chr7 ENSEMBL exon 92065231 92065463 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 24; exon_id "ENSE00002707317.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1457 chr7 ENSEMBL CDS 92065231 92065463 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 24; exon_id "ENSE00002707317.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1458 chr7 ENSEMBL exon 92066427 92066546 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 25; exon_id "ENSE00002523196.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1459 chr7 ENSEMBL CDS 92066427 92066546 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 25; exon_id "ENSE00002523196.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1460 chr7 ENSEMBL exon 92070030 92070206 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 26; exon_id "ENSE00002440884.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1461 chr7 ENSEMBL CDS 92070030 92070206 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 26; exon_id "ENSE00002440884.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1462 chr7 ENSEMBL exon 92070905 92071009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 27; exon_id "ENSE00002504189.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1463 chr7 ENSEMBL CDS 92070905 92071009 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 27; exon_id "ENSE00002504189.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1464 chr7 ENSEMBL exon 92076855 92077007 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 28; exon_id "ENSE00002432222.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1465 chr7 ENSEMBL CDS 92076855 92077007 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 28; exon_id "ENSE00002432222.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1466 chr7 ENSEMBL exon 92077696 92077875 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 29; exon_id "ENSE00002469294.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1467 chr7 ENSEMBL CDS 92077696 92077875 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 29; exon_id "ENSE00002469294.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1468 chr7 ENSEMBL exon 92079079 92080152 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 30; exon_id "ENSE00000918940.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1469 chr7 ENSEMBL CDS 92079079 92080152 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 30; exon_id "ENSE00000918940.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1470 chr7 ENSEMBL exon 92082522 92082662 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 31; exon_id "ENSE00001747828.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1471 chr7 ENSEMBL CDS 92082522 92082662 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 31; exon_id "ENSE00001747828.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1472 chr7 ENSEMBL exon 92083170 92083655 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 32; exon_id "ENSE00001765764.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1473 chr7 ENSEMBL CDS 92083170 92083655 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 32; exon_id "ENSE00001765764.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1474 chr7 ENSEMBL exon 92084640 92084703 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 33; exon_id "ENSE00001615779.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1475 chr7 ENSEMBL CDS 92084640 92084703 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 33; exon_id "ENSE00001615779.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1476 chr7 ENSEMBL exon 92084819 92084940 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 34; exon_id "ENSE00001727716.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1477 chr7 ENSEMBL CDS 92084819 92084940 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 34; exon_id "ENSE00001727716.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1478 chr7 ENSEMBL exon 92085495 92085686 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 35; exon_id "ENSE00001610507.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1479 chr7 ENSEMBL CDS 92085495 92085686 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 35; exon_id "ENSE00001610507.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1480 chr7 ENSEMBL exon 92086228 92086416 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 36; exon_id "ENSE00000918935.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1481 chr7 ENSEMBL CDS 92086228 92086416 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 36; exon_id "ENSE00000918935.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1482 chr7 ENSEMBL exon 92089385 92090621 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 37; exon_id "ENSE00003735783.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1483 chr7 ENSEMBL CDS 92089385 92089690 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 37; exon_id "ENSE00003735783.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1484 chr7 ENSEMBL stop_codon 92089691 92089693 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 37; exon_id "ENSE00003735783.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1485 chr7 ENSEMBL UTR 92089691 92090621 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000358100.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-201"; exon_number 37; exon_id "ENSE00003735783.1"; level 3; protein_id "ENSP00000350813.3"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1486 chr7 ENSEMBL transcript 91941100 92110673 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1487 chr7 ENSEMBL exon 91941100 91941162 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 1; exon_id "ENSE00003752062.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1488 chr7 ENSEMBL CDS 91941100 91941162 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 1; exon_id "ENSE00003752062.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1489 chr7 ENSEMBL start_codon 91941100 91941102 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 1; exon_id "ENSE00003752062.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1490 chr7 ENSEMBL exon 91973690 91973707 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 2; exon_id "ENSE00003753622.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1491 chr7 ENSEMBL CDS 91973690 91973707 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 2; exon_id "ENSE00003753622.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1492 chr7 ENSEMBL exon 91973711 91973968 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 3; exon_id "ENSE00003682193.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1493 chr7 ENSEMBL CDS 91973711 91973968 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 3; exon_id "ENSE00003682193.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1494 chr7 ENSEMBL exon 91980289 91980333 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 4; exon_id "ENSE00003617904.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1495 chr7 ENSEMBL CDS 91980289 91980333 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 4; exon_id "ENSE00003617904.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1496 chr7 ENSEMBL exon 91992158 91992211 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 5; exon_id "ENSE00003584199.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1497 chr7 ENSEMBL CDS 91992158 91992211 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 5; exon_id "ENSE00003584199.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1498 chr7 ENSEMBL exon 91992885 91993055 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 6; exon_id "ENSE00003575362.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1499 chr7 ENSEMBL CDS 91992885 91993055 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 6; exon_id "ENSE00003575362.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1500 chr7 ENSEMBL exon 91994621 91994776 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 7; exon_id "ENSE00003515378.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1501 chr7 ENSEMBL CDS 91994621 91994776 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 7; exon_id "ENSE00003515378.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1502 chr7 ENSEMBL exon 91995603 91995800 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 8; exon_id "ENSE00003462858.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1503 chr7 ENSEMBL CDS 91995603 91995800 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 8; exon_id "ENSE00003462858.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1504 chr7 ENSEMBL exon 92000848 92003235 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 9; exon_id "ENSE00003484877.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1505 chr7 ENSEMBL CDS 92000848 92003235 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 9; exon_id "ENSE00003484877.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1506 chr7 ENSEMBL exon 92012429 92012642 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 10; exon_id "ENSE00003610052.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1507 chr7 ENSEMBL CDS 92012429 92012642 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 10; exon_id "ENSE00003610052.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1508 chr7 ENSEMBL exon 92014249 92014328 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 11; exon_id "ENSE00003565503.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1509 chr7 ENSEMBL CDS 92014249 92014328 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 11; exon_id "ENSE00003565503.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1510 chr7 ENSEMBL exon 92016129 92016267 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 12; exon_id "ENSE00003542008.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1511 chr7 ENSEMBL CDS 92016129 92016267 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 12; exon_id "ENSE00003542008.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1512 chr7 ENSEMBL exon 92017017 92017102 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 13; exon_id "ENSE00003529688.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1513 chr7 ENSEMBL CDS 92017017 92017102 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 13; exon_id "ENSE00003529688.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1514 chr7 ENSEMBL exon 92022238 92022352 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 14; exon_id "ENSE00003563282.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1515 chr7 ENSEMBL CDS 92022238 92022352 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 14; exon_id "ENSE00003563282.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1516 chr7 ENSEMBL exon 92022814 92023009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 15; exon_id "ENSE00003631847.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1517 chr7 ENSEMBL CDS 92022814 92023009 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 15; exon_id "ENSE00003631847.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1518 chr7 ENSEMBL exon 92029895 92029991 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 16; exon_id "ENSE00003518175.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1519 chr7 ENSEMBL CDS 92029895 92029991 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 16; exon_id "ENSE00003518175.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1520 chr7 ENSEMBL exon 92031512 92031604 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 17; exon_id "ENSE00003550230.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1521 chr7 ENSEMBL CDS 92031512 92031604 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 17; exon_id "ENSE00003550230.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1522 chr7 ENSEMBL exon 92038419 92038772 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 18; exon_id "ENSE00003575995.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1523 chr7 ENSEMBL CDS 92038419 92038772 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 18; exon_id "ENSE00003575995.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1524 chr7 ENSEMBL exon 92040674 92040898 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 19; exon_id "ENSE00001031186.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1525 chr7 ENSEMBL CDS 92040674 92040898 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 19; exon_id "ENSE00001031186.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1526 chr7 ENSEMBL exon 92042046 92042186 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 20; exon_id "ENSE00000918952.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1527 chr7 ENSEMBL CDS 92042046 92042186 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 20; exon_id "ENSE00000918952.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1528 chr7 ENSEMBL exon 92042668 92042771 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 21; exon_id "ENSE00000918951.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1529 chr7 ENSEMBL CDS 92042668 92042771 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 21; exon_id "ENSE00000918951.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1530 chr7 ENSEMBL exon 92045008 92045213 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 22; exon_id "ENSE00000918950.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1531 chr7 ENSEMBL CDS 92045008 92045213 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 22; exon_id "ENSE00000918950.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1532 chr7 ENSEMBL exon 92052726 92052958 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 23; exon_id "ENSE00000918949.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1533 chr7 ENSEMBL CDS 92052726 92052958 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 23; exon_id "ENSE00000918949.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1534 chr7 ENSEMBL exon 92061260 92061422 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 24; exon_id "ENSE00003563337.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1535 chr7 ENSEMBL CDS 92061260 92061422 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 24; exon_id "ENSE00003563337.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1536 chr7 ENSEMBL exon 92062274 92062486 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 25; exon_id "ENSE00003637094.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1537 chr7 ENSEMBL CDS 92062274 92062486 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 25; exon_id "ENSE00003637094.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1538 chr7 ENSEMBL exon 92065231 92065463 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 26; exon_id "ENSE00002707317.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1539 chr7 ENSEMBL CDS 92065231 92065463 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 26; exon_id "ENSE00002707317.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1540 chr7 ENSEMBL exon 92066427 92066546 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 27; exon_id "ENSE00002523196.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1541 chr7 ENSEMBL CDS 92066427 92066546 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 27; exon_id "ENSE00002523196.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1542 chr7 ENSEMBL exon 92070030 92070206 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 28; exon_id "ENSE00002440884.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1543 chr7 ENSEMBL CDS 92070030 92070206 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 28; exon_id "ENSE00002440884.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1544 chr7 ENSEMBL exon 92070905 92071009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 29; exon_id "ENSE00002504189.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1545 chr7 ENSEMBL CDS 92070905 92071009 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 29; exon_id "ENSE00002504189.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1546 chr7 ENSEMBL exon 92076855 92077007 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 30; exon_id "ENSE00002432222.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1547 chr7 ENSEMBL CDS 92076855 92077007 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 30; exon_id "ENSE00002432222.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1548 chr7 ENSEMBL exon 92077696 92077875 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 31; exon_id "ENSE00002469294.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1549 chr7 ENSEMBL CDS 92077696 92077875 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 31; exon_id "ENSE00002469294.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1550 chr7 ENSEMBL exon 92079079 92080152 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 32; exon_id "ENSE00000918940.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1551 chr7 ENSEMBL CDS 92079079 92080152 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 32; exon_id "ENSE00000918940.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1552 chr7 ENSEMBL exon 92082522 92082662 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 33; exon_id "ENSE00001747828.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1553 chr7 ENSEMBL CDS 92082522 92082662 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 33; exon_id "ENSE00001747828.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1554 chr7 ENSEMBL exon 92083170 92083695 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 34; exon_id "ENSE00000918938.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1555 chr7 ENSEMBL CDS 92083170 92083695 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 34; exon_id "ENSE00000918938.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1556 chr7 ENSEMBL exon 92084819 92084940 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 35; exon_id "ENSE00001727716.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1557 chr7 ENSEMBL CDS 92084819 92084940 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 35; exon_id "ENSE00001727716.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1558 chr7 ENSEMBL exon 92085495 92085686 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 36; exon_id "ENSE00001610507.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1559 chr7 ENSEMBL CDS 92085495 92085686 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 36; exon_id "ENSE00001610507.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1560 chr7 ENSEMBL exon 92086228 92086416 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 37; exon_id "ENSE00000918935.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1561 chr7 ENSEMBL CDS 92086228 92086416 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 37; exon_id "ENSE00000918935.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1562 chr7 ENSEMBL exon 92089385 92089529 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 38; exon_id "ENSE00000434664.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1563 chr7 ENSEMBL CDS 92089385 92089529 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 38; exon_id "ENSE00000434664.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1564 chr7 ENSEMBL exon 92093097 92093316 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 39; exon_id "ENSE00000434665.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1565 chr7 ENSEMBL CDS 92093097 92093316 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 39; exon_id "ENSE00000434665.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1566 chr7 ENSEMBL exon 92095023 92095173 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 40; exon_id "ENSE00003490760.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1567 chr7 ENSEMBL CDS 92095023 92095173 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 40; exon_id "ENSE00003490760.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1568 chr7 ENSEMBL exon 92096689 92097357 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 41; exon_id "ENSE00003522563.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1569 chr7 ENSEMBL CDS 92096689 92097357 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 41; exon_id "ENSE00003522563.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1570 chr7 ENSEMBL exon 92097586 92097794 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 42; exon_id "ENSE00003464483.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1571 chr7 ENSEMBL CDS 92097586 92097794 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 42; exon_id "ENSE00003464483.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1572 chr7 ENSEMBL exon 92098109 92098214 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 43; exon_id "ENSE00003608380.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1573 chr7 ENSEMBL CDS 92098109 92098214 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 43; exon_id "ENSE00003608380.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1574 chr7 ENSEMBL exon 92099687 92099869 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 44; exon_id "ENSE00003662552.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1575 chr7 ENSEMBL CDS 92099687 92099869 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 44; exon_id "ENSE00003662552.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1576 chr7 ENSEMBL exon 92100856 92101056 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 45; exon_id "ENSE00003596992.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1577 chr7 ENSEMBL CDS 92100856 92101056 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 45; exon_id "ENSE00003596992.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1578 chr7 ENSEMBL exon 92102594 92102826 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 46; exon_id "ENSE00003476965.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1579 chr7 ENSEMBL CDS 92102594 92102826 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 46; exon_id "ENSE00003476965.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1580 chr7 ENSEMBL exon 92105678 92105763 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 47; exon_id "ENSE00003671590.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1581 chr7 ENSEMBL CDS 92105678 92105763 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 47; exon_id "ENSE00003671590.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1582 chr7 ENSEMBL exon 92107293 92107422 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 48; exon_id "ENSE00003561325.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1583 chr7 ENSEMBL CDS 92107293 92107422 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 48; exon_id "ENSE00003561325.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1584 chr7 ENSEMBL exon 92108494 92108633 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 49; exon_id "ENSE00003666256.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1585 chr7 ENSEMBL CDS 92108494 92108633 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 49; exon_id "ENSE00003666256.1"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1586 chr7 ENSEMBL exon 92110122 92110673 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 50; exon_id "ENSE00001518744.2"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1587 chr7 ENSEMBL CDS 92110122 92110156 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 50; exon_id "ENSE00001518744.2"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1588 chr7 ENSEMBL stop_codon 92110157 92110159 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 50; exon_id "ENSE00001518744.2"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1589 chr7 ENSEMBL UTR 92110157 92110673 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000359028.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-202"; exon_number 50; exon_id "ENSE00001518744.2"; level 3; protein_id "ENSP00000351922.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1590 chr7 ENSEMBL transcript 91940916 92041781 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1591 chr7 ENSEMBL exon 91940916 91941157 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 1; exon_id "ENSE00001518835.4"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1592 chr7 ENSEMBL CDS 91941100 91941157 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 1; exon_id "ENSE00001518835.4"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1593 chr7 ENSEMBL start_codon 91941100 91941102 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 1; exon_id "ENSE00001518835.4"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1594 chr7 ENSEMBL exon 91973692 91973705 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 2; exon_id "ENSE00003722600.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1595 chr7 ENSEMBL CDS 91973692 91973705 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 2; exon_id "ENSE00003722600.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1596 chr7 ENSEMBL exon 91973711 91973968 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 3; exon_id "ENSE00003682193.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1597 chr7 ENSEMBL CDS 91973711 91973968 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 3; exon_id "ENSE00003682193.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1598 chr7 ENSEMBL exon 91980289 91980333 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 4; exon_id "ENSE00003617904.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1599 chr7 ENSEMBL CDS 91980289 91980333 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 4; exon_id "ENSE00003617904.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1600 chr7 ENSEMBL exon 91992158 91992211 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 5; exon_id "ENSE00003584199.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1601 chr7 ENSEMBL CDS 91992158 91992211 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 5; exon_id "ENSE00003584199.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1602 chr7 ENSEMBL exon 91992885 91993055 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 6; exon_id "ENSE00003575362.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1603 chr7 ENSEMBL CDS 91992885 91993055 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 6; exon_id "ENSE00003575362.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1604 chr7 ENSEMBL exon 91994621 91994776 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 7; exon_id "ENSE00003515378.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1605 chr7 ENSEMBL CDS 91994621 91994776 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 7; exon_id "ENSE00003515378.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1606 chr7 ENSEMBL exon 91995603 91995800 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 8; exon_id "ENSE00003462858.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1607 chr7 ENSEMBL CDS 91995603 91995800 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 8; exon_id "ENSE00003462858.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1608 chr7 ENSEMBL exon 92000848 92003235 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 9; exon_id "ENSE00003484877.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1609 chr7 ENSEMBL CDS 92000848 92003235 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 9; exon_id "ENSE00003484877.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1610 chr7 ENSEMBL exon 92012429 92012642 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 10; exon_id "ENSE00003610052.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1611 chr7 ENSEMBL CDS 92012429 92012642 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 10; exon_id "ENSE00003610052.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1612 chr7 ENSEMBL exon 92014249 92014328 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 11; exon_id "ENSE00003565503.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1613 chr7 ENSEMBL CDS 92014249 92014328 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 11; exon_id "ENSE00003565503.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1614 chr7 ENSEMBL exon 92016129 92016267 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 12; exon_id "ENSE00003542008.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1615 chr7 ENSEMBL CDS 92016129 92016267 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 12; exon_id "ENSE00003542008.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1616 chr7 ENSEMBL exon 92017017 92017102 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 13; exon_id "ENSE00003529688.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1617 chr7 ENSEMBL CDS 92017017 92017102 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 13; exon_id "ENSE00003529688.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1618 chr7 ENSEMBL exon 92022238 92022352 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 14; exon_id "ENSE00003563282.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1619 chr7 ENSEMBL CDS 92022238 92022352 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 14; exon_id "ENSE00003563282.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1620 chr7 ENSEMBL exon 92022814 92023009 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 15; exon_id "ENSE00003631847.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1621 chr7 ENSEMBL CDS 92022814 92023009 . + 2 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 15; exon_id "ENSE00003631847.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1622 chr7 ENSEMBL exon 92029895 92029991 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 16; exon_id "ENSE00003518175.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1623 chr7 ENSEMBL CDS 92029895 92029991 . + 1 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 16; exon_id "ENSE00003518175.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1624 chr7 ENSEMBL exon 92031512 92031604 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 17; exon_id "ENSE00003550230.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1625 chr7 ENSEMBL CDS 92031512 92031604 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 17; exon_id "ENSE00003550230.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1626 chr7 ENSEMBL exon 92038419 92038772 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 18; exon_id "ENSE00003575995.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1627 chr7 ENSEMBL CDS 92038419 92038772 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 18; exon_id "ENSE00003575995.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1628 chr7 ENSEMBL exon 92040674 92040856 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 19; exon_id "ENSE00003724515.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1629 chr7 ENSEMBL CDS 92040674 92040856 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 19; exon_id "ENSE00003724515.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1630 chr7 ENSEMBL exon 92040859 92041781 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 20; exon_id "ENSE00003741582.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1631 chr7 ENSEMBL CDS 92040859 92040870 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 20; exon_id "ENSE00003741582.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1632 chr7 ENSEMBL stop_codon 92040871 92040873 . + 0 gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 20; exon_id "ENSE00003741582.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1633 chr7 ENSEMBL UTR 91940916 91941099 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 1; exon_id "ENSE00001518835.4"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1634 chr7 ENSEMBL UTR 92040871 92041781 . + . gene_id "ENSG00000127914.16"; transcript_id "ENST00000619023.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "AKAP9"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "AKAP9-203"; exon_number 20; exon_id "ENSE00003741582.1"; level 3; protein_id "ENSP00000480807.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000131127.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1635 chr21 HAVANA transcript 41464551 41508159 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1636 chr21 HAVANA exon 41508081 41508159 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 1; exon_id "ENSE00001881208.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1637 chr21 HAVANA exon 41498119 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1638 chr21 HAVANA CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1639 chr21 HAVANA start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1640 chr21 HAVANA exon 41494356 41494578 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 3; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1641 chr21 HAVANA CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 3; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1642 chr21 HAVANA exon 41489507 41489593 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 4; exon_id "ENSE00003500399.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1643 chr21 HAVANA CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 4; exon_id "ENSE00003500399.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1644 chr21 HAVANA exon 41488394 41488513 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 5; exon_id "ENSE00001308618.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1645 chr21 HAVANA CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 5; exon_id "ENSE00001308618.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1646 chr21 HAVANA exon 41480476 41480602 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 6; exon_id "ENSE00001328752.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1647 chr21 HAVANA CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 6; exon_id "ENSE00001328752.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1648 chr21 HAVANA exon 41479172 41479282 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 7; exon_id "ENSE00001296879.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1649 chr21 HAVANA CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 7; exon_id "ENSE00001296879.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1650 chr21 HAVANA exon 41476577 41476620 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 8; exon_id "ENSE00001319118.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1651 chr21 HAVANA CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 8; exon_id "ENSE00001319118.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1652 chr21 HAVANA exon 41473325 41473496 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 9; exon_id "ENSE00001291248.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1653 chr21 HAVANA CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 9; exon_id "ENSE00001291248.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1654 chr21 HAVANA exon 41471806 41471981 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 10; exon_id "ENSE00001310536.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1655 chr21 HAVANA CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 10; exon_id "ENSE00001310536.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1656 chr21 HAVANA exon 41470648 41470743 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 11; exon_id "ENSE00001309041.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1657 chr21 HAVANA CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 11; exon_id "ENSE00001309041.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1658 chr21 HAVANA exon 41468396 41468538 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 12; exon_id "ENSE00001324661.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1659 chr21 HAVANA CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 12; exon_id "ENSE00001324661.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1660 chr21 HAVANA exon 41467734 41467886 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 13; exon_id "ENSE00003786558.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1661 chr21 HAVANA CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 13; exon_id "ENSE00003786558.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1662 chr21 HAVANA exon 41464551 41466153 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 14; exon_id "ENSE00001919654.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1663 chr21 HAVANA CDS 41466145 41466153 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 14; exon_id "ENSE00001919654.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1664 chr21 HAVANA stop_codon 41466142 41466144 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 14; exon_id "ENSE00001919654.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1665 chr21 HAVANA UTR 41508081 41508159 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 1; exon_id "ENSE00001881208.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1666 chr21 HAVANA UTR 41498134 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1667 chr21 HAVANA UTR 41464551 41466144 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000332149.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-001"; exon_number 14; exon_id "ENSE00001919654.1"; level 2; protein_id "ENSP00000330330.5"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195189.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1668 chr21 HAVANA transcript 41465890 41468102 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000488556.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-006"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195194.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1669 chr21 HAVANA exon 41467734 41468102 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000488556.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-006"; exon_number 1; exon_id "ENSE00001893309.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195194.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1670 chr21 HAVANA exon 41465890 41466153 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000488556.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-006"; exon_number 2; exon_id "ENSE00001872432.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195194.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1671 chr21 HAVANA transcript 41466009 41507982 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1672 chr21 HAVANA exon 41507950 41507982 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 1; exon_id "ENSE00001710402.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1673 chr21 HAVANA exon 41498119 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1674 chr21 HAVANA CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1675 chr21 HAVANA start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1676 chr21 HAVANA exon 41494356 41494578 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 3; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1677 chr21 HAVANA CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 3; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1678 chr21 HAVANA exon 41489507 41489593 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 4; exon_id "ENSE00003500399.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1679 chr21 HAVANA CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 4; exon_id "ENSE00003500399.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1680 chr21 HAVANA exon 41488394 41488513 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 5; exon_id "ENSE00001308618.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1681 chr21 HAVANA CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 5; exon_id "ENSE00001308618.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1682 chr21 HAVANA exon 41480476 41480602 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 6; exon_id "ENSE00001328752.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1683 chr21 HAVANA CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 6; exon_id "ENSE00001328752.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1684 chr21 HAVANA exon 41479172 41479282 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 7; exon_id "ENSE00001296879.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1685 chr21 HAVANA CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 7; exon_id "ENSE00001296879.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1686 chr21 HAVANA exon 41476577 41476620 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 8; exon_id "ENSE00001319118.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1687 chr21 HAVANA CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 8; exon_id "ENSE00001319118.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1688 chr21 HAVANA exon 41473325 41473496 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 9; exon_id "ENSE00001291248.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1689 chr21 HAVANA CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 9; exon_id "ENSE00001291248.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1690 chr21 HAVANA exon 41471806 41471981 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 10; exon_id "ENSE00001310536.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1691 chr21 HAVANA CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 10; exon_id "ENSE00001310536.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1692 chr21 HAVANA exon 41470648 41470743 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 11; exon_id "ENSE00001309041.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1693 chr21 HAVANA CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 11; exon_id "ENSE00001309041.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1694 chr21 HAVANA exon 41468396 41468538 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 12; exon_id "ENSE00001324661.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1695 chr21 HAVANA CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 12; exon_id "ENSE00001324661.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1696 chr21 HAVANA exon 41467734 41467886 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 13; exon_id "ENSE00003786558.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1697 chr21 HAVANA CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 13; exon_id "ENSE00003786558.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1698 chr21 HAVANA exon 41466009 41466153 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 14; exon_id "ENSE00001651579.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1699 chr21 HAVANA CDS 41466145 41466153 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 14; exon_id "ENSE00001651579.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1700 chr21 HAVANA stop_codon 41466142 41466144 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 14; exon_id "ENSE00001651579.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1701 chr21 HAVANA UTR 41507950 41507982 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 1; exon_id "ENSE00001710402.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1702 chr21 HAVANA UTR 41498134 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1703 chr21 HAVANA UTR 41466009 41466144 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000458356.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-009"; exon_number 14; exon_id "ENSE00001651579.1"; level 2; protein_id "ENSP00000391216.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33564.1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1704 chr21 HAVANA transcript 41467734 41531116 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1705 chr21 HAVANA exon 41530985 41531116 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 1; exon_id "ENSE00001620762.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1706 chr21 HAVANA exon 41529973 41530218 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 2; exon_id "ENSE00001620678.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1707 chr21 HAVANA exon 41498119 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 3; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1708 chr21 HAVANA CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 3; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1709 chr21 HAVANA start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 3; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1710 chr21 HAVANA exon 41494356 41494578 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 4; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1711 chr21 HAVANA CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 4; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1712 chr21 HAVANA exon 41489507 41489593 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 5; exon_id "ENSE00003500399.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1713 chr21 HAVANA CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 5; exon_id "ENSE00003500399.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1714 chr21 HAVANA exon 41488394 41488513 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 6; exon_id "ENSE00001308618.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1715 chr21 HAVANA CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 6; exon_id "ENSE00001308618.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1716 chr21 HAVANA exon 41480476 41480602 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 7; exon_id "ENSE00001328752.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1717 chr21 HAVANA CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 7; exon_id "ENSE00001328752.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1718 chr21 HAVANA exon 41479172 41479282 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 8; exon_id "ENSE00001296879.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1719 chr21 HAVANA CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 8; exon_id "ENSE00001296879.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1720 chr21 HAVANA exon 41476577 41476620 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 9; exon_id "ENSE00001319118.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1721 chr21 HAVANA CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 9; exon_id "ENSE00001319118.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1722 chr21 HAVANA exon 41473325 41473496 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 10; exon_id "ENSE00001291248.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1723 chr21 HAVANA CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 10; exon_id "ENSE00001291248.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1724 chr21 HAVANA exon 41471806 41471981 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 11; exon_id "ENSE00001310536.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1725 chr21 HAVANA CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 11; exon_id "ENSE00001310536.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1726 chr21 HAVANA exon 41470648 41470743 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 12; exon_id "ENSE00001309041.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1727 chr21 HAVANA CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 12; exon_id "ENSE00001309041.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1728 chr21 HAVANA exon 41468396 41468538 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 13; exon_id "ENSE00001324661.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1729 chr21 HAVANA CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 13; exon_id "ENSE00001324661.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1730 chr21 HAVANA exon 41467734 41467886 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 14; exon_id "ENSE00003786558.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1731 chr21 HAVANA CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 14; exon_id "ENSE00003786558.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1732 chr21 HAVANA UTR 41530985 41531116 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 1; exon_id "ENSE00001620762.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1733 chr21 HAVANA UTR 41529973 41530218 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 2; exon_id "ENSE00001620678.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1734 chr21 HAVANA UTR 41498134 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000454499.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-008"; exon_number 3; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000389006.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; tag "appris_alternative_1"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339861.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1735 chr21 HAVANA transcript 41467766 41468837 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000469395.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-005"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195193.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1736 chr21 HAVANA exon 41468396 41468837 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000469395.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-005"; exon_number 1; exon_id "ENSE00001909048.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195193.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1737 chr21 HAVANA exon 41467766 41467886 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000469395.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-005"; exon_number 2; exon_id "ENSE00001950249.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195193.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1738 chr21 HAVANA transcript 41473446 41508092 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1739 chr21 HAVANA exon 41508081 41508092 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 1; exon_id "ENSE00002442487.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1740 chr21 HAVANA exon 41498119 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1741 chr21 HAVANA CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1742 chr21 HAVANA start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1743 chr21 HAVANA exon 41494356 41494578 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 3; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1744 chr21 HAVANA CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 3; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1745 chr21 HAVANA exon 41489507 41489593 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 4; exon_id "ENSE00003500399.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1746 chr21 HAVANA CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 4; exon_id "ENSE00003500399.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1747 chr21 HAVANA exon 41480476 41480602 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 5; exon_id "ENSE00001328752.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1748 chr21 HAVANA CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 5; exon_id "ENSE00001328752.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1749 chr21 HAVANA exon 41479172 41479282 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 6; exon_id "ENSE00001296879.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1750 chr21 HAVANA CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 6; exon_id "ENSE00001296879.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1751 chr21 HAVANA exon 41476577 41476620 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 7; exon_id "ENSE00001319118.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1752 chr21 HAVANA CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 7; exon_id "ENSE00001319118.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1753 chr21 HAVANA exon 41473446 41473496 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 8; exon_id "ENSE00001665763.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1754 chr21 HAVANA CDS 41473446 41473496 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 8; exon_id "ENSE00001665763.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1755 chr21 HAVANA UTR 41508081 41508092 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 1; exon_id "ENSE00002442487.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1756 chr21 HAVANA UTR 41498134 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000424093.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-003"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000397846.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195191.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1757 chr21 HAVANA transcript 41486467 41508158 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000497881.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-002"; level 2; tag "non_canonical_TEC"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195190.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1758 chr21 HAVANA exon 41508081 41508158 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000497881.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-002"; exon_number 1; exon_id "ENSE00001296629.2"; level 2; tag "non_canonical_TEC"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195190.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1759 chr21 HAVANA exon 41498119 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000497881.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-002"; exon_number 2; exon_id "ENSE00003609166.1"; level 2; tag "non_canonical_TEC"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195190.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1760 chr21 HAVANA exon 41486467 41488025 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000497881.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-002"; exon_number 3; exon_id "ENSE00001846183.1"; level 2; tag "non_canonical_TEC"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195190.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1761 chr21 HAVANA transcript 41488489 41508114 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000463138.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-004"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195192.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1762 chr21 HAVANA exon 41508081 41508114 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000463138.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-004"; exon_number 1; exon_id "ENSE00001876229.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195192.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1763 chr21 HAVANA exon 41498119 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000463138.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-004"; exon_number 2; exon_id "ENSE00003609166.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195192.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1764 chr21 HAVANA exon 41489507 41489593 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000463138.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-004"; exon_number 3; exon_id "ENSE00003467838.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195192.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1765 chr21 HAVANA exon 41488489 41488513 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000463138.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "TMPRSS2-004"; exon_number 4; exon_id "ENSE00001843326.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000195192.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1766 chr21 HAVANA transcript 41494356 41506604 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1767 chr21 HAVANA exon 41506445 41506604 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; exon_number 1; exon_id "ENSE00001686361.1"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1768 chr21 HAVANA exon 41498119 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1769 chr21 HAVANA CDS 41498119 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1770 chr21 HAVANA start_codon 41498131 41498133 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1771 chr21 HAVANA exon 41494356 41494578 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; exon_number 3; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1772 chr21 HAVANA CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; exon_number 3; exon_id "ENSE00003788834.1"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1773 chr21 HAVANA UTR 41506445 41506604 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; exon_number 1; exon_id "ENSE00001686361.1"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1774 chr21 HAVANA UTR 41498134 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000455813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-010"; exon_number 2; exon_id "ENSE00003502036.1"; level 2; protein_id "ENSP00000391784.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339863.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1775 chr21 HAVANA transcript 41529789 41531098 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000489201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-011"; level 2; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1776 chr21 HAVANA exon 41530985 41531098 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000489201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-011"; exon_number 1; exon_id "ENSE00001838338.1"; level 2; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1777 chr21 HAVANA exon 41529789 41530218 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000489201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "TMPRSS2-011"; exon_number 2; exon_id "ENSE00001948395.1"; level 2; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000086762.6"; havana_transcript "OTTHUMT00000339864.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1778 chr21 ENSEMBL transcript 41464553 41508065 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1779 chr21 ENSEMBL exon 41507950 41508065 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 1; exon_id "ENSE00001894632.2"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1780 chr21 ENSEMBL CDS 41507950 41508004 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 1; exon_id "ENSE00001894632.2"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1781 chr21 ENSEMBL start_codon 41508002 41508004 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 1; exon_id "ENSE00001894632.2"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1782 chr21 ENSEMBL exon 41498119 41498189 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 2; exon_id "ENSE00003523611.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1783 chr21 ENSEMBL CDS 41498119 41498189 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 2; exon_id "ENSE00003523611.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1784 chr21 ENSEMBL exon 41494356 41494578 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 3; exon_id "ENSE00003788834.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1785 chr21 ENSEMBL CDS 41494356 41494578 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 3; exon_id "ENSE00003788834.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1786 chr21 ENSEMBL exon 41489507 41489593 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 4; exon_id "ENSE00003500399.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1787 chr21 ENSEMBL CDS 41489507 41489593 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 4; exon_id "ENSE00003500399.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1788 chr21 ENSEMBL exon 41488394 41488513 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 5; exon_id "ENSE00001308618.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1789 chr21 ENSEMBL CDS 41488394 41488513 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 5; exon_id "ENSE00001308618.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1790 chr21 ENSEMBL exon 41480476 41480602 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 6; exon_id "ENSE00001328752.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1791 chr21 ENSEMBL CDS 41480476 41480602 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 6; exon_id "ENSE00001328752.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1792 chr21 ENSEMBL exon 41479172 41479282 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 7; exon_id "ENSE00001296879.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1793 chr21 ENSEMBL CDS 41479172 41479282 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 7; exon_id "ENSE00001296879.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1794 chr21 ENSEMBL exon 41476577 41476620 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 8; exon_id "ENSE00001319118.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1795 chr21 ENSEMBL CDS 41476577 41476620 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 8; exon_id "ENSE00001319118.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1796 chr21 ENSEMBL exon 41473325 41473496 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 9; exon_id "ENSE00001291248.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1797 chr21 ENSEMBL CDS 41473325 41473496 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 9; exon_id "ENSE00001291248.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1798 chr21 ENSEMBL exon 41471806 41471981 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 10; exon_id "ENSE00001310536.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1799 chr21 ENSEMBL CDS 41471806 41471981 . - 1 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 10; exon_id "ENSE00001310536.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1800 chr21 ENSEMBL exon 41470648 41470743 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 11; exon_id "ENSE00001309041.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1801 chr21 ENSEMBL CDS 41470648 41470743 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 11; exon_id "ENSE00001309041.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1802 chr21 ENSEMBL exon 41468396 41468538 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 12; exon_id "ENSE00001324661.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1803 chr21 ENSEMBL CDS 41468396 41468538 . - 2 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 12; exon_id "ENSE00001324661.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1804 chr21 ENSEMBL exon 41467734 41467886 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 13; exon_id "ENSE00003786558.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1805 chr21 ENSEMBL CDS 41467734 41467886 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 13; exon_id "ENSE00003786558.1"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1806 chr21 ENSEMBL exon 41464553 41466153 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 14; exon_id "ENSE00001485252.2"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1807 chr21 ENSEMBL CDS 41466145 41466153 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 14; exon_id "ENSE00001485252.2"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1808 chr21 ENSEMBL stop_codon 41466142 41466144 . - 0 gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 14; exon_id "ENSE00001485252.2"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1809 chr21 ENSEMBL UTR 41508005 41508065 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 1; exon_id "ENSE00001894632.2"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1810 chr21 ENSEMBL UTR 41464553 41466144 . - . gene_id "ENSG00000184012.11"; transcript_id "ENST00000398585.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TMPRSS2"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TMPRSS2-201"; exon_number 14; exon_id "ENSE00001485252.2"; level 3; protein_id "ENSP00000381588.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS54486.1"; havana_gene "OTTHUMG00000086762.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1811 chr19 HAVANA transcript 15235519 15280451 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1812 chr19 HAVANA exon 15280264 15280451 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 1; exon_id "ENSE00001113198.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1813 chr19 HAVANA exon 15272815 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1814 chr19 HAVANA CDS 15272815 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1815 chr19 HAVANA start_codon 15273097 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1816 chr19 HAVANA exon 15268905 15269042 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1817 chr19 HAVANA CDS 15268905 15269042 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1818 chr19 HAVANA exon 15267416 15267551 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 4; exon_id "ENSE00003548258.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1819 chr19 HAVANA CDS 15267416 15267551 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 4; exon_id "ENSE00003548258.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1820 chr19 HAVANA exon 15265354 15265643 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 5; exon_id "ENSE00000689048.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1821 chr19 HAVANA CDS 15265354 15265643 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 5; exon_id "ENSE00000689048.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1822 chr19 HAVANA exon 15264404 15264766 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 6; exon_id "ENSE00000348853.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1823 chr19 HAVANA CDS 15264404 15264766 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 6; exon_id "ENSE00000348853.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1824 chr19 HAVANA exon 15263420 15263548 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 7; exon_id "ENSE00003680162.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1825 chr19 HAVANA CDS 15263420 15263548 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 7; exon_id "ENSE00003680162.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1826 chr19 HAVANA exon 15256964 15257173 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 8; exon_id "ENSE00003506585.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1827 chr19 HAVANA CDS 15256964 15257173 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 8; exon_id "ENSE00003506585.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1828 chr19 HAVANA exon 15256064 15256263 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 9; exon_id "ENSE00000689052.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1829 chr19 HAVANA CDS 15256064 15256263 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 9; exon_id "ENSE00000689052.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1830 chr19 HAVANA exon 15255297 15255592 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 10; exon_id "ENSE00000689053.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1831 chr19 HAVANA CDS 15255297 15255592 . - 1 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 10; exon_id "ENSE00000689053.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1832 chr19 HAVANA exon 15254152 15254262 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 11; exon_id "ENSE00001187704.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1833 chr19 HAVANA CDS 15254152 15254262 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 11; exon_id "ENSE00001187704.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1834 chr19 HAVANA exon 15244710 15244762 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 12; exon_id "ENSE00001113203.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1835 chr19 HAVANA CDS 15244710 15244762 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 12; exon_id "ENSE00001113203.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1836 chr19 HAVANA exon 15244231 15244600 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 13; exon_id "ENSE00001055985.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1837 chr19 HAVANA CDS 15244231 15244600 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 13; exon_id "ENSE00001055985.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1838 chr19 HAVANA exon 15242900 15243487 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 14; exon_id "ENSE00001055976.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1839 chr19 HAVANA CDS 15242900 15243487 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 14; exon_id "ENSE00001055976.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1840 chr19 HAVANA exon 15239910 15240022 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 15; exon_id "ENSE00001136676.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1841 chr19 HAVANA CDS 15239910 15240022 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 15; exon_id "ENSE00001136676.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1842 chr19 HAVANA exon 15239659 15239821 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 16; exon_id "ENSE00001113200.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1843 chr19 HAVANA CDS 15239659 15239821 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 16; exon_id "ENSE00001113200.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1844 chr19 HAVANA exon 15239392 15239522 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 17; exon_id "ENSE00001113199.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1845 chr19 HAVANA CDS 15239392 15239522 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 17; exon_id "ENSE00001113199.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1846 chr19 HAVANA exon 15239059 15239264 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 18; exon_id "ENSE00000951121.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1847 chr19 HAVANA CDS 15239059 15239264 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 18; exon_id "ENSE00000951121.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1848 chr19 HAVANA exon 15238743 15238980 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 19; exon_id "ENSE00000951122.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1849 chr19 HAVANA CDS 15238743 15238980 . - 1 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 19; exon_id "ENSE00000951122.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1850 chr19 HAVANA exon 15235519 15238445 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 20; exon_id "ENSE00001055981.5"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1851 chr19 HAVANA CDS 15238380 15238445 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 20; exon_id "ENSE00001055981.5"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1852 chr19 HAVANA stop_codon 15238377 15238379 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 20; exon_id "ENSE00001055981.5"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1853 chr19 HAVANA UTR 15280264 15280451 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 1; exon_id "ENSE00001113198.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1854 chr19 HAVANA UTR 15273100 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1855 chr19 HAVANA UTR 15235519 15238379 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000263377.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-001"; exon_number 20; exon_id "ENSE00001055981.5"; level 2; protein_id "ENSP00000263377.1"; tag "overlapping_uORF"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12328.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465800.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1856 chr19 HAVANA transcript 15244523 15246618 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594066.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-011"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465859.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1857 chr19 HAVANA exon 15246508 15246618 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594066.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-011"; exon_number 1; exon_id "ENSE00003009465.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465859.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1858 chr19 HAVANA exon 15244523 15244998 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594066.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-011"; exon_number 2; exon_id "ENSE00003164815.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465859.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1859 chr19 HAVANA transcript 15247047 15280451 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1860 chr19 HAVANA exon 15280264 15280451 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 1; exon_id "ENSE00001113198.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1861 chr19 HAVANA exon 15272815 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1862 chr19 HAVANA CDS 15272815 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1863 chr19 HAVANA start_codon 15273097 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1864 chr19 HAVANA exon 15268905 15269042 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1865 chr19 HAVANA CDS 15268905 15269042 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1866 chr19 HAVANA exon 15267416 15267551 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 4; exon_id "ENSE00003548258.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1867 chr19 HAVANA CDS 15267416 15267551 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 4; exon_id "ENSE00003548258.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1868 chr19 HAVANA exon 15265354 15265643 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 5; exon_id "ENSE00000689048.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1869 chr19 HAVANA CDS 15265354 15265643 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 5; exon_id "ENSE00000689048.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1870 chr19 HAVANA exon 15264404 15264766 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 6; exon_id "ENSE00000348853.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1871 chr19 HAVANA CDS 15264404 15264766 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 6; exon_id "ENSE00000348853.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1872 chr19 HAVANA exon 15263420 15263548 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 7; exon_id "ENSE00003680162.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1873 chr19 HAVANA CDS 15263420 15263548 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 7; exon_id "ENSE00003680162.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1874 chr19 HAVANA exon 15256964 15257173 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 8; exon_id "ENSE00003506585.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1875 chr19 HAVANA CDS 15256964 15257173 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 8; exon_id "ENSE00003506585.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1876 chr19 HAVANA exon 15256064 15256263 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 9; exon_id "ENSE00000689052.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1877 chr19 HAVANA CDS 15256064 15256263 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 9; exon_id "ENSE00000689052.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1878 chr19 HAVANA exon 15255297 15255592 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 10; exon_id "ENSE00000689053.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1879 chr19 HAVANA CDS 15255297 15255592 . - 1 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 10; exon_id "ENSE00000689053.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1880 chr19 HAVANA exon 15254152 15254262 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 11; exon_id "ENSE00001187704.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1881 chr19 HAVANA CDS 15254152 15254262 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 11; exon_id "ENSE00001187704.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1882 chr19 HAVANA exon 15247047 15249290 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 12; exon_id "ENSE00001693690.3"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1883 chr19 HAVANA CDS 15249283 15249290 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 12; exon_id "ENSE00001693690.3"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1884 chr19 HAVANA stop_codon 15249280 15249282 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 12; exon_id "ENSE00001693690.3"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1885 chr19 HAVANA UTR 15280264 15280451 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 1; exon_id "ENSE00001113198.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1886 chr19 HAVANA UTR 15273100 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1887 chr19 HAVANA UTR 15247047 15249282 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000371835.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-002"; exon_number 12; exon_id "ENSE00001693690.3"; level 2; protein_id "ENSP00000360901.3"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS46004.1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465801.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1888 chr19 HAVANA transcript 15252992 15332545 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1889 chr19 HAVANA exon 15332290 15332545 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 1; exon_id "ENSE00002204778.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1890 chr19 HAVANA exon 15272815 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1891 chr19 HAVANA CDS 15272815 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1892 chr19 HAVANA start_codon 15273097 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1893 chr19 HAVANA exon 15268905 15269042 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1894 chr19 HAVANA CDS 15268905 15269042 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1895 chr19 HAVANA exon 15267416 15267551 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 4; exon_id "ENSE00003548258.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1896 chr19 HAVANA CDS 15267416 15267551 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 4; exon_id "ENSE00003548258.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1897 chr19 HAVANA exon 15265354 15265643 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 5; exon_id "ENSE00000689048.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1898 chr19 HAVANA CDS 15265354 15265643 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 5; exon_id "ENSE00000689048.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1899 chr19 HAVANA exon 15264404 15264766 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 6; exon_id "ENSE00000348853.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1900 chr19 HAVANA CDS 15264404 15264766 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 6; exon_id "ENSE00000348853.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1901 chr19 HAVANA exon 15263420 15263548 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 7; exon_id "ENSE00003680162.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1902 chr19 HAVANA CDS 15263420 15263548 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 7; exon_id "ENSE00003680162.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1903 chr19 HAVANA exon 15256964 15257173 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 8; exon_id "ENSE00003506585.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1904 chr19 HAVANA CDS 15256964 15257173 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 8; exon_id "ENSE00003506585.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1905 chr19 HAVANA exon 15256064 15256263 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 9; exon_id "ENSE00000689052.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1906 chr19 HAVANA CDS 15256064 15256263 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 9; exon_id "ENSE00000689052.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1907 chr19 HAVANA exon 15255297 15255592 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 10; exon_id "ENSE00000689053.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1908 chr19 HAVANA CDS 15255297 15255592 . - 1 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 10; exon_id "ENSE00000689053.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1909 chr19 HAVANA exon 15254152 15254262 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 11; exon_id "ENSE00001187704.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1910 chr19 HAVANA CDS 15254152 15254262 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 11; exon_id "ENSE00001187704.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1911 chr19 HAVANA exon 15252992 15253783 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 12; exon_id "ENSE00001408591.4"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1912 chr19 HAVANA CDS 15253560 15253783 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 12; exon_id "ENSE00001408591.4"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1913 chr19 HAVANA stop_codon 15253557 15253559 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 12; exon_id "ENSE00001408591.4"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1914 chr19 HAVANA UTR 15332290 15332545 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 1; exon_id "ENSE00002204778.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1915 chr19 HAVANA UTR 15273100 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1916 chr19 HAVANA UTR 15252992 15253559 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000360016.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-003"; exon_number 12; exon_id "ENSE00001408591.4"; level 2; protein_id "ENSP00000353112.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465802.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1917 chr19 HAVANA transcript 15253751 15255366 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000595926.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-010"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1918 chr19 HAVANA exon 15255297 15255366 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000595926.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-010"; exon_number 1; exon_id "ENSE00003176538.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1919 chr19 HAVANA exon 15253751 15254262 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000595926.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-010"; exon_number 2; exon_id "ENSE00003110786.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465860.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1920 chr19 HAVANA transcript 15256099 15331906 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1921 chr19 HAVANA exon 15331836 15331906 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 1; exon_id "ENSE00003057820.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1922 chr19 HAVANA exon 15272815 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1923 chr19 HAVANA CDS 15272815 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1924 chr19 HAVANA start_codon 15273097 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1925 chr19 HAVANA exon 15268905 15269042 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1926 chr19 HAVANA CDS 15268905 15269042 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1927 chr19 HAVANA exon 15267416 15267551 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 4; exon_id "ENSE00003548258.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1928 chr19 HAVANA CDS 15267416 15267551 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 4; exon_id "ENSE00003548258.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1929 chr19 HAVANA exon 15265354 15265643 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 5; exon_id "ENSE00000689048.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1930 chr19 HAVANA CDS 15265354 15265643 . - 2 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 5; exon_id "ENSE00000689048.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1931 chr19 HAVANA exon 15264404 15264766 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 6; exon_id "ENSE00000348853.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1932 chr19 HAVANA CDS 15264404 15264766 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 6; exon_id "ENSE00000348853.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1933 chr19 HAVANA exon 15263420 15263548 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 7; exon_id "ENSE00003680162.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1934 chr19 HAVANA CDS 15263420 15263548 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 7; exon_id "ENSE00003680162.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1935 chr19 HAVANA exon 15256964 15257173 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 8; exon_id "ENSE00003506585.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1936 chr19 HAVANA CDS 15256964 15257173 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 8; exon_id "ENSE00003506585.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1937 chr19 HAVANA exon 15256099 15256263 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 9; exon_id "ENSE00003208936.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1938 chr19 HAVANA CDS 15256099 15256263 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 9; exon_id "ENSE00003208936.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1939 chr19 HAVANA UTR 15331836 15331906 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 1; exon_id "ENSE00003057820.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1940 chr19 HAVANA UTR 15273100 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594841.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-004"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000470481.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465803.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1941 chr19 HAVANA transcript 15256135 15264400 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000602230.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-007"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1942 chr19 HAVANA exon 15264118 15264400 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000602230.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-007"; exon_number 1; exon_id "ENSE00003084514.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1943 chr19 HAVANA exon 15263420 15263548 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000602230.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-007"; exon_number 2; exon_id "ENSE00003542307.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1944 chr19 HAVANA exon 15256964 15257173 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000602230.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-007"; exon_number 3; exon_id "ENSE00003584427.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1945 chr19 HAVANA exon 15256135 15256263 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000602230.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-007"; exon_number 4; exon_id "ENSE00003172925.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465861.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1946 chr19 HAVANA transcript 15256208 15257315 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594842.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-009"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1947 chr19 HAVANA exon 15256964 15257315 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594842.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-009"; exon_number 1; exon_id "ENSE00003043150.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1948 chr19 HAVANA exon 15256208 15256263 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000594842.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "BRD4-009"; exon_number 2; exon_id "ENSE00003126391.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465862.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1949 chr19 HAVANA transcript 15265627 15332443 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1950 chr19 HAVANA exon 15332290 15332443 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 1; exon_id "ENSE00003024679.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1951 chr19 HAVANA exon 15272815 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1952 chr19 HAVANA CDS 15272815 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1953 chr19 HAVANA start_codon 15273097 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1954 chr19 HAVANA exon 15268905 15269042 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1955 chr19 HAVANA CDS 15268905 15269042 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 3; exon_id "ENSE00003494168.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1956 chr19 HAVANA exon 15268154 15268281 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 4; exon_id "ENSE00003184464.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1957 chr19 HAVANA CDS 15268267 15268281 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 4; exon_id "ENSE00003184464.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1958 chr19 HAVANA stop_codon 15268264 15268266 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 4; exon_id "ENSE00003184464.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1959 chr19 HAVANA exon 15267416 15267551 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 5; exon_id "ENSE00003692350.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1960 chr19 HAVANA exon 15265627 15265643 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 6; exon_id "ENSE00003039195.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1961 chr19 HAVANA UTR 15332290 15332443 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 1; exon_id "ENSE00003024679.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1962 chr19 HAVANA UTR 15273100 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 2; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1963 chr19 HAVANA UTR 15268154 15268266 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 4; exon_id "ENSE00003184464.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1964 chr19 HAVANA UTR 15267416 15267551 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 5; exon_id "ENSE00003692350.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1965 chr19 HAVANA UTR 15265627 15265643 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000597315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "BRD4-005"; exon_number 6; exon_id "ENSE00003039195.1"; level 2; protein_id "ENSP00000470108.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465863.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1966 chr19 HAVANA transcript 15267514 15272981 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601071.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-006"; level 2; tag "NMD_likely_if_extended"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465864.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1967 chr19 HAVANA exon 15272815 15272981 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601071.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-006"; exon_number 1; exon_id "ENSE00003082483.1"; level 2; tag "NMD_likely_if_extended"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465864.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1968 chr19 HAVANA exon 15268905 15269042 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601071.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-006"; exon_number 2; exon_id "ENSE00003599168.1"; level 2; tag "NMD_likely_if_extended"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465864.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1969 chr19 HAVANA exon 15268154 15268240 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601071.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-006"; exon_number 3; exon_id "ENSE00003092216.1"; level 2; tag "NMD_likely_if_extended"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465864.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1970 chr19 HAVANA exon 15267514 15267551 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601071.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "BRD4-006"; exon_number 4; exon_id "ENSE00003072714.1"; level 2; tag "NMD_likely_if_extended"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465864.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1971 chr19 HAVANA transcript 15269013 15331907 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1972 chr19 HAVANA exon 15331836 15331907 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 1; exon_id "ENSE00003086805.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1973 chr19 HAVANA exon 15275657 15275839 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 2; exon_id "ENSE00003190228.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1974 chr19 HAVANA exon 15272815 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 3; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1975 chr19 HAVANA CDS 15272815 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 3; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1976 chr19 HAVANA start_codon 15273097 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 3; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1977 chr19 HAVANA exon 15269013 15269042 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 4; exon_id "ENSE00003017634.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1978 chr19 HAVANA CDS 15269013 15269042 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 4; exon_id "ENSE00003017634.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1979 chr19 HAVANA UTR 15331836 15331907 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 1; exon_id "ENSE00003086805.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1980 chr19 HAVANA UTR 15275657 15275839 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 2; exon_id "ENSE00003190228.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1981 chr19 HAVANA UTR 15273100 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000601941.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-008"; exon_number 3; exon_id "ENSE00001113202.1"; level 2; protein_id "ENSP00000471240.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000183252.8"; havana_transcript "OTTHUMT00000465865.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1982 chr19 ENSEMBL transcript 15268264 15332540 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1983 chr19 ENSEMBL exon 15332290 15332540 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 1; exon_id "ENSE00003761910.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1984 chr19 ENSEMBL exon 15272815 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 2; exon_id "ENSE00001113202.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1985 chr19 ENSEMBL CDS 15272815 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 2; exon_id "ENSE00001113202.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1986 chr19 ENSEMBL start_codon 15273097 15273099 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 2; exon_id "ENSE00001113202.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1987 chr19 ENSEMBL exon 15268905 15269042 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 3; exon_id "ENSE00003494168.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1988 chr19 ENSEMBL CDS 15268905 15269042 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 3; exon_id "ENSE00003494168.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1989 chr19 ENSEMBL exon 15268264 15268281 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 4; exon_id "ENSE00003767834.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1990 chr19 ENSEMBL CDS 15268267 15268281 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 4; exon_id "ENSE00003767834.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1991 chr19 ENSEMBL stop_codon 15268264 15268266 . - 0 gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 4; exon_id "ENSE00003767834.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1992 chr19 ENSEMBL UTR 15332290 15332540 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 1; exon_id "ENSE00003761910.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1993 chr19 ENSEMBL UTR 15273100 15273133 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 2; exon_id "ENSE00001113202.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1994 chr19 ENSEMBL UTR 15268264 15268266 . - . gene_id "ENSG00000141867.17"; transcript_id "ENST00000630599.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "BRD4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "BRD4-201"; exon_number 4; exon_id "ENSE00003767834.1"; level 3; protein_id "ENSP00000486621.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000183252.8";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1995 chr15 HAVANA transcript 87859751 88256747 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1996 chr15 HAVANA exon 88256644 88256747 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 1; exon_id "ENSE00001518611.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1997 chr15 HAVANA exon 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 2; exon_id "ENSE00001518609.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1998 chr15 HAVANA exon 88255906 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 3; exon_id "ENSE00002698509.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
1999 chr15 HAVANA CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 3; exon_id "ENSE00002698509.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2000 chr15 HAVANA start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 3; exon_id "ENSE00002698509.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2001 chr15 HAVANA exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 4; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2002 chr15 HAVANA CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 4; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2003 chr15 HAVANA exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 5; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2004 chr15 HAVANA CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 5; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2005 chr15 HAVANA exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 6; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2006 chr15 HAVANA CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 6; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2007 chr15 HAVANA exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 7; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2008 chr15 HAVANA CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 7; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2009 chr15 HAVANA exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 8; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2010 chr15 HAVANA CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 8; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2011 chr15 HAVANA exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 9; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2012 chr15 HAVANA CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 9; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2013 chr15 HAVANA exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 10; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2014 chr15 HAVANA CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 10; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2015 chr15 HAVANA exon 88128711 88128734 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 11; exon_id "ENSE00002535876.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2016 chr15 HAVANA CDS 88128711 88128734 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 11; exon_id "ENSE00002535876.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2017 chr15 HAVANA exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 12; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2018 chr15 HAVANA CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 12; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2019 chr15 HAVANA exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 13; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2020 chr15 HAVANA CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 13; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2021 chr15 HAVANA exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 14; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2022 chr15 HAVANA CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 14; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2023 chr15 HAVANA exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 15; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2024 chr15 HAVANA CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 15; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2025 chr15 HAVANA exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 16; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2026 chr15 HAVANA CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 16; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2027 chr15 HAVANA exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 17; exon_id "ENSE00003448289.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2028 chr15 HAVANA CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 17; exon_id "ENSE00003448289.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2029 chr15 HAVANA exon 87880270 87880428 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 18; exon_id "ENSE00001766468.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2030 chr15 HAVANA CDS 87880270 87880428 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 18; exon_id "ENSE00001766468.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2031 chr15 HAVANA exon 87859751 87877120 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 19; exon_id "ENSE00003748929.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2032 chr15 HAVANA CDS 87876938 87877120 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 19; exon_id "ENSE00003748929.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2033 chr15 HAVANA stop_codon 87876935 87876937 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 19; exon_id "ENSE00003748929.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2034 chr15 HAVANA UTR 88256644 88256747 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 1; exon_id "ENSE00001518611.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2035 chr15 HAVANA UTR 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 2; exon_id "ENSE00001518609.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2036 chr15 HAVANA UTR 88256154 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 3; exon_id "ENSE00002698509.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2037 chr15 HAVANA UTR 87859751 87876937 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000394480.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-001"; exon_number 19; exon_id "ENSE00003748929.1"; level 2; protein_id "ENSP00000377990.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS10340.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000309066.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2038 chr15 HAVANA transcript 87876757 88256169 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2039 chr15 HAVANA exon 88255906 88256169 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 1; exon_id "ENSE00003764006.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2040 chr15 HAVANA CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 1; exon_id "ENSE00003764006.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2041 chr15 HAVANA start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 1; exon_id "ENSE00003764006.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2042 chr15 HAVANA exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2043 chr15 HAVANA CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2044 chr15 HAVANA exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2045 chr15 HAVANA CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2046 chr15 HAVANA exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2047 chr15 HAVANA CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2048 chr15 HAVANA exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2049 chr15 HAVANA CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2050 chr15 HAVANA exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2051 chr15 HAVANA CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2052 chr15 HAVANA exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2053 chr15 HAVANA CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2054 chr15 HAVANA exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2055 chr15 HAVANA CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2056 chr15 HAVANA exon 88128711 88128734 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 9; exon_id "ENSE00002535876.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2057 chr15 HAVANA CDS 88128711 88128734 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 9; exon_id "ENSE00002535876.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2058 chr15 HAVANA exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 10; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2059 chr15 HAVANA CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 10; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2060 chr15 HAVANA exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 11; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2061 chr15 HAVANA CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 11; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2062 chr15 HAVANA exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 12; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2063 chr15 HAVANA CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 12; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2064 chr15 HAVANA exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 13; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2065 chr15 HAVANA CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 13; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2066 chr15 HAVANA exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 14; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2067 chr15 HAVANA CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 14; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2068 chr15 HAVANA exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 15; exon_id "ENSE00003448289.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2069 chr15 HAVANA CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 15; exon_id "ENSE00003448289.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2070 chr15 HAVANA exon 87885694 87885735 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 16; exon_id "ENSE00000943688.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2071 chr15 HAVANA CDS 87885694 87885735 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 16; exon_id "ENSE00000943688.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2072 chr15 HAVANA exon 87880270 87880428 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 17; exon_id "ENSE00001766468.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2073 chr15 HAVANA CDS 87880270 87880428 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 17; exon_id "ENSE00001766468.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2074 chr15 HAVANA exon 87876757 87877120 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 18; exon_id "ENSE00001518607.3"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2075 chr15 HAVANA CDS 87876938 87877120 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 18; exon_id "ENSE00001518607.3"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2076 chr15 HAVANA stop_codon 87876935 87876937 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 18; exon_id "ENSE00001518607.3"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2077 chr15 HAVANA UTR 88256154 88256169 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 1; exon_id "ENSE00003764006.1"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2078 chr15 HAVANA UTR 87876757 87876937 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000629765.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-018"; exon_number 18; exon_id "ENSE00001518607.3"; level 2; protein_id "ENSP00000485864.1"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480548.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2079 chr15 HAVANA transcript 87876789 88256153 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2080 chr15 HAVANA exon 88255906 88256153 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 1; exon_id "ENSE00003773447.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2081 chr15 HAVANA CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 1; exon_id "ENSE00003773447.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2082 chr15 HAVANA start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 1; exon_id "ENSE00003773447.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2083 chr15 HAVANA exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2084 chr15 HAVANA CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2085 chr15 HAVANA exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2086 chr15 HAVANA CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2087 chr15 HAVANA exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2088 chr15 HAVANA CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2089 chr15 HAVANA exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2090 chr15 HAVANA CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2091 chr15 HAVANA exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2092 chr15 HAVANA CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2093 chr15 HAVANA exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2094 chr15 HAVANA CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2095 chr15 HAVANA exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2096 chr15 HAVANA CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2097 chr15 HAVANA exon 88128711 88128734 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 9; exon_id "ENSE00002535876.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2098 chr15 HAVANA CDS 88128711 88128734 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 9; exon_id "ENSE00002535876.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2099 chr15 HAVANA exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 10; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2100 chr15 HAVANA CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 10; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2101 chr15 HAVANA exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 11; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2102 chr15 HAVANA CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 11; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2103 chr15 HAVANA exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 12; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2104 chr15 HAVANA CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 12; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2105 chr15 HAVANA exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 13; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2106 chr15 HAVANA CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 13; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2107 chr15 HAVANA exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 14; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2108 chr15 HAVANA CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 14; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2109 chr15 HAVANA exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 15; exon_id "ENSE00003448289.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2110 chr15 HAVANA CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 15; exon_id "ENSE00003448289.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2111 chr15 HAVANA exon 87908489 87908563 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 16; exon_id "ENSE00003774314.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2112 chr15 HAVANA CDS 87908489 87908563 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 16; exon_id "ENSE00003774314.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2113 chr15 HAVANA exon 87885694 87885735 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 17; exon_id "ENSE00000943688.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2114 chr15 HAVANA CDS 87885694 87885735 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 17; exon_id "ENSE00000943688.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2115 chr15 HAVANA exon 87880270 87880428 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 18; exon_id "ENSE00001766468.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2116 chr15 HAVANA CDS 87880270 87880428 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 18; exon_id "ENSE00001766468.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2117 chr15 HAVANA exon 87876789 87877120 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 19; exon_id "ENSE00003771720.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2118 chr15 HAVANA CDS 87876938 87877120 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 19; exon_id "ENSE00003771720.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2119 chr15 HAVANA stop_codon 87876935 87876937 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 19; exon_id "ENSE00003771720.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2120 chr15 HAVANA UTR 87876789 87876937 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000626019.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-019"; exon_number 19; exon_id "ENSE00003771720.1"; level 2; protein_id "ENSP00000486784.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000480549.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2121 chr15 HAVANA transcript 87876791 88256177 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2122 chr15 HAVANA exon 88255906 88256177 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 1; exon_id "ENSE00002542334.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2123 chr15 HAVANA CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 1; exon_id "ENSE00002542334.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2124 chr15 HAVANA start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 1; exon_id "ENSE00002542334.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2125 chr15 HAVANA exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2126 chr15 HAVANA CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2127 chr15 HAVANA exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2128 chr15 HAVANA CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2129 chr15 HAVANA exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2130 chr15 HAVANA CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2131 chr15 HAVANA exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2132 chr15 HAVANA CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2133 chr15 HAVANA exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2134 chr15 HAVANA CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2135 chr15 HAVANA exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2136 chr15 HAVANA CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2137 chr15 HAVANA exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2138 chr15 HAVANA CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2139 chr15 HAVANA exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 9; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2140 chr15 HAVANA CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 9; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2141 chr15 HAVANA exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 10; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2142 chr15 HAVANA CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 10; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2143 chr15 HAVANA exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 11; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2144 chr15 HAVANA CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 11; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2145 chr15 HAVANA exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 12; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2146 chr15 HAVANA CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 12; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2147 chr15 HAVANA exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 13; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2148 chr15 HAVANA CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 13; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2149 chr15 HAVANA exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 14; exon_id "ENSE00003448289.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2150 chr15 HAVANA CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 14; exon_id "ENSE00003448289.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2151 chr15 HAVANA exon 87880270 87880428 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 15; exon_id "ENSE00001766468.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2152 chr15 HAVANA CDS 87880270 87880428 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 15; exon_id "ENSE00001766468.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2153 chr15 HAVANA exon 87876791 87877120 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 16; exon_id "ENSE00001134128.5"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2154 chr15 HAVANA CDS 87876938 87877120 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 16; exon_id "ENSE00001134128.5"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2155 chr15 HAVANA stop_codon 87876935 87876937 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 16; exon_id "ENSE00001134128.5"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2156 chr15 HAVANA UTR 88256154 88256177 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 1; exon_id "ENSE00002542334.1"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2157 chr15 HAVANA UTR 87876791 87876937 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557856.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-004"; exon_number 16; exon_id "ENSE00001134128.5"; level 2; protein_id "ENSP00000453959.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415275.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2158 chr15 HAVANA transcript 87916262 87933090 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2159 chr15 HAVANA exon 87933012 87933090 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 1; exon_id "ENSE00002552235.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2160 chr15 HAVANA CDS 87933012 87933090 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 1; exon_id "ENSE00002552235.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2161 chr15 HAVANA exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 2; exon_id "ENSE00003448289.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2162 chr15 HAVANA CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 2; exon_id "ENSE00003448289.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2163 chr15 HAVANA exon 87925570 87925664 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 3; exon_id "ENSE00002554621.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2164 chr15 HAVANA CDS 87925570 87925664 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 3; exon_id "ENSE00002554621.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2165 chr15 HAVANA exon 87916262 87916560 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 4; exon_id "ENSE00002555363.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2166 chr15 HAVANA CDS 87916542 87916560 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 4; exon_id "ENSE00002555363.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2167 chr15 HAVANA stop_codon 87916539 87916541 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 4; exon_id "ENSE00002555363.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2168 chr15 HAVANA UTR 87916262 87916541 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558576.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-007"; exon_number 4; exon_id "ENSE00002555363.1"; level 1; protein_id "ENSP00000473315.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415276.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2169 chr15 HAVANA transcript 87916273 88205933 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2170 chr15 HAVANA exon 88205820 88205933 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 1; exon_id "ENSE00002207891.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2171 chr15 HAVANA exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 2; exon_id "ENSE00003596858.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2172 chr15 HAVANA CDS 88184225 88184253 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 2; exon_id "ENSE00003596858.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2173 chr15 HAVANA start_codon 88184251 88184253 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 2; exon_id "ENSE00003596858.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2174 chr15 HAVANA exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 3; exon_id "ENSE00003240255.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2175 chr15 HAVANA CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 3; exon_id "ENSE00003240255.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2176 chr15 HAVANA exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 4; exon_id "ENSE00003279643.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2177 chr15 HAVANA CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 4; exon_id "ENSE00003279643.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2178 chr15 HAVANA exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 5; exon_id "ENSE00002504927.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2179 chr15 HAVANA CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 5; exon_id "ENSE00002504927.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2180 chr15 HAVANA exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 6; exon_id "ENSE00002521985.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2181 chr15 HAVANA CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 6; exon_id "ENSE00002521985.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2182 chr15 HAVANA exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 7; exon_id "ENSE00003627946.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2183 chr15 HAVANA CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 7; exon_id "ENSE00003627946.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2184 chr15 HAVANA exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 8; exon_id "ENSE00003654103.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2185 chr15 HAVANA CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 8; exon_id "ENSE00003654103.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2186 chr15 HAVANA exon 88128711 88128734 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 9; exon_id "ENSE00002535876.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2187 chr15 HAVANA CDS 88128711 88128734 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 9; exon_id "ENSE00002535876.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2188 chr15 HAVANA exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 10; exon_id "ENSE00003313953.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2189 chr15 HAVANA CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 10; exon_id "ENSE00003313953.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2190 chr15 HAVANA exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 11; exon_id "ENSE00003330291.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2191 chr15 HAVANA CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 11; exon_id "ENSE00003330291.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2192 chr15 HAVANA exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 12; exon_id "ENSE00003656026.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2193 chr15 HAVANA CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 12; exon_id "ENSE00003656026.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2194 chr15 HAVANA exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 13; exon_id "ENSE00001134154.4"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2195 chr15 HAVANA CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 13; exon_id "ENSE00001134154.4"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2196 chr15 HAVANA exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 14; exon_id "ENSE00003541167.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2197 chr15 HAVANA CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 14; exon_id "ENSE00003541167.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2198 chr15 HAVANA exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 15; exon_id "ENSE00003448289.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2199 chr15 HAVANA CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 15; exon_id "ENSE00003448289.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2200 chr15 HAVANA exon 87916273 87916560 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 16; exon_id "ENSE00002271809.2"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2201 chr15 HAVANA CDS 87916549 87916560 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 16; exon_id "ENSE00002271809.2"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2202 chr15 HAVANA stop_codon 87916546 87916548 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 16; exon_id "ENSE00002271809.2"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2203 chr15 HAVANA UTR 88205820 88205933 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 1; exon_id "ENSE00002207891.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2204 chr15 HAVANA UTR 88184254 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 2; exon_id "ENSE00003596858.1"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2205 chr15 HAVANA UTR 87916273 87916548 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000542733.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-003"; exon_number 16; exon_id "ENSE00002271809.2"; level 1; protein_id "ENSP00000437773.2"; tag "basic"; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415277.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2206 chr15 HAVANA transcript 87926656 88256179 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2207 chr15 HAVANA exon 88255906 88256179 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 1; exon_id "ENSE00002564013.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2208 chr15 HAVANA CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 1; exon_id "ENSE00002564013.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2209 chr15 HAVANA start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 1; exon_id "ENSE00002564013.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2210 chr15 HAVANA exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2211 chr15 HAVANA CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2212 chr15 HAVANA exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2213 chr15 HAVANA CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2214 chr15 HAVANA exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2215 chr15 HAVANA CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2216 chr15 HAVANA exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2217 chr15 HAVANA CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2218 chr15 HAVANA exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2219 chr15 HAVANA CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2220 chr15 HAVANA exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2221 chr15 HAVANA CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2222 chr15 HAVANA exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2223 chr15 HAVANA CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2224 chr15 HAVANA exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 9; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2225 chr15 HAVANA CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 9; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2226 chr15 HAVANA exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 10; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2227 chr15 HAVANA CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 10; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2228 chr15 HAVANA exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 11; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2229 chr15 HAVANA CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 11; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2230 chr15 HAVANA exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 12; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2231 chr15 HAVANA CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 12; exon_id "ENSE00001134154.4"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2232 chr15 HAVANA exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 13; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2233 chr15 HAVANA CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 13; exon_id "ENSE00003541167.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2234 chr15 HAVANA exon 87926656 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 14; exon_id "ENSE00002541357.2"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2235 chr15 HAVANA CDS 87929185 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 14; exon_id "ENSE00002541357.2"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2236 chr15 HAVANA stop_codon 87929182 87929184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 14; exon_id "ENSE00002541357.2"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2237 chr15 HAVANA UTR 88256154 88256179 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 1; exon_id "ENSE00002564013.1"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2238 chr15 HAVANA UTR 87926656 87929184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558676.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-015"; exon_number 14; exon_id "ENSE00002541357.2"; level 2; protein_id "ENSP00000453511.1"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416153.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2239 chr15 HAVANA transcript 87931082 87940735 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559680.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-008"; level 1; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415278.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2240 chr15 HAVANA exon 87940623 87940735 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559680.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-008"; exon_number 1; exon_id "ENSE00002550552.1"; level 1; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415278.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2241 chr15 HAVANA exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559680.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-008"; exon_number 2; exon_id "ENSE00003689405.1"; level 1; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415278.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2242 chr15 HAVANA exon 87931082 87931236 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559680.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-008"; exon_number 3; exon_id "ENSE00002568381.1"; level 1; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415278.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2243 chr15 HAVANA transcript 87977364 88256159 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2244 chr15 HAVANA exon 88255906 88256159 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 1; exon_id "ENSE00002296343.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2245 chr15 HAVANA CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 1; exon_id "ENSE00002296343.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2246 chr15 HAVANA start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 1; exon_id "ENSE00002296343.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2247 chr15 HAVANA exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2248 chr15 HAVANA CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 2; exon_id "ENSE00003664319.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2249 chr15 HAVANA exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2250 chr15 HAVANA CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 3; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2251 chr15 HAVANA exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2252 chr15 HAVANA CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 4; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2253 chr15 HAVANA exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2254 chr15 HAVANA CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 5; exon_id "ENSE00002504927.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2255 chr15 HAVANA exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2256 chr15 HAVANA CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 6; exon_id "ENSE00002521985.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2257 chr15 HAVANA exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2258 chr15 HAVANA CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 7; exon_id "ENSE00003627946.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2259 chr15 HAVANA exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2260 chr15 HAVANA CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 8; exon_id "ENSE00003654103.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2261 chr15 HAVANA exon 88128711 88128734 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 9; exon_id "ENSE00002535876.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2262 chr15 HAVANA CDS 88128711 88128734 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 9; exon_id "ENSE00002535876.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2263 chr15 HAVANA exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 10; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2264 chr15 HAVANA CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 10; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2265 chr15 HAVANA exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 11; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2266 chr15 HAVANA CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 11; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2267 chr15 HAVANA exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 12; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2268 chr15 HAVANA CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 12; exon_id "ENSE00003656026.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2269 chr15 HAVANA exon 87981226 87981360 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 13; exon_id "ENSE00001217906.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2270 chr15 HAVANA CDS 87981226 87981360 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 13; exon_id "ENSE00001217906.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2271 chr15 HAVANA exon 87977364 87979463 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 14; exon_id "ENSE00001218041.4"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2272 chr15 HAVANA CDS 87979348 87979463 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 14; exon_id "ENSE00001218041.4"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2273 chr15 HAVANA stop_codon 87979345 87979347 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 14; exon_id "ENSE00001218041.4"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2274 chr15 HAVANA UTR 88256154 88256159 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 1; exon_id "ENSE00002296343.1"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2275 chr15 HAVANA UTR 87977364 87979347 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000317501.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-002"; exon_number 14; exon_id "ENSE00001218041.4"; level 2; protein_id "ENSP00000318328.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000403049.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2276 chr15 HAVANA transcript 87977367 87978803 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-016"; level 1; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416154.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2277 chr15 HAVANA exon 87978605 87978803 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-016"; exon_number 1; exon_id "ENSE00002542494.1"; level 1; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416154.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2278 chr15 HAVANA exon 87977367 87977591 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560201.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-016"; exon_number 2; exon_id "ENSE00002564171.1"; level 1; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416154.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2279 chr15 HAVANA transcript 87979054 88127191 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2280 chr15 HAVANA exon 88127162 88127191 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; exon_number 1; exon_id "ENSE00002569186.1"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2281 chr15 HAVANA CDS 88127162 88127191 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; exon_number 1; exon_id "ENSE00002569186.1"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2282 chr15 HAVANA exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; exon_number 2; exon_id "ENSE00003618737.1"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2283 chr15 HAVANA CDS 88032929 88033045 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; exon_number 2; exon_id "ENSE00003618737.1"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2284 chr15 HAVANA stop_codon 88032926 88032928 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; exon_number 2; exon_id "ENSE00003618737.1"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2285 chr15 HAVANA exon 87979054 87979463 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; exon_number 3; exon_id "ENSE00002554190.1"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2286 chr15 HAVANA UTR 88032857 88032928 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; exon_number 2; exon_id "ENSE00003618737.1"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2287 chr15 HAVANA UTR 87979054 87979463 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000558306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "NTRK3-017"; exon_number 3; exon_id "ENSE00002554190.1"; level 2; protein_id "ENSP00000480693.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000416155.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2288 chr15 HAVANA transcript 88072424 88099265 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560739.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-006"; level 1; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415279.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2289 chr15 HAVANA exon 88099003 88099265 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560739.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-006"; exon_number 1; exon_id "ENSE00002564900.1"; level 1; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415279.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2290 chr15 HAVANA exon 88098529 88098661 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560739.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-006"; exon_number 2; exon_id "ENSE00002558890.1"; level 1; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415279.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2291 chr15 HAVANA exon 88072424 88072599 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560739.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-006"; exon_number 3; exon_id "ENSE00002570331.1"; level 1; transcript_support_level "2"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415279.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2292 chr15 HAVANA transcript 88072551 88135938 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2293 chr15 HAVANA exon 88135899 88135938 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; exon_number 1; exon_id "ENSE00002562852.1"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2294 chr15 HAVANA CDS 88135899 88135938 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; exon_number 1; exon_id "ENSE00002562852.1"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2295 chr15 HAVANA exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; exon_number 2; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2296 chr15 HAVANA CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; exon_number 2; exon_id "ENSE00003313953.1"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2297 chr15 HAVANA exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; exon_number 3; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2298 chr15 HAVANA CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; exon_number 3; exon_id "ENSE00003330291.1"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2299 chr15 HAVANA exon 88072551 88072599 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; exon_number 4; exon_id "ENSE00002547879.1"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2300 chr15 HAVANA CDS 88072551 88072599 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000560017.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-010"; exon_number 4; exon_id "ENSE00002547879.1"; level 2; protein_id "ENSP00000473475.1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415280.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2301 chr15 HAVANA transcript 88072601 88126361 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-009"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415281.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2302 chr15 HAVANA exon 88126271 88126361 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-009"; exon_number 1; exon_id "ENSE00002540301.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415281.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2303 chr15 HAVANA exon 88072601 88072907 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000557897.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-009"; exon_number 2; exon_id "ENSE00002543525.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415281.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2304 chr15 HAVANA transcript 88131969 88136478 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559764.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-011"; level 1; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415282.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2305 chr15 HAVANA exon 88136467 88136478 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559764.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-011"; exon_number 1; exon_id "ENSE00003288530.1"; level 1; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415282.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2306 chr15 HAVANA exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559764.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-011"; exon_number 2; exon_id "ENSE00003555270.1"; level 1; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415282.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2307 chr15 HAVANA exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559764.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-011"; exon_number 3; exon_id "ENSE00003587149.1"; level 1; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415282.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2308 chr15 HAVANA exon 88131969 88132055 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559764.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-011"; exon_number 4; exon_id "ENSE00002558515.1"; level 1; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415282.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2309 chr15 HAVANA transcript 88137461 88252622 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2310 chr15 HAVANA exon 88252523 88252622 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 1; exon_id "ENSE00002549615.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2311 chr15 HAVANA exon 88209966 88210083 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 2; exon_id "ENSE00002552283.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2312 chr15 HAVANA exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 3; exon_id "ENSE00003596858.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2313 chr15 HAVANA CDS 88184225 88184253 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 3; exon_id "ENSE00003596858.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2314 chr15 HAVANA start_codon 88184251 88184253 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 3; exon_id "ENSE00003596858.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2315 chr15 HAVANA exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 4; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2316 chr15 HAVANA CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 4; exon_id "ENSE00003240255.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2317 chr15 HAVANA exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 5; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2318 chr15 HAVANA CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 5; exon_id "ENSE00003279643.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2319 chr15 HAVANA exon 88137461 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 6; exon_id "ENSE00002567015.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2320 chr15 HAVANA CDS 88137461 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 6; exon_id "ENSE00002567015.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2321 chr15 HAVANA UTR 88252523 88252622 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 1; exon_id "ENSE00002549615.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2322 chr15 HAVANA UTR 88209966 88210083 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 2; exon_id "ENSE00002552283.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2323 chr15 HAVANA UTR 88184254 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559188.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-005"; exon_number 3; exon_id "ENSE00003596858.1"; level 2; protein_id "ENSP00000473656.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415283.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2324 chr15 HAVANA transcript 88255906 88256768 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559067.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-013"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415793.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2325 chr15 HAVANA exon 88256644 88256768 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559067.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-013"; exon_number 1; exon_id "ENSE00002550046.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415793.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2326 chr15 HAVANA exon 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559067.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-013"; exon_number 2; exon_id "ENSE00001518609.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415793.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2327 chr15 HAVANA exon 88255906 88256131 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000559067.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "NTRK3-013"; exon_number 3; exon_id "ENSE00002555505.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000148677.12"; havana_transcript "OTTHUMT00000415793.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2328 chr15 ENSEMBL transcript 87979345 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2329 chr15 ENSEMBL exon 88256644 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 1; exon_id "ENSE00003753004.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2330 chr15 ENSEMBL exon 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 2; exon_id "ENSE00001518609.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2331 chr15 ENSEMBL exon 88255906 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2332 chr15 ENSEMBL CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2333 chr15 ENSEMBL start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2334 chr15 ENSEMBL exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 4; exon_id "ENSE00003664319.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2335 chr15 ENSEMBL CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 4; exon_id "ENSE00003664319.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2336 chr15 ENSEMBL exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 5; exon_id "ENSE00003240255.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2337 chr15 ENSEMBL CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 5; exon_id "ENSE00003240255.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2338 chr15 ENSEMBL exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 6; exon_id "ENSE00003279643.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2339 chr15 ENSEMBL CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 6; exon_id "ENSE00003279643.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2340 chr15 ENSEMBL exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 7; exon_id "ENSE00002504927.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2341 chr15 ENSEMBL CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 7; exon_id "ENSE00002504927.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2342 chr15 ENSEMBL exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 8; exon_id "ENSE00002521985.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2343 chr15 ENSEMBL CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 8; exon_id "ENSE00002521985.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2344 chr15 ENSEMBL exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 9; exon_id "ENSE00003627946.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2345 chr15 ENSEMBL CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 9; exon_id "ENSE00003627946.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2346 chr15 ENSEMBL exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 10; exon_id "ENSE00003654103.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2347 chr15 ENSEMBL CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 10; exon_id "ENSE00003654103.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2348 chr15 ENSEMBL exon 88128711 88128734 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 11; exon_id "ENSE00002535876.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2349 chr15 ENSEMBL CDS 88128711 88128734 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 11; exon_id "ENSE00002535876.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2350 chr15 ENSEMBL exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 12; exon_id "ENSE00003313953.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2351 chr15 ENSEMBL CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 12; exon_id "ENSE00003313953.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2352 chr15 ENSEMBL exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 13; exon_id "ENSE00003330291.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2353 chr15 ENSEMBL CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 13; exon_id "ENSE00003330291.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2354 chr15 ENSEMBL exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 14; exon_id "ENSE00003656026.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2355 chr15 ENSEMBL CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 14; exon_id "ENSE00003656026.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2356 chr15 ENSEMBL exon 87981226 87981360 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 15; exon_id "ENSE00001217906.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2357 chr15 ENSEMBL CDS 87981226 87981360 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 15; exon_id "ENSE00001217906.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2358 chr15 ENSEMBL exon 87979345 87979463 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 16; exon_id "ENSE00002225801.2"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2359 chr15 ENSEMBL CDS 87979348 87979463 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 16; exon_id "ENSE00002225801.2"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2360 chr15 ENSEMBL stop_codon 87979345 87979347 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 16; exon_id "ENSE00002225801.2"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2361 chr15 ENSEMBL UTR 88256644 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 1; exon_id "ENSE00003753004.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2362 chr15 ENSEMBL UTR 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 2; exon_id "ENSE00001518609.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2363 chr15 ENSEMBL UTR 88256154 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2364 chr15 ENSEMBL UTR 87979345 87979347 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000540489.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-204"; exon_number 16; exon_id "ENSE00002225801.2"; level 3; protein_id "ENSP00000444673.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32323.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2365 chr15 ENSEMBL transcript 87876757 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2366 chr15 ENSEMBL exon 88256644 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 1; exon_id "ENSE00003753004.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2367 chr15 ENSEMBL exon 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 2; exon_id "ENSE00001518609.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2368 chr15 ENSEMBL exon 88255906 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2369 chr15 ENSEMBL CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2370 chr15 ENSEMBL start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2371 chr15 ENSEMBL exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 4; exon_id "ENSE00003664319.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2372 chr15 ENSEMBL CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 4; exon_id "ENSE00003664319.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2373 chr15 ENSEMBL exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 5; exon_id "ENSE00003240255.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2374 chr15 ENSEMBL CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 5; exon_id "ENSE00003240255.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2375 chr15 ENSEMBL exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 6; exon_id "ENSE00003279643.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2376 chr15 ENSEMBL CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 6; exon_id "ENSE00003279643.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2377 chr15 ENSEMBL exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 7; exon_id "ENSE00002504927.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2378 chr15 ENSEMBL CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 7; exon_id "ENSE00002504927.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2379 chr15 ENSEMBL exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 8; exon_id "ENSE00002521985.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2380 chr15 ENSEMBL CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 8; exon_id "ENSE00002521985.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2381 chr15 ENSEMBL exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 9; exon_id "ENSE00003627946.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2382 chr15 ENSEMBL CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 9; exon_id "ENSE00003627946.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2383 chr15 ENSEMBL exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 10; exon_id "ENSE00003654103.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2384 chr15 ENSEMBL CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 10; exon_id "ENSE00003654103.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2385 chr15 ENSEMBL exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 11; exon_id "ENSE00003313953.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2386 chr15 ENSEMBL CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 11; exon_id "ENSE00003313953.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2387 chr15 ENSEMBL exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 12; exon_id "ENSE00003330291.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2388 chr15 ENSEMBL CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 12; exon_id "ENSE00003330291.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2389 chr15 ENSEMBL exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 13; exon_id "ENSE00003656026.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2390 chr15 ENSEMBL CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 13; exon_id "ENSE00003656026.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2391 chr15 ENSEMBL exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 14; exon_id "ENSE00001134154.4"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2392 chr15 ENSEMBL CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 14; exon_id "ENSE00001134154.4"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2393 chr15 ENSEMBL exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 15; exon_id "ENSE00003541167.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2394 chr15 ENSEMBL CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 15; exon_id "ENSE00003541167.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2395 chr15 ENSEMBL exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 16; exon_id "ENSE00003448289.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2396 chr15 ENSEMBL CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 16; exon_id "ENSE00003448289.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2397 chr15 ENSEMBL exon 87880270 87880428 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 17; exon_id "ENSE00001766468.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2398 chr15 ENSEMBL CDS 87880270 87880428 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 17; exon_id "ENSE00001766468.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2399 chr15 ENSEMBL exon 87876757 87877120 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 18; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2400 chr15 ENSEMBL CDS 87876938 87877120 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 18; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2401 chr15 ENSEMBL stop_codon 87876935 87876937 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 18; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2402 chr15 ENSEMBL UTR 88256644 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 1; exon_id "ENSE00003753004.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2403 chr15 ENSEMBL UTR 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 2; exon_id "ENSE00001518609.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2404 chr15 ENSEMBL UTR 88256154 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2405 chr15 ENSEMBL UTR 87876757 87876937 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000355254.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-201"; exon_number 18; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000347397.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS58399.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2406 chr15 ENSEMBL transcript 87876757 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2407 chr15 ENSEMBL exon 88256644 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 1; exon_id "ENSE00003753004.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2408 chr15 ENSEMBL exon 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 2; exon_id "ENSE00001518609.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2409 chr15 ENSEMBL exon 88255906 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2410 chr15 ENSEMBL CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2411 chr15 ENSEMBL start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2412 chr15 ENSEMBL exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 4; exon_id "ENSE00003664319.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2413 chr15 ENSEMBL CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 4; exon_id "ENSE00003664319.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2414 chr15 ENSEMBL exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 5; exon_id "ENSE00003240255.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2415 chr15 ENSEMBL CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 5; exon_id "ENSE00003240255.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2416 chr15 ENSEMBL exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 6; exon_id "ENSE00003279643.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2417 chr15 ENSEMBL CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 6; exon_id "ENSE00003279643.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2418 chr15 ENSEMBL exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 7; exon_id "ENSE00002504927.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2419 chr15 ENSEMBL CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 7; exon_id "ENSE00002504927.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2420 chr15 ENSEMBL exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 8; exon_id "ENSE00002521985.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2421 chr15 ENSEMBL CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 8; exon_id "ENSE00002521985.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2422 chr15 ENSEMBL exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 9; exon_id "ENSE00003627946.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2423 chr15 ENSEMBL CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 9; exon_id "ENSE00003627946.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2424 chr15 ENSEMBL exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 10; exon_id "ENSE00003654103.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2425 chr15 ENSEMBL CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 10; exon_id "ENSE00003654103.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2426 chr15 ENSEMBL exon 88128711 88128734 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 11; exon_id "ENSE00002535876.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2427 chr15 ENSEMBL CDS 88128711 88128734 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 11; exon_id "ENSE00002535876.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2428 chr15 ENSEMBL exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 12; exon_id "ENSE00003313953.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2429 chr15 ENSEMBL CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 12; exon_id "ENSE00003313953.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2430 chr15 ENSEMBL exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 13; exon_id "ENSE00003330291.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2431 chr15 ENSEMBL CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 13; exon_id "ENSE00003330291.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2432 chr15 ENSEMBL exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 14; exon_id "ENSE00003656026.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2433 chr15 ENSEMBL CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 14; exon_id "ENSE00003656026.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2434 chr15 ENSEMBL exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 15; exon_id "ENSE00001134154.4"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2435 chr15 ENSEMBL CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 15; exon_id "ENSE00001134154.4"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2436 chr15 ENSEMBL exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 16; exon_id "ENSE00003541167.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2437 chr15 ENSEMBL CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 16; exon_id "ENSE00003541167.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2438 chr15 ENSEMBL exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 17; exon_id "ENSE00003448289.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2439 chr15 ENSEMBL CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 17; exon_id "ENSE00003448289.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2440 chr15 ENSEMBL exon 87885694 87885735 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 18; exon_id "ENSE00000943688.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2441 chr15 ENSEMBL CDS 87885694 87885735 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 18; exon_id "ENSE00000943688.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2442 chr15 ENSEMBL exon 87880270 87880428 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 19; exon_id "ENSE00001766468.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2443 chr15 ENSEMBL CDS 87880270 87880428 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 19; exon_id "ENSE00001766468.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2444 chr15 ENSEMBL exon 87876757 87877120 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 20; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2445 chr15 ENSEMBL CDS 87876938 87877120 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 20; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2446 chr15 ENSEMBL stop_codon 87876935 87876937 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 20; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2447 chr15 ENSEMBL UTR 88256644 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 1; exon_id "ENSE00003753004.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2448 chr15 ENSEMBL UTR 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 2; exon_id "ENSE00001518609.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2449 chr15 ENSEMBL UTR 88256154 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2450 chr15 ENSEMBL UTR 87876757 87876937 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000360948.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-203"; exon_number 20; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000354207.2"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS32322.1"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2451 chr15 ENSEMBL transcript 87876757 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2452 chr15 ENSEMBL exon 88256644 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 1; exon_id "ENSE00003753004.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2453 chr15 ENSEMBL exon 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 2; exon_id "ENSE00001518609.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2454 chr15 ENSEMBL exon 88255906 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2455 chr15 ENSEMBL CDS 88255906 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2456 chr15 ENSEMBL start_codon 88256151 88256153 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2457 chr15 ENSEMBL exon 88184225 88184299 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 4; exon_id "ENSE00003664319.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2458 chr15 ENSEMBL CDS 88184225 88184299 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 4; exon_id "ENSE00003664319.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2459 chr15 ENSEMBL exon 88183418 88183489 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 5; exon_id "ENSE00003240255.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2460 chr15 ENSEMBL CDS 88183418 88183489 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 5; exon_id "ENSE00003240255.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2461 chr15 ENSEMBL exon 88147335 88147403 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 6; exon_id "ENSE00003279643.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2462 chr15 ENSEMBL CDS 88147335 88147403 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 6; exon_id "ENSE00003279643.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2463 chr15 ENSEMBL exon 88137404 88137561 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 7; exon_id "ENSE00002504927.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2464 chr15 ENSEMBL CDS 88137404 88137561 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 7; exon_id "ENSE00002504927.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2465 chr15 ENSEMBL exon 88136467 88136609 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 8; exon_id "ENSE00002521985.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2466 chr15 ENSEMBL CDS 88136467 88136609 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 8; exon_id "ENSE00002521985.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2467 chr15 ENSEMBL exon 88135899 88136040 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 9; exon_id "ENSE00003627946.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2468 chr15 ENSEMBL CDS 88135899 88136040 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 9; exon_id "ENSE00003627946.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2469 chr15 ENSEMBL exon 88135101 88135397 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 10; exon_id "ENSE00003654103.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2470 chr15 ENSEMBL CDS 88135101 88135397 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 10; exon_id "ENSE00003654103.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2471 chr15 ENSEMBL exon 88127162 88127226 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 11; exon_id "ENSE00003313953.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2472 chr15 ENSEMBL CDS 88127162 88127226 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 11; exon_id "ENSE00003313953.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2473 chr15 ENSEMBL exon 88126271 88126373 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 12; exon_id "ENSE00003330291.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2474 chr15 ENSEMBL CDS 88126271 88126373 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 12; exon_id "ENSE00003330291.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2475 chr15 ENSEMBL exon 88032857 88033045 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 13; exon_id "ENSE00003656026.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2476 chr15 ENSEMBL CDS 88032857 88033045 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 13; exon_id "ENSE00003656026.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2477 chr15 ENSEMBL exon 87940623 87940753 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 14; exon_id "ENSE00001134154.4"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2478 chr15 ENSEMBL CDS 87940623 87940753 . - 2 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 14; exon_id "ENSE00001134154.4"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2479 chr15 ENSEMBL exon 87933012 87933184 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 15; exon_id "ENSE00003541167.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2480 chr15 ENSEMBL CDS 87933012 87933184 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 15; exon_id "ENSE00003541167.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2481 chr15 ENSEMBL exon 87929191 87929434 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 16; exon_id "ENSE00003448289.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2482 chr15 ENSEMBL CDS 87929191 87929434 . - 1 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 16; exon_id "ENSE00003448289.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2483 chr15 ENSEMBL exon 87885694 87885735 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 17; exon_id "ENSE00000943688.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2484 chr15 ENSEMBL CDS 87885694 87885735 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 17; exon_id "ENSE00000943688.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2485 chr15 ENSEMBL exon 87880270 87880428 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 18; exon_id "ENSE00001766468.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2486 chr15 ENSEMBL CDS 87880270 87880428 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 18; exon_id "ENSE00001766468.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2487 chr15 ENSEMBL exon 87876757 87877120 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 19; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2488 chr15 ENSEMBL CDS 87876938 87877120 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 19; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2489 chr15 ENSEMBL stop_codon 87876935 87876937 . - 0 gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 19; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2490 chr15 ENSEMBL UTR 88256644 88256731 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 1; exon_id "ENSE00003753004.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2491 chr15 ENSEMBL UTR 88256284 88256486 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 2; exon_id "ENSE00001518609.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2492 chr15 ENSEMBL UTR 88256154 88256168 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 3; exon_id "ENSE00002698509.1"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2493 chr15 ENSEMBL UTR 87876757 87876937 . - . gene_id "ENSG00000140538.16"; transcript_id "ENST00000357724.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NTRK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NTRK3-202"; exon_number 19; exon_id "ENSE00001518607.3"; level 3; protein_id "ENSP00000350356.2"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000148677.12";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2494 chr17 HAVANA transcript 75751594 75765236 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2495 chr17 HAVANA exon 75764972 75765236 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 1; exon_id "ENSE00002917133.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2496 chr17 HAVANA CDS 75764972 75765136 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 1; exon_id "ENSE00002917133.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2497 chr17 HAVANA start_codon 75765134 75765136 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 1; exon_id "ENSE00002917133.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2498 chr17 HAVANA exon 75763897 75764086 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 2; exon_id "ENSE00003624195.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2499 chr17 HAVANA CDS 75763897 75764086 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 2; exon_id "ENSE00003624195.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2500 chr17 HAVANA exon 75763320 75763439 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 3; exon_id "ENSE00000744747.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2501 chr17 HAVANA CDS 75763320 75763439 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 3; exon_id "ENSE00000744747.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2502 chr17 HAVANA exon 75763014 75763149 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 4; exon_id "ENSE00000744745.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2503 chr17 HAVANA CDS 75763014 75763149 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 4; exon_id "ENSE00000744745.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2504 chr17 HAVANA exon 75762704 75762885 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 5; exon_id "ENSE00003542217.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2505 chr17 HAVANA CDS 75762704 75762885 . - 1 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 5; exon_id "ENSE00003542217.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2506 chr17 HAVANA exon 75758449 75758599 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 6; exon_id "ENSE00000744742.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2507 chr17 HAVANA CDS 75758449 75758599 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 6; exon_id "ENSE00000744742.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2508 chr17 HAVANA exon 75758210 75758372 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 7; exon_id "ENSE00000744741.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2509 chr17 HAVANA CDS 75758210 75758372 . - 1 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 7; exon_id "ENSE00000744741.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2510 chr17 HAVANA exon 75758034 75758127 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 8; exon_id "ENSE00003506899.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2511 chr17 HAVANA CDS 75758059 75758127 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 8; exon_id "ENSE00003506899.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2512 chr17 HAVANA stop_codon 75758056 75758058 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 8; exon_id "ENSE00003506899.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2513 chr17 HAVANA exon 75751594 75751737 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 9; exon_id "ENSE00002934621.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2514 chr17 HAVANA UTR 75765137 75765236 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 1; exon_id "ENSE00002917133.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2515 chr17 HAVANA UTR 75758034 75758058 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 8; exon_id "ENSE00003506899.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2516 chr17 HAVANA UTR 75751594 75751737 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000225614.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-002"; exon_number 9; exon_id "ENSE00002934621.1"; level 2; protein_id "ENSP00000225614.1"; tag "alternative_3_UTR"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448427.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2517 chr17 HAVANA transcript 75751679 75758519 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000589643.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-009"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448428.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2518 chr17 HAVANA exon 75758360 75758519 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000589643.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-009"; exon_number 1; exon_id "ENSE00002751235.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448428.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2519 chr17 HAVANA exon 75758034 75758127 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000589643.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-009"; exon_number 2; exon_id "ENSE00003522124.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448428.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2520 chr17 HAVANA exon 75751679 75751737 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000589643.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-009"; exon_number 3; exon_id "ENSE00002916119.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448428.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2521 chr17 HAVANA transcript 75757894 75763090 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2522 chr17 HAVANA exon 75763014 75763090 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 1; exon_id "ENSE00002882923.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2523 chr17 HAVANA CDS 75763014 75763090 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 1; exon_id "ENSE00002882923.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2524 chr17 HAVANA exon 75762704 75762795 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 2; exon_id "ENSE00002833827.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2525 chr17 HAVANA CDS 75762704 75762795 . - 1 gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 2; exon_id "ENSE00002833827.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2526 chr17 HAVANA exon 75758449 75758599 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 3; exon_id "ENSE00000744742.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2527 chr17 HAVANA CDS 75758449 75758599 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 3; exon_id "ENSE00000744742.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2528 chr17 HAVANA exon 75758210 75758372 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 4; exon_id "ENSE00000744741.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2529 chr17 HAVANA CDS 75758210 75758372 . - 1 gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 4; exon_id "ENSE00000744741.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2530 chr17 HAVANA exon 75757894 75758127 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 5; exon_id "ENSE00002926365.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2531 chr17 HAVANA CDS 75758059 75758127 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 5; exon_id "ENSE00002926365.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2532 chr17 HAVANA stop_codon 75758056 75758058 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 5; exon_id "ENSE00002926365.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2533 chr17 HAVANA UTR 75757894 75758058 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592997.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-007"; exon_number 5; exon_id "ENSE00002926365.1"; level 2; protein_id "ENSP00000464765.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448429.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2534 chr17 HAVANA transcript 75757944 75765711 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2535 chr17 HAVANA exon 75764972 75765711 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 1; exon_id "ENSE00002747537.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2536 chr17 HAVANA CDS 75764972 75765136 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 1; exon_id "ENSE00002747537.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2537 chr17 HAVANA start_codon 75765134 75765136 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 1; exon_id "ENSE00002747537.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2538 chr17 HAVANA exon 75763897 75764086 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 2; exon_id "ENSE00003624195.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2539 chr17 HAVANA CDS 75763897 75764086 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 2; exon_id "ENSE00003624195.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2540 chr17 HAVANA exon 75763320 75763439 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 3; exon_id "ENSE00000744747.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2541 chr17 HAVANA CDS 75763320 75763439 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 3; exon_id "ENSE00000744747.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2542 chr17 HAVANA exon 75763014 75763149 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 4; exon_id "ENSE00000744745.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2543 chr17 HAVANA CDS 75763014 75763149 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 4; exon_id "ENSE00000744745.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2544 chr17 HAVANA exon 75762704 75762885 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 5; exon_id "ENSE00003542217.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2545 chr17 HAVANA CDS 75762704 75762885 . - 1 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 5; exon_id "ENSE00003542217.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2546 chr17 HAVANA exon 75758449 75758599 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 6; exon_id "ENSE00000744742.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2547 chr17 HAVANA CDS 75758449 75758599 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 6; exon_id "ENSE00000744742.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2548 chr17 HAVANA exon 75758210 75758372 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 7; exon_id "ENSE00000744741.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2549 chr17 HAVANA CDS 75758210 75758372 . - 1 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 7; exon_id "ENSE00000744741.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2550 chr17 HAVANA exon 75757944 75758127 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 8; exon_id "ENSE00001320710.3"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2551 chr17 HAVANA CDS 75758059 75758127 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 8; exon_id "ENSE00001320710.3"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2552 chr17 HAVANA stop_codon 75758056 75758058 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 8; exon_id "ENSE00001320710.3"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2553 chr17 HAVANA UTR 75765137 75765711 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 1; exon_id "ENSE00002747537.1"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2554 chr17 HAVANA UTR 75757944 75758058 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000588479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "GALK1-001"; exon_number 8; exon_id "ENSE00001320710.3"; level 2; protein_id "ENSP00000465930.1"; tag "upstream_ATG"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS11728.1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448430.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2555 chr17 HAVANA transcript 75757972 75758518 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586733.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-008"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448431.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2556 chr17 HAVANA exon 75758210 75758518 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586733.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-008"; exon_number 1; exon_id "ENSE00002859249.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448431.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2557 chr17 HAVANA exon 75757972 75758127 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586733.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-008"; exon_number 2; exon_id "ENSE00002768653.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448431.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2558 chr17 HAVANA transcript 75758512 75764005 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2559 chr17 HAVANA exon 75763897 75764005 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 1; exon_id "ENSE00002740965.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2560 chr17 HAVANA CDS 75763897 75764005 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 1; exon_id "ENSE00002740965.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2561 chr17 HAVANA exon 75763320 75763439 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 2; exon_id "ENSE00000744747.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2562 chr17 HAVANA CDS 75763320 75763439 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 2; exon_id "ENSE00000744747.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2563 chr17 HAVANA exon 75763014 75763181 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 3; exon_id "ENSE00002967444.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2564 chr17 HAVANA CDS 75763138 75763181 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 3; exon_id "ENSE00002967444.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2565 chr17 HAVANA stop_codon 75763135 75763137 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 3; exon_id "ENSE00002967444.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2566 chr17 HAVANA exon 75762704 75762885 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 4; exon_id "ENSE00003610486.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2567 chr17 HAVANA exon 75758512 75758599 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 5; exon_id "ENSE00002814694.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2568 chr17 HAVANA UTR 75763014 75763137 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 3; exon_id "ENSE00002967444.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2569 chr17 HAVANA UTR 75762704 75762885 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 4; exon_id "ENSE00003610486.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2570 chr17 HAVANA UTR 75758512 75758599 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000587707.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-006"; exon_number 5; exon_id "ENSE00002814694.1"; level 2; protein_id "ENSP00000468341.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448432.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2571 chr17 HAVANA transcript 75758591 75765157 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592494.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-004"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448433.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2572 chr17 HAVANA exon 75764972 75765157 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592494.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-004"; exon_number 1; exon_id "ENSE00002927739.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448433.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2573 chr17 HAVANA exon 75763897 75764086 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592494.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-004"; exon_number 2; exon_id "ENSE00003470736.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448433.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2574 chr17 HAVANA exon 75762704 75763439 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592494.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-004"; exon_number 3; exon_id "ENSE00002915286.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448433.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2575 chr17 HAVANA exon 75758591 75758599 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000592494.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-004"; exon_number 4; exon_id "ENSE00002952479.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448433.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2576 chr17 HAVANA transcript 75762758 75765192 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2577 chr17 HAVANA exon 75764972 75765192 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 1; exon_id "ENSE00001303886.3"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2578 chr17 HAVANA CDS 75764972 75765136 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 1; exon_id "ENSE00001303886.3"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2579 chr17 HAVANA start_codon 75765134 75765136 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 1; exon_id "ENSE00001303886.3"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2580 chr17 HAVANA exon 75763897 75764086 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 2; exon_id "ENSE00003624195.1"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2581 chr17 HAVANA CDS 75763897 75764086 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 2; exon_id "ENSE00003624195.1"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2582 chr17 HAVANA exon 75763581 75763667 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 3; exon_id "ENSE00002739267.1"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2583 chr17 HAVANA CDS 75763663 75763667 . - 2 gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 3; exon_id "ENSE00002739267.1"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2584 chr17 HAVANA stop_codon 75763660 75763662 . - 0 gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 3; exon_id "ENSE00002739267.1"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2585 chr17 HAVANA exon 75762758 75763439 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 4; exon_id "ENSE00002745130.1"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2586 chr17 HAVANA UTR 75765137 75765192 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 1; exon_id "ENSE00001303886.3"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2587 chr17 HAVANA UTR 75763581 75763662 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 3; exon_id "ENSE00002739267.1"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2588 chr17 HAVANA UTR 75762758 75763439 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000586244.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "GALK1-003"; exon_number 4; exon_id "ENSE00002745130.1"; level 2; protein_id "ENSP00000468288.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448434.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2589 chr17 HAVANA transcript 75763383 75765133 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000589030.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-005"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448435.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2590 chr17 HAVANA exon 75764972 75765133 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000589030.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-005"; exon_number 1; exon_id "ENSE00002949383.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448435.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2591 chr17 HAVANA exon 75763383 75764086 . - . gene_id "ENSG00000108479.11"; transcript_id "ENST00000589030.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "GALK1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "GALK1-005"; exon_number 2; exon_id "ENSE00002926617.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000179832.1"; havana_transcript "OTTHUMT00000448435.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2592 chr6 HAVANA transcript 41228324 41238382 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2593 chr6 HAVANA exon 41228324 41228490 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 1; exon_id "ENSE00001417288.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2594 chr6 HAVANA CDS 41228428 41228490 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 1; exon_id "ENSE00001417288.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2595 chr6 HAVANA start_codon 41228428 41228430 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 1; exon_id "ENSE00001417288.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2596 chr6 HAVANA exon 41228714 41229044 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 2; exon_id "ENSE00001379965.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2597 chr6 HAVANA CDS 41228714 41229044 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 2; exon_id "ENSE00001379965.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2598 chr6 HAVANA exon 41229521 41229571 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 3; exon_id "ENSE00002488005.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2599 chr6 HAVANA CDS 41229521 41229571 . + 2 gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 3; exon_id "ENSE00002488005.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2600 chr6 HAVANA exon 41230062 41230122 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 4; exon_id "ENSE00001366062.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2601 chr6 HAVANA CDS 41230062 41230122 . + 2 gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 4; exon_id "ENSE00001366062.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2602 chr6 HAVANA exon 41236486 41236617 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 5; exon_id "ENSE00003528113.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2603 chr6 HAVANA CDS 41236486 41236579 . + 1 gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 5; exon_id "ENSE00003528113.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2604 chr6 HAVANA stop_codon 41236580 41236582 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 5; exon_id "ENSE00003528113.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2605 chr6 HAVANA exon 41237055 41238382 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 6; exon_id "ENSE00001921430.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2606 chr6 HAVANA UTR 41228324 41228427 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 1; exon_id "ENSE00001417288.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2607 chr6 HAVANA UTR 41236580 41236617 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 5; exon_id "ENSE00003528113.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2608 chr6 HAVANA UTR 41237055 41238382 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000341495.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-001"; exon_number 6; exon_id "ENSE00001921430.1"; level 2; protein_id "ENSP00000342570.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000043873.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2609 chr6 HAVANA transcript 41228339 41237100 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2610 chr6 HAVANA exon 41228339 41228490 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 1; exon_id "ENSE00001937743.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2611 chr6 HAVANA CDS 41228428 41228490 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 1; exon_id "ENSE00001937743.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2612 chr6 HAVANA start_codon 41228428 41228430 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 1; exon_id "ENSE00001937743.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2613 chr6 HAVANA exon 41228714 41229044 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 2; exon_id "ENSE00001379965.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2614 chr6 HAVANA CDS 41228714 41229044 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 2; exon_id "ENSE00001379965.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2615 chr6 HAVANA exon 41229521 41229571 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 3; exon_id "ENSE00002488005.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2616 chr6 HAVANA CDS 41229521 41229571 . + 2 gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 3; exon_id "ENSE00002488005.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2617 chr6 HAVANA exon 41230062 41230122 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 4; exon_id "ENSE00001366062.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2618 chr6 HAVANA CDS 41230062 41230122 . + 2 gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 4; exon_id "ENSE00001366062.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2619 chr6 HAVANA exon 41236486 41236617 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 5; exon_id "ENSE00003528113.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2620 chr6 HAVANA CDS 41236486 41236579 . + 1 gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 5; exon_id "ENSE00003528113.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2621 chr6 HAVANA stop_codon 41236580 41236582 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 5; exon_id "ENSE00003528113.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2622 chr6 HAVANA exon 41237060 41237100 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 6; exon_id "ENSE00001828066.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2623 chr6 HAVANA UTR 41228339 41228427 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 1; exon_id "ENSE00001937743.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2624 chr6 HAVANA UTR 41236580 41236617 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 5; exon_id "ENSE00003528113.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2625 chr6 HAVANA UTR 41237060 41237100 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000448827.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "TREML4-002"; exon_number 6; exon_id "ENSE00001828066.1"; level 2; protein_id "ENSP00000418078.1"; tag "alternative_5_UTR"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS34446.1"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357834.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2626 chr6 HAVANA transcript 41228955 41238882 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2627 chr6 HAVANA exon 41228955 41229044 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 1; exon_id "ENSE00001942161.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2628 chr6 HAVANA CDS 41228955 41229044 . + 2 gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 1; exon_id "ENSE00001942161.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2629 chr6 HAVANA exon 41229521 41229571 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 2; exon_id "ENSE00002488005.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2630 chr6 HAVANA CDS 41229521 41229571 . + 2 gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 2; exon_id "ENSE00002488005.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2631 chr6 HAVANA exon 41230062 41230122 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 3; exon_id "ENSE00001366062.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2632 chr6 HAVANA CDS 41230062 41230122 . + 2 gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 3; exon_id "ENSE00001366062.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2633 chr6 HAVANA exon 41232363 41232504 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 4; exon_id "ENSE00001863320.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2634 chr6 HAVANA CDS 41232363 41232372 . + 1 gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 4; exon_id "ENSE00001863320.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2635 chr6 HAVANA stop_codon 41232373 41232375 . + 0 gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 4; exon_id "ENSE00001863320.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2636 chr6 HAVANA exon 41236486 41236617 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 5; exon_id "ENSE00003633757.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2637 chr6 HAVANA exon 41237055 41238882 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 6; exon_id "ENSE00001871201.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2638 chr6 HAVANA UTR 41232373 41232504 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 4; exon_id "ENSE00001863320.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2639 chr6 HAVANA UTR 41236486 41236617 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 5; exon_id "ENSE00003633757.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2640 chr6 HAVANA UTR 41237055 41238882 . + . gene_id "ENSG00000188056.11"; transcript_id "ENST00000461240.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "TREML4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "TREML4-003"; exon_number 6; exon_id "ENSE00001871201.1"; level 2; protein_id "ENSP00000418480.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016408.2"; havana_transcript "OTTHUMT00000357835.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2641 chr8 HAVANA transcript 42896932 43030539 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2642 chr8 HAVANA exon 42896932 42897188 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 1; exon_id "ENSE00001238789.4"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2643 chr8 HAVANA CDS 42897132 42897188 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 1; exon_id "ENSE00001238789.4"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2644 chr8 HAVANA start_codon 42897132 42897134 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 1; exon_id "ENSE00001238789.4"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2645 chr8 HAVANA exon 42906173 42906258 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 2; exon_id "ENSE00003534894.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2646 chr8 HAVANA CDS 42906173 42906258 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 2; exon_id "ENSE00003534894.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2647 chr8 HAVANA exon 42925557 42925629 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 3; exon_id "ENSE00003559929.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2648 chr8 HAVANA CDS 42925557 42925629 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 3; exon_id "ENSE00003559929.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2649 chr8 HAVANA exon 42930122 42930172 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 4; exon_id "ENSE00003539137.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2650 chr8 HAVANA CDS 42930122 42930172 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 4; exon_id "ENSE00003539137.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2651 chr8 HAVANA exon 42943313 42943445 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 5; exon_id "ENSE00003495820.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2652 chr8 HAVANA CDS 42943313 42943445 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 5; exon_id "ENSE00003495820.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2653 chr8 HAVANA exon 42950388 42950455 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 6; exon_id "ENSE00003477199.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2654 chr8 HAVANA CDS 42950388 42950455 . + 2 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 6; exon_id "ENSE00003477199.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2655 chr8 HAVANA exon 42957094 42957156 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 7; exon_id "ENSE00003540075.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2656 chr8 HAVANA CDS 42957094 42957156 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 7; exon_id "ENSE00003540075.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2657 chr8 HAVANA exon 42959231 42959314 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 8; exon_id "ENSE00003579306.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2658 chr8 HAVANA CDS 42959231 42959314 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 8; exon_id "ENSE00003579306.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2659 chr8 HAVANA exon 42964311 42964474 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 9; exon_id "ENSE00003548253.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2660 chr8 HAVANA CDS 42964311 42964474 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 9; exon_id "ENSE00003548253.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2661 chr8 HAVANA exon 42966473 42966613 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 10; exon_id "ENSE00003510268.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2662 chr8 HAVANA CDS 42966473 42966613 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 10; exon_id "ENSE00003510268.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2663 chr8 HAVANA exon 42968013 42968214 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 11; exon_id "ENSE00003485179.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2664 chr8 HAVANA CDS 42968013 42968214 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 11; exon_id "ENSE00003485179.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2665 chr8 HAVANA exon 42973289 42973399 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 12; exon_id "ENSE00003691227.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2666 chr8 HAVANA CDS 42973289 42973399 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 12; exon_id "ENSE00003691227.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2667 chr8 HAVANA exon 42974107 42974194 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 13; exon_id "ENSE00003496198.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2668 chr8 HAVANA CDS 42974107 42974194 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 13; exon_id "ENSE00003496198.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2669 chr8 HAVANA exon 42982627 42982696 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 14; exon_id "ENSE00003574436.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2670 chr8 HAVANA CDS 42982627 42982696 . + 2 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 14; exon_id "ENSE00003574436.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2671 chr8 HAVANA exon 42986655 42986795 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 15; exon_id "ENSE00003541251.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2672 chr8 HAVANA CDS 42986655 42986795 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 15; exon_id "ENSE00003541251.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2673 chr8 HAVANA exon 42997550 42997637 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 16; exon_id "ENSE00003472585.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2674 chr8 HAVANA CDS 42997550 42997637 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 16; exon_id "ENSE00003472585.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2675 chr8 HAVANA exon 43002107 43002141 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 17; exon_id "ENSE00003596662.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2676 chr8 HAVANA CDS 43002107 43002141 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 17; exon_id "ENSE00003596662.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2677 chr8 HAVANA exon 43007847 43007929 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 18; exon_id "ENSE00003502575.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2678 chr8 HAVANA CDS 43007847 43007929 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 18; exon_id "ENSE00003502575.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2679 chr8 HAVANA exon 43010305 43010405 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 19; exon_id "ENSE00003582718.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2680 chr8 HAVANA CDS 43010305 43010405 . + 2 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 19; exon_id "ENSE00003582718.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2681 chr8 HAVANA exon 43013051 43013155 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 20; exon_id "ENSE00001170688.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2682 chr8 HAVANA CDS 43013051 43013155 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 20; exon_id "ENSE00001170688.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2683 chr8 HAVANA exon 43013329 43013400 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 21; exon_id "ENSE00001170681.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2684 chr8 HAVANA CDS 43013329 43013400 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 21; exon_id "ENSE00001170681.1"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2685 chr8 HAVANA exon 43018358 43030539 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 22; exon_id "ENSE00001238780.6"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2686 chr8 HAVANA CDS 43018358 43018495 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 22; exon_id "ENSE00001238780.6"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2687 chr8 HAVANA stop_codon 43018496 43018498 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 22; exon_id "ENSE00001238780.6"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2688 chr8 HAVANA UTR 42896932 42897131 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 1; exon_id "ENSE00001238789.4"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2689 chr8 HAVANA UTR 43018496 43030539 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000307602.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-001"; exon_number 22; exon_id "ENSE00001238780.6"; level 2; protein_id "ENSP00000305699.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS6139.1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383172.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2690 chr8 HAVANA transcript 42896946 42998156 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2691 chr8 HAVANA exon 42896946 42897188 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 1; exon_id "ENSE00002140259.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2692 chr8 HAVANA exon 42906173 42906258 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 2; exon_id "ENSE00003587171.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2693 chr8 HAVANA exon 42925557 42925629 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 3; exon_id "ENSE00003579667.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2694 chr8 HAVANA exon 42930122 42930172 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 4; exon_id "ENSE00003575044.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2695 chr8 HAVANA exon 42943313 42943445 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 5; exon_id "ENSE00003486824.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2696 chr8 HAVANA exon 42950388 42950455 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 6; exon_id "ENSE00003670372.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2697 chr8 HAVANA exon 42957094 42957156 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 7; exon_id "ENSE00003598915.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2698 chr8 HAVANA exon 42959231 42959314 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 8; exon_id "ENSE00003545421.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2699 chr8 HAVANA exon 42964311 42964474 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 9; exon_id "ENSE00003467663.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2700 chr8 HAVANA exon 42966473 42966613 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 10; exon_id "ENSE00003593298.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2701 chr8 HAVANA exon 42968013 42968214 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 11; exon_id "ENSE00003535736.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2702 chr8 HAVANA exon 42973289 42973399 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 12; exon_id "ENSE00003532327.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2703 chr8 HAVANA exon 42974107 42974194 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 13; exon_id "ENSE00003558817.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2704 chr8 HAVANA exon 42982627 42982696 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 14; exon_id "ENSE00003496784.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2705 chr8 HAVANA exon 42986655 42986795 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 15; exon_id "ENSE00003461201.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2706 chr8 HAVANA exon 42997550 42998156 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000527306.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "HOOK3-002"; exon_number 16; exon_id "ENSE00002182321.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383173.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2707 chr8 HAVANA transcript 42974117 43010348 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2708 chr8 HAVANA exon 42974117 42974194 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 1; exon_id "ENSE00002163637.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2709 chr8 HAVANA CDS 42974117 42974194 . + 2 gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 1; exon_id "ENSE00002163637.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2710 chr8 HAVANA exon 42982627 42982696 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 2; exon_id "ENSE00003574436.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2711 chr8 HAVANA CDS 42982627 42982696 . + 2 gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 2; exon_id "ENSE00003574436.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2712 chr8 HAVANA exon 42986655 42986795 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 3; exon_id "ENSE00003541251.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2713 chr8 HAVANA CDS 42986655 42986795 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 3; exon_id "ENSE00003541251.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2714 chr8 HAVANA exon 42994434 42994492 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 4; exon_id "ENSE00002152451.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2715 chr8 HAVANA CDS 42994434 42994446 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 4; exon_id "ENSE00002152451.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2716 chr8 HAVANA stop_codon 42994447 42994449 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 4; exon_id "ENSE00002152451.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2717 chr8 HAVANA exon 42997550 42997637 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 5; exon_id "ENSE00003578460.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2718 chr8 HAVANA exon 43002107 43002141 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 6; exon_id "ENSE00003694115.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2719 chr8 HAVANA exon 43007847 43007929 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 7; exon_id "ENSE00003666250.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2720 chr8 HAVANA exon 43010305 43010348 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 8; exon_id "ENSE00002184142.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2721 chr8 HAVANA UTR 42994447 42994492 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 4; exon_id "ENSE00002152451.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2722 chr8 HAVANA UTR 42997550 42997637 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 5; exon_id "ENSE00003578460.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2723 chr8 HAVANA UTR 43002107 43002141 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 6; exon_id "ENSE00003694115.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2724 chr8 HAVANA UTR 43007847 43007929 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 7; exon_id "ENSE00003666250.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2725 chr8 HAVANA UTR 43010305 43010348 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000526882.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "HOOK3-003"; exon_number 8; exon_id "ENSE00002184142.1"; level 2; protein_id "ENSP00000435077.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383174.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2726 chr8 HAVANA transcript 42997590 43018392 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2727 chr8 HAVANA exon 42997590 42997637 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 1; exon_id "ENSE00002189289.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2728 chr8 HAVANA CDS 42997590 42997637 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 1; exon_id "ENSE00002189289.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2729 chr8 HAVANA exon 43000271 43000276 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 2; exon_id "ENSE00002186967.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2730 chr8 HAVANA CDS 43000271 43000276 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 2; exon_id "ENSE00002186967.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2731 chr8 HAVANA exon 43002107 43002141 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 3; exon_id "ENSE00003596662.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2732 chr8 HAVANA CDS 43002107 43002141 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 3; exon_id "ENSE00003596662.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2733 chr8 HAVANA exon 43007847 43007929 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 4; exon_id "ENSE00003502575.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2734 chr8 HAVANA CDS 43007847 43007929 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 4; exon_id "ENSE00003502575.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2735 chr8 HAVANA exon 43010305 43010405 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 5; exon_id "ENSE00003582718.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2736 chr8 HAVANA CDS 43010305 43010405 . + 2 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 5; exon_id "ENSE00003582718.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2737 chr8 HAVANA exon 43013051 43013155 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 6; exon_id "ENSE00001170688.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2738 chr8 HAVANA CDS 43013051 43013155 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 6; exon_id "ENSE00001170688.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2739 chr8 HAVANA exon 43013329 43013400 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 7; exon_id "ENSE00001170681.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2740 chr8 HAVANA CDS 43013329 43013400 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 7; exon_id "ENSE00001170681.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2741 chr8 HAVANA exon 43018358 43018392 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 8; exon_id "ENSE00002172939.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2742 chr8 HAVANA CDS 43018358 43018392 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533539.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-005"; exon_number 8; exon_id "ENSE00002172939.1"; level 2; protein_id "ENSP00000433953.1"; tag "mRNA_start_NF"; tag "mRNA_end_NF"; tag "cds_start_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383175.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2743 chr8 HAVANA transcript 43000819 43013121 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000524839.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HOOK3-004"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2744 chr8 HAVANA exon 43000819 43001086 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000524839.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HOOK3-004"; exon_number 1; exon_id "ENSE00002196273.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2745 chr8 HAVANA exon 43002107 43002141 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000524839.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HOOK3-004"; exon_number 2; exon_id "ENSE00003694115.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2746 chr8 HAVANA exon 43007847 43007929 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000524839.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HOOK3-004"; exon_number 3; exon_id "ENSE00003666250.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2747 chr8 HAVANA exon 43010305 43010405 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000524839.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HOOK3-004"; exon_number 4; exon_id "ENSE00003476163.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2748 chr8 HAVANA exon 43013051 43013121 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000524839.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "HOOK3-004"; exon_number 5; exon_id "ENSE00002151465.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2749 chr8 HAVANA transcript 43018405 43028112 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533338.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-006"; level 1; protein_id "ENSP00000433813.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383237.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2750 chr8 HAVANA exon 43018405 43018494 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533338.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-006"; exon_number 1; exon_id "ENSE00002179380.1"; level 1; protein_id "ENSP00000433813.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383237.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2751 chr8 HAVANA CDS 43018405 43018494 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533338.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-006"; exon_number 1; exon_id "ENSE00002179380.1"; level 1; protein_id "ENSP00000433813.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383237.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2752 chr8 HAVANA exon 43027429 43028112 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533338.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-006"; exon_number 2; exon_id "ENSE00002163736.1"; level 1; protein_id "ENSP00000433813.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383237.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2753 chr8 HAVANA CDS 43027429 43027429 . + 1 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533338.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-006"; exon_number 2; exon_id "ENSE00002163736.1"; level 1; protein_id "ENSP00000433813.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383237.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2754 chr8 HAVANA stop_codon 43027430 43027432 . + 0 gene_id "ENSG00000168172.8"; transcript_id "ENST00000533338.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-006"; exon_number 2; exon_id "ENSE00002163736.1"; level 1; protein_id "ENSP00000433813.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383237.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2755 chr8 HAVANA UTR 43027430 43028112 . + . gene_id "ENSG00000168172.8"; transcript_id "ENST00000533338.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "HOOK3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "HOOK3-006"; exon_number 2; exon_id "ENSE00002163736.1"; level 1; protein_id "ENSP00000433813.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; tag "exp_conf"; havana_gene "OTTHUMG00000165278.4"; havana_transcript "OTTHUMT00000383237.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2756 chr19 HAVANA transcript 36009120 36014222 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000495116.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH6-007"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309007.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2757 chr19 HAVANA exon 36014175 36014222 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000495116.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH6-007"; exon_number 1; exon_id "ENSE00001882923.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309007.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2758 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000495116.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH6-007"; exon_number 2; exon_id "ENSE00003600374.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309007.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2759 chr19 HAVANA exon 36010567 36010645 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000495116.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH6-007"; exon_number 3; exon_id "ENSE00003626980.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309007.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2760 chr19 HAVANA exon 36009120 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000495116.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH6-007"; exon_number 4; exon_id "ENSE00002743128.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309007.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2761 chr19 HAVANA transcript 36009121 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2762 chr19 HAVANA exon 36013310 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 1; exon_id "ENSE00001881143.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2763 chr19 HAVANA CDS 36013310 36013422 . - 1 gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 1; exon_id "ENSE00001881143.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2764 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 2; exon_id "ENSE00003517677.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2765 chr19 HAVANA CDS 36013064 36013089 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 2; exon_id "ENSE00003517677.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2766 chr19 HAVANA stop_codon 36013061 36013063 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 2; exon_id "ENSE00003517677.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2767 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 3; exon_id "ENSE00003494404.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2768 chr19 HAVANA exon 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 4; exon_id "ENSE00003667327.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2769 chr19 HAVANA exon 36009121 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 5; exon_id "ENSE00001833310.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2770 chr19 HAVANA UTR 36013021 36013063 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 2; exon_id "ENSE00003517677.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2771 chr19 HAVANA UTR 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 3; exon_id "ENSE00003494404.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2772 chr19 HAVANA UTR 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 4; exon_id "ENSE00003667327.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2773 chr19 HAVANA UTR 36009121 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000461668.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-017"; exon_number 5; exon_id "ENSE00001833310.1"; level 2; protein_id "ENSP00000433885.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309017.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2774 chr19 HAVANA transcript 36009121 36014183 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2775 chr19 HAVANA exon 36014175 36014183 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 1; exon_id "ENSE00002436178.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2776 chr19 HAVANA CDS 36014175 36014183 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 1; exon_id "ENSE00002436178.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2777 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 2; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2778 chr19 HAVANA CDS 36013021 36013089 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 2; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2779 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 3; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2780 chr19 HAVANA CDS 36011404 36011464 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 3; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2781 chr19 HAVANA exon 36010894 36011065 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 4; exon_id "ENSE00001918072.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2782 chr19 HAVANA CDS 36010926 36011065 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 4; exon_id "ENSE00001918072.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2783 chr19 HAVANA stop_codon 36010923 36010925 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 4; exon_id "ENSE00001918072.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2784 chr19 HAVANA exon 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 5; exon_id "ENSE00003667327.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2785 chr19 HAVANA exon 36009121 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 6; exon_id "ENSE00001833310.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2786 chr19 HAVANA UTR 36010894 36010925 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 4; exon_id "ENSE00001918072.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2787 chr19 HAVANA UTR 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 5; exon_id "ENSE00003667327.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2788 chr19 HAVANA UTR 36009121 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490483.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-015"; exon_number 6; exon_id "ENSE00001833310.1"; level 2; protein_id "ENSP00000433156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309015.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2789 chr19 HAVANA transcript 36009121 36014208 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2790 chr19 HAVANA exon 36014175 36014208 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 1; exon_id "ENSE00001917078.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2791 chr19 HAVANA CDS 36014175 36014208 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 1; exon_id "ENSE00001917078.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2792 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 2; exon_id "ENSE00003485536.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2793 chr19 HAVANA CDS 36013344 36013422 . - 1 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 2; exon_id "ENSE00003485536.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2794 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 3; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2795 chr19 HAVANA CDS 36013021 36013089 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 3; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2796 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 4; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2797 chr19 HAVANA CDS 36011404 36011464 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 4; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2798 chr19 HAVANA exon 36010894 36011077 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 5; exon_id "ENSE00003463189.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2799 chr19 HAVANA CDS 36010926 36011077 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 5; exon_id "ENSE00003463189.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2800 chr19 HAVANA stop_codon 36010923 36010925 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 5; exon_id "ENSE00003463189.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2801 chr19 HAVANA exon 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 6; exon_id "ENSE00003667327.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2802 chr19 HAVANA exon 36009121 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 7; exon_id "ENSE00001833310.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2803 chr19 HAVANA UTR 36010894 36010925 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 5; exon_id "ENSE00003463189.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2804 chr19 HAVANA UTR 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 6; exon_id "ENSE00003667327.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2805 chr19 HAVANA UTR 36009121 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000490986.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-005"; exon_number 7; exon_id "ENSE00001833310.1"; level 2; protein_id "ENSP00000435496.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2806 chr19 HAVANA transcript 36009122 36014212 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000471323.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-002"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109532.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2807 chr19 HAVANA exon 36014175 36014212 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000471323.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-002"; exon_number 1; exon_id "ENSE00001879272.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109532.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2808 chr19 HAVANA exon 36010567 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000471323.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-002"; exon_number 2; exon_id "ENSE00001892480.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109532.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2809 chr19 HAVANA exon 36009122 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000471323.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-002"; exon_number 3; exon_id "ENSE00001905617.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109532.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2810 chr19 HAVANA transcript 36009124 36014237 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2811 chr19 HAVANA exon 36013514 36014237 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 1; exon_id "ENSE00001896813.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2812 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 2; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2813 chr19 HAVANA CDS 36013344 36013397 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 2; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2814 chr19 HAVANA start_codon 36013395 36013397 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 2; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2815 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 3; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2816 chr19 HAVANA CDS 36011404 36011464 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 3; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2817 chr19 HAVANA exon 36010894 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 4; exon_id "ENSE00003642798.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2818 chr19 HAVANA CDS 36010894 36011045 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 4; exon_id "ENSE00003642798.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2819 chr19 HAVANA exon 36010567 36010645 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 5; exon_id "ENSE00003636304.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2820 chr19 HAVANA CDS 36010583 36010645 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 5; exon_id "ENSE00003636304.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2821 chr19 HAVANA stop_codon 36010580 36010582 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 5; exon_id "ENSE00003636304.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2822 chr19 HAVANA exon 36009124 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 6; exon_id "ENSE00003601118.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2823 chr19 HAVANA UTR 36013514 36014237 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 1; exon_id "ENSE00001896813.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2824 chr19 HAVANA UTR 36013398 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 2; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2825 chr19 HAVANA UTR 36010567 36010582 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 5; exon_id "ENSE00003636304.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2826 chr19 HAVANA UTR 36009124 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000486389.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-006"; exon_number 6; exon_id "ENSE00003601118.1"; level 2; protein_id "ENSP00000474158.1"; tag "basic"; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000280529.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2827 chr19 HAVANA transcript 36009124 36014239 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2828 chr19 HAVANA exon 36014175 36014239 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 1; exon_id "ENSE00003661233.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2829 chr19 HAVANA CDS 36014175 36014233 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 1; exon_id "ENSE00003661233.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2830 chr19 HAVANA start_codon 36014231 36014233 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 1; exon_id "ENSE00003661233.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2831 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 2; exon_id "ENSE00003485536.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2832 chr19 HAVANA CDS 36013344 36013422 . - 1 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 2; exon_id "ENSE00003485536.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2833 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 3; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2834 chr19 HAVANA CDS 36013021 36013089 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 3; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2835 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 4; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2836 chr19 HAVANA CDS 36011404 36011464 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 4; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2837 chr19 HAVANA exon 36010894 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 5; exon_id "ENSE00003642798.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2838 chr19 HAVANA CDS 36010894 36011045 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 5; exon_id "ENSE00003642798.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2839 chr19 HAVANA exon 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 6; exon_id "ENSE00003656549.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2840 chr19 HAVANA CDS 36010567 36010683 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 6; exon_id "ENSE00003656549.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2841 chr19 HAVANA exon 36009124 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 7; exon_id "ENSE00003541472.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2842 chr19 HAVANA CDS 36009293 36009553 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 7; exon_id "ENSE00003541472.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2843 chr19 HAVANA stop_codon 36009290 36009292 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 7; exon_id "ENSE00003541472.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2844 chr19 HAVANA UTR 36014234 36014239 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 1; exon_id "ENSE00003661233.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2845 chr19 HAVANA UTR 36009124 36009292 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000378875.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-003"; exon_number 7; exon_id "ENSE00003541472.1"; level 2; protein_id "ENSP00000368152.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS12485.2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109530.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2846 chr19 HAVANA transcript 36009175 36014239 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2847 chr19 HAVANA exon 36014175 36014239 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 1; exon_id "ENSE00003527487.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2848 chr19 HAVANA exon 36013514 36013588 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 2; exon_id "ENSE00001825331.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2849 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 3; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2850 chr19 HAVANA CDS 36013344 36013397 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 3; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2851 chr19 HAVANA start_codon 36013395 36013397 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 3; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2852 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 4; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2853 chr19 HAVANA CDS 36013021 36013089 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 4; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2854 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 5; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2855 chr19 HAVANA CDS 36011404 36011464 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 5; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2856 chr19 HAVANA exon 36010894 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 6; exon_id "ENSE00003642798.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2857 chr19 HAVANA CDS 36010894 36011045 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 6; exon_id "ENSE00003642798.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2858 chr19 HAVANA exon 36010567 36010645 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 7; exon_id "ENSE00003636304.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2859 chr19 HAVANA CDS 36010583 36010645 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 7; exon_id "ENSE00003636304.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2860 chr19 HAVANA stop_codon 36010580 36010582 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 7; exon_id "ENSE00003636304.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2861 chr19 HAVANA exon 36009175 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 8; exon_id "ENSE00001861559.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2862 chr19 HAVANA UTR 36014175 36014239 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 1; exon_id "ENSE00003527487.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2863 chr19 HAVANA UTR 36013514 36013588 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 2; exon_id "ENSE00001825331.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2864 chr19 HAVANA UTR 36013398 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 3; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2865 chr19 HAVANA UTR 36010567 36010582 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 7; exon_id "ENSE00003636304.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2866 chr19 HAVANA UTR 36009175 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000485128.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-008"; exon_number 8; exon_id "ENSE00001861559.1"; level 2; protein_id "ENSP00000436742.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309008.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2867 chr19 HAVANA transcript 36009205 36014227 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2868 chr19 HAVANA exon 36014175 36014227 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 1; exon_id "ENSE00003648086.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2869 chr19 HAVANA exon 36013514 36013588 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 2; exon_id "ENSE00001825331.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2870 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 3; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2871 chr19 HAVANA CDS 36013344 36013397 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 3; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2872 chr19 HAVANA start_codon 36013395 36013397 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 3; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2873 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 4; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2874 chr19 HAVANA CDS 36013021 36013089 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 4; exon_id "ENSE00003621392.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2875 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 5; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2876 chr19 HAVANA CDS 36011404 36011464 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 5; exon_id "ENSE00003462132.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2877 chr19 HAVANA exon 36010894 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 6; exon_id "ENSE00003642798.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2878 chr19 HAVANA CDS 36010894 36011045 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 6; exon_id "ENSE00003642798.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2879 chr19 HAVANA exon 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 7; exon_id "ENSE00003656549.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2880 chr19 HAVANA CDS 36010567 36010683 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 7; exon_id "ENSE00003656549.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2881 chr19 HAVANA exon 36009205 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 8; exon_id "ENSE00000895621.3"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2882 chr19 HAVANA CDS 36009293 36009553 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 8; exon_id "ENSE00000895621.3"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2883 chr19 HAVANA stop_codon 36009290 36009292 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 8; exon_id "ENSE00000895621.3"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2884 chr19 HAVANA UTR 36014175 36014227 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 1; exon_id "ENSE00003648086.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2885 chr19 HAVANA UTR 36013514 36013588 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 2; exon_id "ENSE00001825331.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2886 chr19 HAVANA UTR 36013398 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 3; exon_id "ENSE00003532377.1"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2887 chr19 HAVANA UTR 36009205 36009292 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000252984.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH6-004"; exon_number 8; exon_id "ENSE00000895621.3"; level 2; protein_id "ENSP00000252984.6"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS74342.1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109531.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2888 chr19 HAVANA transcript 36009282 36014190 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2889 chr19 HAVANA exon 36014175 36014190 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 1; exon_id "ENSE00002499268.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2890 chr19 HAVANA CDS 36014175 36014190 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 1; exon_id "ENSE00002499268.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2891 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 2; exon_id "ENSE00003485536.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2892 chr19 HAVANA CDS 36013344 36013422 . - 1 gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 2; exon_id "ENSE00003485536.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2893 chr19 HAVANA exon 36013001 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 3; exon_id "ENSE00001934503.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2894 chr19 HAVANA CDS 36013001 36013089 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 3; exon_id "ENSE00001934503.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2895 chr19 HAVANA exon 36010894 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 4; exon_id "ENSE00003504337.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2896 chr19 HAVANA CDS 36011015 36011045 . - 1 gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 4; exon_id "ENSE00003504337.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2897 chr19 HAVANA stop_codon 36011012 36011014 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 4; exon_id "ENSE00003504337.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2898 chr19 HAVANA exon 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 5; exon_id "ENSE00003667327.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2899 chr19 HAVANA exon 36009282 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 6; exon_id "ENSE00001936954.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2900 chr19 HAVANA UTR 36010894 36011014 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 4; exon_id "ENSE00003504337.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2901 chr19 HAVANA UTR 36010567 36010683 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 5; exon_id "ENSE00003667327.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2902 chr19 HAVANA UTR 36009282 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000497999.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-016"; exon_number 6; exon_id "ENSE00001936954.1"; level 2; protein_id "ENSP00000436156.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309016.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2903 chr19 HAVANA transcript 36009461 36013303 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000462793.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-009"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309009.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2904 chr19 HAVANA exon 36013021 36013303 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000462793.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-009"; exon_number 1; exon_id "ENSE00001902903.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309009.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2905 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000462793.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-009"; exon_number 2; exon_id "ENSE00003494404.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309009.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2906 chr19 HAVANA exon 36010894 36011077 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000462793.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-009"; exon_number 3; exon_id "ENSE00003531332.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309009.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2907 chr19 HAVANA exon 36010567 36010645 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000462793.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-009"; exon_number 4; exon_id "ENSE00003626980.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309009.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2908 chr19 HAVANA exon 36009461 36009553 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000462793.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-009"; exon_number 5; exon_id "ENSE00001858686.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309009.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2909 chr19 HAVANA transcript 36010290 36014213 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000392183.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-019"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000362428.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2910 chr19 HAVANA exon 36014175 36014213 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000392183.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-019"; exon_number 1; exon_id "ENSE00001946374.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000362428.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2911 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000392183.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-019"; exon_number 2; exon_id "ENSE00003572033.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000362428.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2912 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000392183.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-019"; exon_number 3; exon_id "ENSE00003600374.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000362428.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2913 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000392183.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-019"; exon_number 4; exon_id "ENSE00003494404.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000362428.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2914 chr19 HAVANA exon 36010290 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000392183.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-019"; exon_number 5; exon_id "ENSE00002081088.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000362428.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2915 chr19 HAVANA transcript 36010544 36013588 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000468004.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-013"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309013.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2916 chr19 HAVANA exon 36013514 36013588 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000468004.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-013"; exon_number 1; exon_id "ENSE00001825331.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309013.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2917 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000468004.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-013"; exon_number 2; exon_id "ENSE00003572033.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309013.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2918 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000468004.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-013"; exon_number 3; exon_id "ENSE00003600374.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309013.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2919 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000468004.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-013"; exon_number 4; exon_id "ENSE00003494404.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309013.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2920 chr19 HAVANA exon 36010544 36011077 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000468004.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-013"; exon_number 5; exon_id "ENSE00001863322.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309013.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2921 chr19 HAVANA transcript 36010636 36014202 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2922 chr19 HAVANA exon 36014175 36014202 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 1; exon_id "ENSE00001834802.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2923 chr19 HAVANA CDS 36014175 36014202 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 1; exon_id "ENSE00001834802.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2924 chr19 HAVANA exon 36013328 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 2; exon_id "ENSE00001884961.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2925 chr19 HAVANA CDS 36013328 36013422 . - 1 gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 2; exon_id "ENSE00001884961.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2926 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 3; exon_id "ENSE00003517677.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2927 chr19 HAVANA CDS 36013064 36013089 . - 2 gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 3; exon_id "ENSE00003517677.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2928 chr19 HAVANA stop_codon 36013061 36013063 . - 0 gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 3; exon_id "ENSE00003517677.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2929 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 4; exon_id "ENSE00003494404.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2930 chr19 HAVANA exon 36010894 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 5; exon_id "ENSE00003571229.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2931 chr19 HAVANA exon 36010636 36010783 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 6; exon_id "ENSE00001847156.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2932 chr19 HAVANA UTR 36013021 36013063 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 3; exon_id "ENSE00003517677.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2933 chr19 HAVANA UTR 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 4; exon_id "ENSE00003494404.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2934 chr19 HAVANA UTR 36010894 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 5; exon_id "ENSE00003571229.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2935 chr19 HAVANA UTR 36010636 36010783 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000481257.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH6-014"; exon_number 6; exon_id "ENSE00001847156.1"; level 2; protein_id "ENSP00000433085.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309014.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2936 chr19 HAVANA transcript 36010738 36014213 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000466196.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-011"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309011.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2937 chr19 HAVANA exon 36014175 36014213 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000466196.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-011"; exon_number 1; exon_id "ENSE00001946374.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309011.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2938 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000466196.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-011"; exon_number 2; exon_id "ENSE00003572033.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309011.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2939 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000466196.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-011"; exon_number 3; exon_id "ENSE00003600374.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309011.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2940 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000466196.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-011"; exon_number 4; exon_id "ENSE00003494404.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309011.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2941 chr19 HAVANA exon 36010738 36011045 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000466196.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-011"; exon_number 5; exon_id "ENSE00001889463.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309011.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2942 chr19 HAVANA transcript 36010738 36014235 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000475223.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-012"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309012.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2943 chr19 HAVANA exon 36014175 36014235 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000475223.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-012"; exon_number 1; exon_id "ENSE00003686588.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309012.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2944 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000475223.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-012"; exon_number 2; exon_id "ENSE00003572033.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309012.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2945 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000475223.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-012"; exon_number 3; exon_id "ENSE00003600374.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309012.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2946 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000475223.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-012"; exon_number 4; exon_id "ENSE00003494404.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309012.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2947 chr19 HAVANA exon 36010738 36011077 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000475223.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-012"; exon_number 5; exon_id "ENSE00001858945.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000309012.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2948 chr19 HAVANA transcript 36011038 36014199 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000592353.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-021"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000457424.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2949 chr19 HAVANA exon 36014175 36014199 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000592353.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-021"; exon_number 1; exon_id "ENSE00002924721.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000457424.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2950 chr19 HAVANA exon 36013021 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000592353.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-021"; exon_number 2; exon_id "ENSE00002923419.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000457424.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2951 chr19 HAVANA exon 36011404 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000592353.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-021"; exon_number 3; exon_id "ENSE00003494404.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000457424.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2952 chr19 HAVANA exon 36011038 36011077 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000592353.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-021"; exon_number 4; exon_id "ENSE00002851797.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000457424.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2953 chr19 HAVANA transcript 36011180 36014213 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000590666.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-022"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000458121.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2954 chr19 HAVANA exon 36014175 36014213 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000590666.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-022"; exon_number 1; exon_id "ENSE00001946374.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000458121.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2955 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000590666.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-022"; exon_number 2; exon_id "ENSE00003572033.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000458121.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2956 chr19 HAVANA exon 36013021 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000590666.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-022"; exon_number 3; exon_id "ENSE00003600374.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000458121.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2957 chr19 HAVANA exon 36011180 36011464 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000590666.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-022"; exon_number 4; exon_id "ENSE00002929205.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000458121.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2958 chr19 HAVANA transcript 36012543 36014218 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000470859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-001"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2959 chr19 HAVANA exon 36014175 36014218 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000470859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-001"; exon_number 1; exon_id "ENSE00001877501.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2960 chr19 HAVANA exon 36013344 36013422 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000470859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-001"; exon_number 2; exon_id "ENSE00003572033.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2961 chr19 HAVANA exon 36012543 36013089 . - . gene_id "ENSG00000239382.10"; transcript_id "ENST00000470859.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH6"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH6-001"; exon_number 3; exon_id "ENSE00001861915.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000048137.11"; havana_transcript "OTTHUMT00000109528.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2962 chr12 HAVANA transcript 50763710 50814192 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2963 chr12 HAVANA exon 50763710 50763741 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 1; exon_id "ENSE00002376620.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2964 chr12 HAVANA exon 50780140 50780238 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2965 chr12 HAVANA CDS 50780146 50780238 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2966 chr12 HAVANA start_codon 50780146 50780148 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2967 chr12 HAVANA exon 50795909 50796009 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 3; exon_id "ENSE00003683463.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2968 chr12 HAVANA CDS 50795909 50796009 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 3; exon_id "ENSE00003683463.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2969 chr12 HAVANA exon 50809456 50809589 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 4; exon_id "ENSE00000837655.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2970 chr12 HAVANA CDS 50809456 50809589 . + 1 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 4; exon_id "ENSE00000837655.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2971 chr12 HAVANA exon 50814010 50814192 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 5; exon_id "ENSE00003788621.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2972 chr12 HAVANA CDS 50814010 50814192 . + 2 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 5; exon_id "ENSE00003788621.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2973 chr12 HAVANA UTR 50763710 50763741 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 1; exon_id "ENSE00002376620.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2974 chr12 HAVANA UTR 50780140 50780145 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552510.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-003"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448592.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404283.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2975 chr12 HAVANA transcript 50764078 50809475 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2976 chr12 HAVANA exon 50764078 50764307 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 1; exon_id "ENSE00001374993.3"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2977 chr12 HAVANA exon 50780140 50780238 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2978 chr12 HAVANA CDS 50780146 50780238 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2979 chr12 HAVANA start_codon 50780146 50780148 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2980 chr12 HAVANA exon 50788208 50788325 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 3; exon_id "ENSE00002381582.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2981 chr12 HAVANA CDS 50788208 50788325 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 3; exon_id "ENSE00002381582.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2982 chr12 HAVANA exon 50795909 50796009 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 4; exon_id "ENSE00003546956.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2983 chr12 HAVANA CDS 50795909 50795928 . + 2 gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 4; exon_id "ENSE00003546956.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2984 chr12 HAVANA stop_codon 50795929 50795931 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 4; exon_id "ENSE00003546956.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2985 chr12 HAVANA exon 50809456 50809475 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 5; exon_id "ENSE00002339410.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2986 chr12 HAVANA UTR 50764078 50764307 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 1; exon_id "ENSE00001374993.3"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2987 chr12 HAVANA UTR 50780140 50780145 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2988 chr12 HAVANA UTR 50795929 50796009 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 4; exon_id "ENSE00003546956.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2989 chr12 HAVANA UTR 50809456 50809475 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000549612.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-005"; exon_number 5; exon_id "ENSE00002339410.1"; level 2; protein_id "ENSP00000448421.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404284.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2990 chr12 HAVANA transcript 50764292 50821122 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2991 chr12 HAVANA exon 50764292 50764307 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 1; exon_id "ENSE00002391770.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2992 chr12 HAVANA exon 50780140 50780238 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2993 chr12 HAVANA CDS 50780146 50780238 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2994 chr12 HAVANA start_codon 50780146 50780148 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2995 chr12 HAVANA exon 50795909 50796009 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 3; exon_id "ENSE00003683463.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2996 chr12 HAVANA CDS 50795909 50796009 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 3; exon_id "ENSE00003683463.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2997 chr12 HAVANA exon 50809456 50809589 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 4; exon_id "ENSE00000837655.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2998 chr12 HAVANA CDS 50809456 50809589 . + 1 gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 4; exon_id "ENSE00000837655.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
2999 chr12 HAVANA exon 50814010 50814192 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 5; exon_id "ENSE00003788621.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3000 chr12 HAVANA CDS 50814010 50814192 . + 2 gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 5; exon_id "ENSE00003788621.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3001 chr12 HAVANA exon 50814280 50814439 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 6; exon_id "ENSE00003675908.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3002 chr12 HAVANA CDS 50814280 50814439 . + 2 gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 6; exon_id "ENSE00003675908.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3003 chr12 HAVANA exon 50819635 50821122 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 7; exon_id "ENSE00001295868.5"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3004 chr12 HAVANA CDS 50819635 50819776 . + 1 gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 7; exon_id "ENSE00001295868.5"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3005 chr12 HAVANA stop_codon 50819777 50819779 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 7; exon_id "ENSE00001295868.5"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3006 chr12 HAVANA UTR 50764292 50764307 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 1; exon_id "ENSE00002391770.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3007 chr12 HAVANA UTR 50780140 50780145 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3008 chr12 HAVANA UTR 50819777 50821122 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000262053.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-001"; exon_number 7; exon_id "ENSE00001295868.5"; level 2; protein_id "ENSP00000262053.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS8803.1"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404285.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3009 chr12 HAVANA transcript 50764480 50820010 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3010 chr12 HAVANA exon 50764480 50764554 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 1; exon_id "ENSE00002273952.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3011 chr12 HAVANA exon 50775582 50775658 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 2; exon_id "ENSE00002276303.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3012 chr12 HAVANA exon 50780140 50780238 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 3; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3013 chr12 HAVANA CDS 50780146 50780238 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 3; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3014 chr12 HAVANA start_codon 50780146 50780148 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 3; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3015 chr12 HAVANA exon 50814010 50814192 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 4; exon_id "ENSE00003598949.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3016 chr12 HAVANA CDS 50814010 50814081 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 4; exon_id "ENSE00003598949.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3017 chr12 HAVANA stop_codon 50814082 50814084 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 4; exon_id "ENSE00003598949.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3018 chr12 HAVANA exon 50814280 50814439 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 5; exon_id "ENSE00003608345.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3019 chr12 HAVANA exon 50819635 50820010 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 6; exon_id "ENSE00003510574.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3020 chr12 HAVANA UTR 50764480 50764554 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 1; exon_id "ENSE00002273952.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3021 chr12 HAVANA UTR 50775582 50775658 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 2; exon_id "ENSE00002276303.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3022 chr12 HAVANA UTR 50780140 50780145 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 3; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3023 chr12 HAVANA UTR 50814082 50814192 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 4; exon_id "ENSE00003598949.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3024 chr12 HAVANA UTR 50814280 50814439 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 5; exon_id "ENSE00003608345.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3025 chr12 HAVANA UTR 50819635 50820010 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000551831.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ATF1-002"; exon_number 6; exon_id "ENSE00003510574.1"; level 2; protein_id "ENSP00000448987.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404286.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3026 chr12 HAVANA transcript 50764509 50814368 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3027 chr12 HAVANA exon 50764509 50764647 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 1; exon_id "ENSE00002393410.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3028 chr12 HAVANA exon 50780140 50780238 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3029 chr12 HAVANA CDS 50780146 50780238 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3030 chr12 HAVANA start_codon 50780146 50780148 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3031 chr12 HAVANA exon 50795909 50796009 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 3; exon_id "ENSE00003683463.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3032 chr12 HAVANA CDS 50795909 50796009 . + 0 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 3; exon_id "ENSE00003683463.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3033 chr12 HAVANA exon 50809456 50809589 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 4; exon_id "ENSE00000837655.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3034 chr12 HAVANA CDS 50809456 50809589 . + 1 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 4; exon_id "ENSE00000837655.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3035 chr12 HAVANA exon 50814010 50814192 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 5; exon_id "ENSE00003788621.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3036 chr12 HAVANA CDS 50814010 50814192 . + 2 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 5; exon_id "ENSE00003788621.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3037 chr12 HAVANA exon 50814280 50814368 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 6; exon_id "ENSE00002370952.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3038 chr12 HAVANA CDS 50814280 50814368 . + 2 gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 6; exon_id "ENSE00002370952.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3039 chr12 HAVANA UTR 50764509 50764647 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 1; exon_id "ENSE00002393410.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3040 chr12 HAVANA UTR 50780140 50780145 . + . gene_id "ENSG00000123268.8"; transcript_id "ENST00000552487.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ATF1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ATF1-004"; exon_number 2; exon_id "ENSE00003503033.1"; level 2; protein_id "ENSP00000448921.1"; tag "dotter_confirmed"; tag "mRNA_end_NF"; tag "alternative_5_UTR"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000169482.2"; havana_transcript "OTTHUMT00000404287.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3041 chr5 HAVANA transcript 150401637 150412769 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3042 chr5 HAVANA exon 150412625 150412769 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 1; exon_id "ENSE00001549924.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3043 chr5 HAVANA CDS 150412625 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 1; exon_id "ENSE00001549924.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3044 chr5 HAVANA start_codon 150412747 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 1; exon_id "ENSE00001549924.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3045 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3046 chr5 HAVANA CDS 150407152 150407324 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3047 chr5 HAVANA exon 150406881 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3048 chr5 HAVANA CDS 150406881 150406960 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3049 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3050 chr5 HAVANA CDS 150406259 150406321 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3051 chr5 HAVANA exon 150402563 150402625 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 5; exon_id "ENSE00003476049.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3052 chr5 HAVANA CDS 150402587 150402625 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 5; exon_id "ENSE00003476049.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3053 chr5 HAVANA stop_codon 150402584 150402586 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 5; exon_id "ENSE00003476049.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3054 chr5 HAVANA exon 150401637 150402250 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 6; exon_id "ENSE00002125852.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3055 chr5 HAVANA UTR 150412750 150412769 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 1; exon_id "ENSE00001549924.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3056 chr5 HAVANA UTR 150402563 150402586 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 5; exon_id "ENSE00003476049.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3057 chr5 HAVANA UTR 150401637 150402250 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000377795.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-002"; exon_number 6; exon_id "ENSE00002125852.1"; level 2; protein_id "ENSP00000367026.3"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS34276.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374177.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3058 chr5 HAVANA transcript 150401670 150412929 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3059 chr5 HAVANA exon 150412625 150412929 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 1; exon_id "ENSE00002140026.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3060 chr5 HAVANA CDS 150412625 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 1; exon_id "ENSE00002140026.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3061 chr5 HAVANA start_codon 150412747 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 1; exon_id "ENSE00002140026.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3062 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3063 chr5 HAVANA CDS 150407152 150407324 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3064 chr5 HAVANA exon 150406881 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3065 chr5 HAVANA CDS 150406881 150406960 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3066 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3067 chr5 HAVANA CDS 150406259 150406321 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3068 chr5 HAVANA exon 150405085 150405180 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 5; exon_id "ENSE00003578099.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3069 chr5 HAVANA CDS 150405085 150405180 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 5; exon_id "ENSE00003578099.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3070 chr5 HAVANA exon 150404680 150404767 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 6; exon_id "ENSE00000841201.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3071 chr5 HAVANA CDS 150404680 150404767 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 6; exon_id "ENSE00000841201.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3072 chr5 HAVANA exon 150402563 150402625 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 7; exon_id "ENSE00003494107.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3073 chr5 HAVANA CDS 150402563 150402625 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 7; exon_id "ENSE00003494107.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3074 chr5 HAVANA exon 150401670 150402250 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 8; exon_id "ENSE00002106380.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3075 chr5 HAVANA CDS 150402243 150402250 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 8; exon_id "ENSE00002106380.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3076 chr5 HAVANA stop_codon 150402240 150402242 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 8; exon_id "ENSE00002106380.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3077 chr5 HAVANA UTR 150412750 150412929 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 1; exon_id "ENSE00002140026.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3078 chr5 HAVANA UTR 150401670 150402242 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000353334.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-001"; exon_number 8; exon_id "ENSE00002106380.1"; level 2; protein_id "ENSP00000230685.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS47308.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374176.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3079 chr5 HAVANA transcript 150401699 150412732 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3080 chr5 HAVANA exon 150412625 150412732 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 1; exon_id "ENSE00002102744.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3081 chr5 HAVANA CDS 150412625 150412732 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 1; exon_id "ENSE00002102744.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3082 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3083 chr5 HAVANA CDS 150407152 150407324 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3084 chr5 HAVANA exon 150406881 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3085 chr5 HAVANA CDS 150406881 150406960 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3086 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3087 chr5 HAVANA CDS 150406259 150406321 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3088 chr5 HAVANA exon 150405085 150405180 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 5; exon_id "ENSE00003578099.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3089 chr5 HAVANA CDS 150405085 150405180 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 5; exon_id "ENSE00003578099.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3090 chr5 HAVANA exon 150404680 150404767 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 6; exon_id "ENSE00000841201.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3091 chr5 HAVANA CDS 150404680 150404767 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 6; exon_id "ENSE00000841201.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3092 chr5 HAVANA exon 150403121 150403312 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 7; exon_id "ENSE00003554133.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3093 chr5 HAVANA CDS 150403121 150403312 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 7; exon_id "ENSE00003554133.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3094 chr5 HAVANA exon 150401699 150402625 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 8; exon_id "ENSE00002108174.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3095 chr5 HAVANA CDS 150402480 150402625 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 8; exon_id "ENSE00002108174.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3096 chr5 HAVANA stop_codon 150402477 150402479 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 8; exon_id "ENSE00002108174.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3097 chr5 HAVANA UTR 150401699 150402479 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000518797.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-004"; exon_number 8; exon_id "ENSE00002108174.1"; level 2; protein_id "ENSP00000430614.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374179.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3098 chr5 HAVANA transcript 150401864 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3099 chr5 HAVANA exon 150412625 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3100 chr5 HAVANA CDS 150412625 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3101 chr5 HAVANA start_codon 150412747 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3102 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3103 chr5 HAVANA CDS 150407152 150407324 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3104 chr5 HAVANA exon 150406881 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3105 chr5 HAVANA CDS 150406881 150406960 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3106 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3107 chr5 HAVANA CDS 150406259 150406321 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3108 chr5 HAVANA exon 150401864 150402004 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 5; exon_id "ENSE00002111206.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3109 chr5 HAVANA CDS 150401990 150402004 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 5; exon_id "ENSE00002111206.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3110 chr5 HAVANA stop_codon 150401987 150401989 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 5; exon_id "ENSE00002111206.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3111 chr5 HAVANA UTR 150412750 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3112 chr5 HAVANA UTR 150401864 150401989 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000524315.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-011"; exon_number 5; exon_id "ENSE00002111206.1"; level 2; protein_id "ENSP00000429024.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374302.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3113 chr5 HAVANA transcript 150402152 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3114 chr5 HAVANA exon 150412625 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3115 chr5 HAVANA CDS 150412625 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3116 chr5 HAVANA start_codon 150412747 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3117 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3118 chr5 HAVANA CDS 150407152 150407324 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3119 chr5 HAVANA exon 150406881 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3120 chr5 HAVANA CDS 150406881 150406960 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3121 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3122 chr5 HAVANA CDS 150406259 150406321 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3123 chr5 HAVANA exon 150405085 150405180 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 5; exon_id "ENSE00003578099.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3124 chr5 HAVANA CDS 150405085 150405180 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 5; exon_id "ENSE00003578099.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3125 chr5 HAVANA exon 150404680 150404767 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 6; exon_id "ENSE00000841201.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3126 chr5 HAVANA CDS 150404680 150404767 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 6; exon_id "ENSE00000841201.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3127 chr5 HAVANA exon 150403121 150403312 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 7; exon_id "ENSE00003554133.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3128 chr5 HAVANA CDS 150403121 150403312 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 7; exon_id "ENSE00003554133.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3129 chr5 HAVANA exon 150402563 150402625 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 8; exon_id "ENSE00003494107.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3130 chr5 HAVANA CDS 150402563 150402625 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 8; exon_id "ENSE00003494107.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3131 chr5 HAVANA exon 150402152 150402250 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 9; exon_id "ENSE00002129676.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3132 chr5 HAVANA CDS 150402243 150402250 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 9; exon_id "ENSE00002129676.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3133 chr5 HAVANA stop_codon 150402240 150402242 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 9; exon_id "ENSE00002129676.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3134 chr5 HAVANA UTR 150412750 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3135 chr5 HAVANA UTR 150402152 150402242 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000009530.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "CD74-003"; exon_number 9; exon_id "ENSE00002129676.1"; level 2; protein_id "ENSP00000009530.7"; tag "basic"; transcript_support_level "2"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS47309.1"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374178.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3136 chr5 HAVANA transcript 150402170 150412739 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3137 chr5 HAVANA exon 150412625 150412739 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 1; exon_id "ENSE00002107530.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3138 chr5 HAVANA CDS 150412625 150412739 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 1; exon_id "ENSE00002107530.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3139 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3140 chr5 HAVANA CDS 150407152 150407324 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3141 chr5 HAVANA exon 150406881 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3142 chr5 HAVANA CDS 150406881 150406960 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 3; exon_id "ENSE00003680132.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3143 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3144 chr5 HAVANA CDS 150406259 150406321 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 4; exon_id "ENSE00003569785.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3145 chr5 HAVANA exon 150403121 150403312 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 5; exon_id "ENSE00003575954.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3146 chr5 HAVANA CDS 150403310 150403312 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 5; exon_id "ENSE00003575954.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3147 chr5 HAVANA stop_codon 150403307 150403309 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 5; exon_id "ENSE00003575954.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3148 chr5 HAVANA exon 150402563 150402625 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 6; exon_id "ENSE00003681370.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3149 chr5 HAVANA exon 150402170 150402250 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 7; exon_id "ENSE00002114965.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3150 chr5 HAVANA UTR 150403121 150403309 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 5; exon_id "ENSE00003575954.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3151 chr5 HAVANA UTR 150402563 150402625 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 6; exon_id "ENSE00003681370.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3152 chr5 HAVANA UTR 150402170 150402250 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523208.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-008"; exon_number 7; exon_id "ENSE00002114965.1"; level 2; protein_id "ENSP00000430654.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374183.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3153 chr5 HAVANA transcript 150404486 150412746 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517752.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-013"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374303.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3154 chr5 HAVANA exon 150412625 150412746 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517752.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-013"; exon_number 1; exon_id "ENSE00002132360.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374303.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3155 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517752.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-013"; exon_number 2; exon_id "ENSE00003488584.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374303.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3156 chr5 HAVANA exon 150406881 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517752.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-013"; exon_number 3; exon_id "ENSE00003464748.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374303.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3157 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517752.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-013"; exon_number 4; exon_id "ENSE00003613316.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374303.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3158 chr5 HAVANA exon 150405085 150405180 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517752.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-013"; exon_number 5; exon_id "ENSE00003464696.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374303.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3159 chr5 HAVANA exon 150404486 150404767 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517752.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-013"; exon_number 6; exon_id "ENSE00002118779.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374303.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3160 chr5 HAVANA transcript 150404664 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3161 chr5 HAVANA exon 150412625 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3162 chr5 HAVANA CDS 150412625 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3163 chr5 HAVANA start_codon 150412747 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3164 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3165 chr5 HAVANA CDS 150407152 150407324 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 2; exon_id "ENSE00003671108.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3166 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 3; exon_id "ENSE00003679390.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3167 chr5 HAVANA CDS 150406259 150406321 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 3; exon_id "ENSE00003679390.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3168 chr5 HAVANA exon 150405085 150405180 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 4; exon_id "ENSE00003615008.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3169 chr5 HAVANA CDS 150405176 150405180 . - 2 gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 4; exon_id "ENSE00003615008.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3170 chr5 HAVANA stop_codon 150405173 150405175 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 4; exon_id "ENSE00003615008.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3171 chr5 HAVANA exon 150404664 150404767 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 5; exon_id "ENSE00002112579.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3172 chr5 HAVANA UTR 150412750 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3173 chr5 HAVANA UTR 150405085 150405175 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 4; exon_id "ENSE00003615008.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3174 chr5 HAVANA UTR 150404664 150404767 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522246.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-009"; exon_number 5; exon_id "ENSE00002112579.1"; level 2; protein_id "ENSP00000429641.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374304.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3175 chr5 HAVANA transcript 150405316 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3176 chr5 HAVANA exon 150412625 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3177 chr5 HAVANA CDS 150412625 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3178 chr5 HAVANA start_codon 150412747 150412749 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3179 chr5 HAVANA exon 150406259 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 2; exon_id "ENSE00003597592.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3180 chr5 HAVANA CDS 150406291 150406321 . - 1 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 2; exon_id "ENSE00003597592.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3181 chr5 HAVANA stop_codon 150406288 150406290 . - 0 gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 2; exon_id "ENSE00003597592.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3182 chr5 HAVANA exon 150405316 150405671 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 3; exon_id "ENSE00002139762.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3183 chr5 HAVANA UTR 150412750 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 1; exon_id "ENSE00003588448.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3184 chr5 HAVANA UTR 150406259 150406290 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 2; exon_id "ENSE00003597592.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3185 chr5 HAVANA UTR 150405316 150405671 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523813.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "CD74-007"; exon_number 3; exon_id "ENSE00002139762.1"; level 2; protein_id "ENSP00000429478.1"; transcript_support_level "4"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374182.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3186 chr5 HAVANA transcript 150405978 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523836.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-006"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374181.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3187 chr5 HAVANA exon 150412625 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523836.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-006"; exon_number 1; exon_id "ENSE00003619879.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374181.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3188 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523836.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-006"; exon_number 2; exon_id "ENSE00003488584.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374181.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3189 chr5 HAVANA exon 150406881 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523836.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-006"; exon_number 3; exon_id "ENSE00003464748.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374181.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3190 chr5 HAVANA exon 150405978 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000523836.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-006"; exon_number 4; exon_id "ENSE00002094148.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374181.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3191 chr5 HAVANA transcript 150406039 150412912 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517791.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-005"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374180.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3192 chr5 HAVANA exon 150412625 150412912 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517791.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-005"; exon_number 1; exon_id "ENSE00002135861.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374180.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3193 chr5 HAVANA exon 150406881 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517791.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-005"; exon_number 2; exon_id "ENSE00002108936.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374180.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3194 chr5 HAVANA exon 150406039 150406321 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000517791.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-005"; exon_number 3; exon_id "ENSE00002102590.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374180.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3195 chr5 HAVANA transcript 150406705 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522153.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-010"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374306.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3196 chr5 HAVANA exon 150412625 150412751 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522153.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-010"; exon_number 1; exon_id "ENSE00003619879.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374306.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3197 chr5 HAVANA exon 150407152 150407324 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522153.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-010"; exon_number 2; exon_id "ENSE00003488584.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374306.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3198 chr5 HAVANA exon 150406705 150406960 . - . gene_id "ENSG00000019582.14"; transcript_id "ENST00000522153.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "CD74"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "CD74-010"; exon_number 3; exon_id "ENSE00002107346.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000163559.3"; havana_transcript "OTTHUMT00000374306.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3199 chr22 HAVANA transcript 29268009 29278041 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3200 chr22 HAVANA exon 29268009 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 1; exon_id "ENSE00001673497.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3201 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 1; exon_id "ENSE00001673497.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3202 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 1; exon_id "ENSE00001673497.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3203 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3204 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3205 chr22 HAVANA exon 29272386 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 3; exon_id "ENSE00001786880.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3206 chr22 HAVANA CDS 29272386 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 3; exon_id "ENSE00001786880.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3207 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3208 chr22 HAVANA CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3209 chr22 HAVANA exon 29278030 29278041 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 5; exon_id "ENSE00001750773.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3210 chr22 HAVANA CDS 29278030 29278041 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 5; exon_id "ENSE00001750773.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3211 chr22 HAVANA UTR 29268009 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000444626.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-016"; exon_number 1; exon_id "ENSE00001673497.1"; level 2; protein_id "ENSP00000416171.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321360.5";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3212 chr22 HAVANA transcript 29268018 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3213 chr22 HAVANA exon 29268018 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 1; exon_id "ENSE00001884360.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3214 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 1; exon_id "ENSE00001884360.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3215 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 1; exon_id "ENSE00001884360.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3216 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3217 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3218 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3219 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3220 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3221 chr22 HAVANA CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3222 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3223 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3224 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3225 chr22 HAVANA CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3226 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3227 chr22 HAVANA CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3228 chr22 HAVANA exon 29288606 29288786 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 8; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3229 chr22 HAVANA CDS 29288606 29288786 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 8; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3230 chr22 HAVANA exon 29291562 29291599 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 9; exon_id "ENSE00001300293.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3231 chr22 HAVANA CDS 29291562 29291599 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 9; exon_id "ENSE00001300293.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3232 chr22 HAVANA exon 29292137 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 10; exon_id "ENSE00003554408.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3233 chr22 HAVANA CDS 29292137 29292169 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 10; exon_id "ENSE00003554408.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3234 chr22 HAVANA exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 11; exon_id "ENSE00003470269.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3235 chr22 HAVANA CDS 29292488 29292606 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 11; exon_id "ENSE00003470269.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3236 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 12; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3237 chr22 HAVANA CDS 29296239 29296368 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 12; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3238 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 13; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3239 chr22 HAVANA CDS 29297827 29297949 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 13; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3240 chr22 HAVANA exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 14; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3241 chr22 HAVANA CDS 29298733 29298895 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 14; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3242 chr22 HAVANA exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 15; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3243 chr22 HAVANA CDS 29299234 29299331 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 15; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3244 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 16; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3245 chr22 HAVANA CDS 29299599 29299851 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 16; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3246 chr22 HAVANA exon 29300122 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 17; exon_id "ENSE00003584832.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3247 chr22 HAVANA CDS 29300122 29300158 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 17; exon_id "ENSE00003584832.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3248 chr22 HAVANA stop_codon 29300159 29300161 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 17; exon_id "ENSE00003584832.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3249 chr22 HAVANA UTR 29268018 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 1; exon_id "ENSE00001884360.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3250 chr22 HAVANA UTR 29300159 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000397938.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-001"; exon_number 17; exon_id "ENSE00003584832.1"; level 2; protein_id "ENSP00000381031.2"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS13851.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321345.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3251 chr22 HAVANA transcript 29268253 29282424 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3252 chr22 HAVANA exon 29268253 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 1; exon_id "ENSE00001712434.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3253 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 1; exon_id "ENSE00001712434.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3254 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 1; exon_id "ENSE00001712434.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3255 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3256 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3257 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3258 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3259 chr22 HAVANA exon 29273738 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 4; exon_id "ENSE00001615063.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3260 chr22 HAVANA CDS 29273738 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 4; exon_id "ENSE00001615063.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3261 chr22 HAVANA exon 29274265 29274282 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 5; exon_id "ENSE00001606923.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3262 chr22 HAVANA CDS 29274265 29274282 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 5; exon_id "ENSE00001606923.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3263 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 6; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3264 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 6; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3265 chr22 HAVANA exon 29282390 29282424 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 7; exon_id "ENSE00001719918.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3266 chr22 HAVANA CDS 29282390 29282424 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 7; exon_id "ENSE00001719918.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3267 chr22 HAVANA UTR 29268253 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000436425.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-012"; exon_number 1; exon_id "ENSE00001712434.1"; level 2; protein_id "ENSP00000406824.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321356.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3268 chr22 HAVANA transcript 29268253 29282456 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3269 chr22 HAVANA exon 29268253 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 1; exon_id "ENSE00001712434.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3270 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 1; exon_id "ENSE00001712434.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3271 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 1; exon_id "ENSE00001712434.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3272 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3273 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3274 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3275 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3276 chr22 HAVANA exon 29273738 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 4; exon_id "ENSE00001615063.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3277 chr22 HAVANA CDS 29273738 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 4; exon_id "ENSE00001615063.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3278 chr22 HAVANA exon 29274268 29274282 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 5; exon_id "ENSE00001737562.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3279 chr22 HAVANA CDS 29274268 29274282 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 5; exon_id "ENSE00001737562.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3280 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 6; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3281 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 6; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3282 chr22 HAVANA exon 29282390 29282456 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 7; exon_id "ENSE00001701426.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3283 chr22 HAVANA CDS 29282390 29282456 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 7; exon_id "ENSE00001701426.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3284 chr22 HAVANA UTR 29268253 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000447973.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-014"; exon_number 1; exon_id "ENSE00001712434.1"; level 2; protein_id "ENSP00000405947.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321358.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3285 chr22 HAVANA transcript 29268273 29274453 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000485037.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-003"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321347.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3286 chr22 HAVANA exon 29268273 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000485037.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-003"; exon_number 1; exon_id "ENSE00003618345.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321347.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3287 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000485037.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-003"; exon_number 2; exon_id "ENSE00003576843.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321347.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3288 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000485037.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-003"; exon_number 3; exon_id "ENSE00003551283.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321347.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3289 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000485037.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-003"; exon_number 4; exon_id "ENSE00003684122.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321347.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3290 chr22 HAVANA exon 29274265 29274453 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000485037.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-003"; exon_number 5; exon_id "ENSE00001826473.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321347.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3291 chr22 HAVANA transcript 29268273 29300336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3292 chr22 HAVANA exon 29268273 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 1; exon_id "ENSE00003642787.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3293 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 1; exon_id "ENSE00003642787.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3294 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 1; exon_id "ENSE00003642787.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3295 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3296 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3297 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3298 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3299 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3300 chr22 HAVANA CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3301 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3302 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3303 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3304 chr22 HAVANA CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3305 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3306 chr22 HAVANA CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3307 chr22 HAVANA exon 29288606 29288786 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 8; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3308 chr22 HAVANA CDS 29288606 29288786 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 8; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3309 chr22 HAVANA exon 29291565 29291599 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 9; exon_id "ENSE00001626177.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3310 chr22 HAVANA CDS 29291565 29291599 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 9; exon_id "ENSE00001626177.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3311 chr22 HAVANA exon 29292137 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 10; exon_id "ENSE00003554408.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3312 chr22 HAVANA CDS 29292137 29292169 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 10; exon_id "ENSE00003554408.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3313 chr22 HAVANA exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 11; exon_id "ENSE00003470269.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3314 chr22 HAVANA CDS 29292488 29292606 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 11; exon_id "ENSE00003470269.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3315 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 12; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3316 chr22 HAVANA CDS 29296239 29296368 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 12; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3317 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 13; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3318 chr22 HAVANA CDS 29297827 29297949 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 13; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3319 chr22 HAVANA exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 14; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3320 chr22 HAVANA CDS 29298733 29298895 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 14; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3321 chr22 HAVANA exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 15; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3322 chr22 HAVANA CDS 29299234 29299331 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 15; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3323 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 16; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3324 chr22 HAVANA CDS 29299599 29299851 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 16; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3325 chr22 HAVANA exon 29300122 29300336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 17; exon_id "ENSE00003555299.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3326 chr22 HAVANA CDS 29300122 29300158 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 17; exon_id "ENSE00003555299.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3327 chr22 HAVANA stop_codon 29300159 29300161 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 17; exon_id "ENSE00003555299.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3328 chr22 HAVANA UTR 29268273 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 1; exon_id "ENSE00003642787.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3329 chr22 HAVANA UTR 29300159 29300336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000406548.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-002"; exon_number 17; exon_id "ENSE00003555299.1"; level 2; protein_id "ENSP00000385726.1"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54513.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321346.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3330 chr22 HAVANA transcript 29268282 29288687 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3331 chr22 HAVANA exon 29268282 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 1; exon_id "ENSE00001783499.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3332 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 1; exon_id "ENSE00001783499.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3333 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 1; exon_id "ENSE00001783499.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3334 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3335 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3336 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3337 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3338 chr22 HAVANA exon 29273738 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 4; exon_id "ENSE00001615063.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3339 chr22 HAVANA CDS 29273738 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 4; exon_id "ENSE00001615063.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3340 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3341 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3342 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3343 chr22 HAVANA CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3344 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3345 chr22 HAVANA CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3346 chr22 HAVANA exon 29288606 29288687 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 8; exon_id "ENSE00001750328.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3347 chr22 HAVANA CDS 29288606 29288687 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 8; exon_id "ENSE00001750328.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3348 chr22 HAVANA UTR 29268282 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000437155.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-013"; exon_number 1; exon_id "ENSE00001783499.1"; level 2; protein_id "ENSP00000412670.2"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321357.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3349 chr22 HAVANA transcript 29268290 29287106 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3350 chr22 HAVANA exon 29268290 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 1; exon_id "ENSE00001326313.6"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3351 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 1; exon_id "ENSE00001326313.6"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3352 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 1; exon_id "ENSE00001326313.6"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3353 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3354 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3355 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3356 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3357 chr22 HAVANA exon 29278131 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 4; exon_id "ENSE00001731343.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3358 chr22 HAVANA CDS 29278131 29278216 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 4; exon_id "ENSE00001731343.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3359 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 5; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3360 chr22 HAVANA CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 5; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3361 chr22 HAVANA exon 29286923 29287106 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 6; exon_id "ENSE00001632886.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3362 chr22 HAVANA CDS 29286923 29287106 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 6; exon_id "ENSE00001632886.1"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3363 chr22 HAVANA UTR 29268290 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000415761.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-017"; exon_number 1; exon_id "ENSE00001326313.6"; level 2; protein_id "ENSP00000395200.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321361.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3364 chr22 HAVANA transcript 29268291 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3365 chr22 HAVANA exon 29268291 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 1; exon_id "ENSE00001930494.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3366 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 1; exon_id "ENSE00001930494.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3367 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 1; exon_id "ENSE00001930494.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3368 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3369 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3370 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3371 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3372 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3373 chr22 HAVANA CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3374 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3375 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3376 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3377 chr22 HAVANA CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3378 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3379 chr22 HAVANA CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3380 chr22 HAVANA exon 29288606 29288755 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 8; exon_id "ENSE00001552585.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3381 chr22 HAVANA CDS 29288606 29288755 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 8; exon_id "ENSE00001552585.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3382 chr22 HAVANA exon 29292500 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 9; exon_id "ENSE00001558454.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3383 chr22 HAVANA CDS 29292500 29292606 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 9; exon_id "ENSE00001558454.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3384 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 10; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3385 chr22 HAVANA CDS 29296239 29296368 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 10; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3386 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 11; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3387 chr22 HAVANA CDS 29297827 29297949 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 11; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3388 chr22 HAVANA exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 12; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3389 chr22 HAVANA CDS 29298733 29298895 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 12; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3390 chr22 HAVANA exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 13; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3391 chr22 HAVANA CDS 29299234 29299331 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 13; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3392 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 14; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3393 chr22 HAVANA CDS 29299599 29299851 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 14; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3394 chr22 HAVANA exon 29300122 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 15; exon_id "ENSE00003584832.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3395 chr22 HAVANA CDS 29300122 29300158 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 15; exon_id "ENSE00003584832.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3396 chr22 HAVANA stop_codon 29300159 29300161 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 15; exon_id "ENSE00003584832.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3397 chr22 HAVANA UTR 29268291 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 1; exon_id "ENSE00001930494.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3398 chr22 HAVANA UTR 29300159 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000331029.11"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-007"; exon_number 15; exon_id "ENSE00003584832.1"; level 2; protein_id "ENSP00000330516.7"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321351.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3399 chr22 HAVANA transcript 29268313 29291019 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3400 chr22 HAVANA exon 29268313 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; exon_number 1; exon_id "ENSE00001951625.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3401 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; exon_number 2; exon_id "ENSE00003576843.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3402 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; exon_number 3; exon_id "ENSE00003551283.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3403 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; exon_number 4; exon_id "ENSE00003684122.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3404 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; exon_number 5; exon_id "ENSE00003581432.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3405 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; exon_number 6; exon_id "ENSE00003672069.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3406 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; exon_number 7; exon_id "ENSE00003495918.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3407 chr22 HAVANA exon 29288606 29291019 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483415.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-006"; exon_number 8; exon_id "ENSE00001861491.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321350.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3408 chr22 HAVANA transcript 29268316 29300343 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3409 chr22 HAVANA exon 29268316 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 1; exon_id "ENSE00002072009.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3410 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 1; exon_id "ENSE00002072009.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3411 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 1; exon_id "ENSE00002072009.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3412 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3413 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3414 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3415 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3416 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3417 chr22 HAVANA CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3418 chr22 HAVANA exon 29274265 29274282 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 5; exon_id "ENSE00001606923.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3419 chr22 HAVANA CDS 29274265 29274282 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 5; exon_id "ENSE00001606923.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3420 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 6; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3421 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 6; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3422 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 7; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3423 chr22 HAVANA CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 7; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3424 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 8; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3425 chr22 HAVANA CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 8; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3426 chr22 HAVANA exon 29288606 29288786 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 9; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3427 chr22 HAVANA CDS 29288606 29288786 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 9; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3428 chr22 HAVANA exon 29291565 29291599 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 10; exon_id "ENSE00001626177.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3429 chr22 HAVANA CDS 29291565 29291599 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 10; exon_id "ENSE00001626177.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3430 chr22 HAVANA exon 29292137 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 11; exon_id "ENSE00003554408.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3431 chr22 HAVANA CDS 29292137 29292169 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 11; exon_id "ENSE00003554408.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3432 chr22 HAVANA exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 12; exon_id "ENSE00003470269.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3433 chr22 HAVANA CDS 29292488 29292606 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 12; exon_id "ENSE00003470269.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3434 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 13; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3435 chr22 HAVANA CDS 29296239 29296368 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 13; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3436 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 14; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3437 chr22 HAVANA CDS 29297827 29297949 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 14; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3438 chr22 HAVANA exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 15; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3439 chr22 HAVANA CDS 29298733 29298895 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 15; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3440 chr22 HAVANA exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 16; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3441 chr22 HAVANA CDS 29299234 29299331 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 16; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3442 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 17; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3443 chr22 HAVANA CDS 29299599 29299851 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 17; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3444 chr22 HAVANA exon 29300122 29300343 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 18; exon_id "ENSE00001756705.2"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3445 chr22 HAVANA CDS 29300122 29300158 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 18; exon_id "ENSE00001756705.2"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3446 chr22 HAVANA stop_codon 29300159 29300161 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 18; exon_id "ENSE00001756705.2"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3447 chr22 HAVANA UTR 29268316 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 1; exon_id "ENSE00002072009.1"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3448 chr22 HAVANA UTR 29300159 29300343 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000414183.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-021"; exon_number 18; exon_id "ENSE00001756705.2"; level 2; protein_id "ENSP00000400142.2"; tag "basic"; transcript_support_level "2"; tag "appris_principal_4"; tag "CCDS"; ccdsid "CCDS13852.2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000358290.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3449 chr22 HAVANA transcript 29268318 29290684 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3450 chr22 HAVANA exon 29268318 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 1; exon_id "ENSE00001941182.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3451 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 1; exon_id "ENSE00001941182.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3452 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 1; exon_id "ENSE00001941182.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3453 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3454 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3455 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3456 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3457 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3458 chr22 HAVANA CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3459 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3460 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3461 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3462 chr22 HAVANA CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 6; exon_id "ENSE00003523502.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3463 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3464 chr22 HAVANA CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 7; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3465 chr22 HAVANA exon 29288606 29288786 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 8; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3466 chr22 HAVANA CDS 29288606 29288786 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 8; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3467 chr22 HAVANA exon 29290413 29290684 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 9; exon_id "ENSE00001313979.4"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3468 chr22 HAVANA CDS 29290413 29290500 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 9; exon_id "ENSE00001313979.4"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3469 chr22 HAVANA stop_codon 29290501 29290503 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 9; exon_id "ENSE00001313979.4"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3470 chr22 HAVANA UTR 29268318 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 1; exon_id "ENSE00001941182.1"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3471 chr22 HAVANA UTR 29290501 29290684 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000333395.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-004"; exon_number 9; exon_id "ENSE00001313979.4"; level 2; protein_id "ENSP00000327456.6"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS54512.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3472 chr22 HAVANA transcript 29268326 29288679 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3473 chr22 HAVANA exon 29268326 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 1; exon_id "ENSE00001804368.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3474 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 1; exon_id "ENSE00001804368.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3475 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 1; exon_id "ENSE00001804368.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3476 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3477 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3478 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3479 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3480 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3481 chr22 HAVANA CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3482 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3483 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3484 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 6; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3485 chr22 HAVANA CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 6; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3486 chr22 HAVANA exon 29288606 29288679 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 7; exon_id "ENSE00001725714.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3487 chr22 HAVANA CDS 29288606 29288679 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 7; exon_id "ENSE00001725714.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3488 chr22 HAVANA UTR 29268326 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000455726.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-018"; exon_number 1; exon_id "ENSE00001804368.1"; level 2; protein_id "ENSP00000393637.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321362.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3489 chr22 HAVANA transcript 29268326 29300336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3490 chr22 HAVANA exon 29268326 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 1; exon_id "ENSE00001804368.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3491 chr22 HAVANA CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 1; exon_id "ENSE00001804368.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3492 chr22 HAVANA start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 1; exon_id "ENSE00001804368.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3493 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3494 chr22 HAVANA CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 2; exon_id "ENSE00003671623.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3495 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3496 chr22 HAVANA CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 3; exon_id "ENSE00003531289.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3497 chr22 HAVANA exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3498 chr22 HAVANA CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 4; exon_id "ENSE00003584318.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3499 chr22 HAVANA exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3500 chr22 HAVANA CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 5; exon_id "ENSE00003495391.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3501 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 6; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3502 chr22 HAVANA CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 6; exon_id "ENSE00003570564.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3503 chr22 HAVANA exon 29288606 29288786 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 7; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3504 chr22 HAVANA CDS 29288606 29288786 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 7; exon_id "ENSE00001787873.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3505 chr22 HAVANA exon 29291562 29291599 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 8; exon_id "ENSE00001300293.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3506 chr22 HAVANA CDS 29291562 29291599 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 8; exon_id "ENSE00001300293.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3507 chr22 HAVANA exon 29292137 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 9; exon_id "ENSE00003554408.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3508 chr22 HAVANA CDS 29292137 29292169 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 9; exon_id "ENSE00003554408.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3509 chr22 HAVANA exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 10; exon_id "ENSE00003470269.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3510 chr22 HAVANA CDS 29292488 29292606 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 10; exon_id "ENSE00003470269.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3511 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 11; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3512 chr22 HAVANA CDS 29296239 29296368 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 11; exon_id "ENSE00003524528.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3513 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 12; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3514 chr22 HAVANA CDS 29297827 29297949 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 12; exon_id "ENSE00003534354.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3515 chr22 HAVANA exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 13; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3516 chr22 HAVANA CDS 29298733 29298895 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 13; exon_id "ENSE00003589287.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3517 chr22 HAVANA exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 14; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3518 chr22 HAVANA CDS 29299234 29299331 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 14; exon_id "ENSE00003684056.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3519 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 15; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3520 chr22 HAVANA CDS 29299599 29299851 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 15; exon_id "ENSE00003513248.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3521 chr22 HAVANA exon 29300122 29300336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 16; exon_id "ENSE00003555299.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3522 chr22 HAVANA CDS 29300122 29300158 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 16; exon_id "ENSE00003555299.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3523 chr22 HAVANA stop_codon 29300159 29300161 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 16; exon_id "ENSE00003555299.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3524 chr22 HAVANA UTR 29268326 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 1; exon_id "ENSE00001804368.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3525 chr22 HAVANA UTR 29300159 29300336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332035.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-008"; exon_number 16; exon_id "ENSE00003555299.1"; level 2; protein_id "ENSP00000331699.6"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS54514.1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321352.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3526 chr22 HAVANA transcript 29269223 29273792 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000493426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-015"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321359.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3527 chr22 HAVANA exon 29269223 29269662 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000493426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-015"; exon_number 1; exon_id "ENSE00001857260.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321359.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3528 chr22 HAVANA exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000493426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-015"; exon_number 2; exon_id "ENSE00003576843.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321359.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3529 chr22 HAVANA exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000493426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-015"; exon_number 3; exon_id "ENSE00003551283.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321359.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3530 chr22 HAVANA exon 29273741 29273792 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000493426.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-015"; exon_number 4; exon_id "ENSE00001929426.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321359.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3531 chr22 HAVANA transcript 29275629 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3532 chr22 HAVANA exon 29275629 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 1; exon_id "ENSE00001958390.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3533 chr22 HAVANA exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 2; exon_id "ENSE00003672069.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3534 chr22 HAVANA exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 3; exon_id "ENSE00003495918.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3535 chr22 HAVANA exon 29288606 29291599 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 4; exon_id "ENSE00001859114.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3536 chr22 HAVANA exon 29292137 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 5; exon_id "ENSE00003485783.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3537 chr22 HAVANA exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 6; exon_id "ENSE00003602080.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3538 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 7; exon_id "ENSE00003566889.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3539 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 8; exon_id "ENSE00003592752.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3540 chr22 HAVANA exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 9; exon_id "ENSE00003612474.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3541 chr22 HAVANA exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 10; exon_id "ENSE00003651719.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3542 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 11; exon_id "ENSE00003466618.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3543 chr22 HAVANA exon 29300122 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000479135.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-005"; exon_number 12; exon_id "ENSE00003610795.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321349.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3544 chr22 HAVANA transcript 29290830 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3545 chr22 HAVANA exon 29290830 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; exon_number 1; exon_id "ENSE00001911877.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3546 chr22 HAVANA exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; exon_number 2; exon_id "ENSE00003602080.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3547 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; exon_number 3; exon_id "ENSE00003566889.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3548 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; exon_number 4; exon_id "ENSE00003592752.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3549 chr22 HAVANA exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; exon_number 5; exon_id "ENSE00003612474.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3550 chr22 HAVANA exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; exon_number 6; exon_id "ENSE00003651719.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3551 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; exon_number 7; exon_id "ENSE00003466618.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3552 chr22 HAVANA exon 29300122 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000469669.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-009"; exon_number 8; exon_id "ENSE00003610795.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321353.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3553 chr22 HAVANA transcript 29291929 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483629.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-010"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321354.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3554 chr22 HAVANA exon 29291929 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483629.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-010"; exon_number 1; exon_id "ENSE00001835155.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321354.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3555 chr22 HAVANA exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483629.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-010"; exon_number 2; exon_id "ENSE00003602080.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321354.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3556 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483629.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-010"; exon_number 3; exon_id "ENSE00003566889.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321354.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3557 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483629.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-010"; exon_number 4; exon_id "ENSE00003592752.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321354.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3558 chr22 HAVANA exon 29298733 29299280 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483629.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-010"; exon_number 5; exon_id "ENSE00001906015.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321354.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3559 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483629.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-010"; exon_number 6; exon_id "ENSE00003466618.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321354.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3560 chr22 HAVANA exon 29300122 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000483629.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-010"; exon_number 7; exon_id "ENSE00003610795.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321354.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3561 chr22 HAVANA transcript 29292159 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3562 chr22 HAVANA exon 29292159 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 1; exon_id "ENSE00001805029.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3563 chr22 HAVANA CDS 29292159 29292169 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 1; exon_id "ENSE00001805029.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3564 chr22 HAVANA exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 2; exon_id "ENSE00003470269.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3565 chr22 HAVANA CDS 29292488 29292606 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 2; exon_id "ENSE00003470269.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3566 chr22 HAVANA exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 3; exon_id "ENSE00003524528.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3567 chr22 HAVANA CDS 29296239 29296368 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 3; exon_id "ENSE00003524528.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3568 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 4; exon_id "ENSE00003534354.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3569 chr22 HAVANA CDS 29297827 29297949 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 4; exon_id "ENSE00003534354.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3570 chr22 HAVANA exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 5; exon_id "ENSE00003589287.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3571 chr22 HAVANA CDS 29298733 29298895 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 5; exon_id "ENSE00003589287.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3572 chr22 HAVANA exon 29299195 29299280 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 6; exon_id "ENSE00001732877.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3573 chr22 HAVANA CDS 29299195 29299280 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 6; exon_id "ENSE00001732877.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3574 chr22 HAVANA exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 7; exon_id "ENSE00003513248.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3575 chr22 HAVANA CDS 29299599 29299851 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 7; exon_id "ENSE00003513248.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3576 chr22 HAVANA exon 29300122 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 8; exon_id "ENSE00003584832.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3577 chr22 HAVANA CDS 29300122 29300158 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 8; exon_id "ENSE00003584832.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3578 chr22 HAVANA stop_codon 29300159 29300161 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 8; exon_id "ENSE00003584832.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3579 chr22 HAVANA UTR 29300159 29300525 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000360091.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-019"; exon_number 8; exon_id "ENSE00003584832.1"; level 1; protein_id "ENSP00000353204.3"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; tag "appris_alternative_2"; tag "exp_conf"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321363.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3580 chr22 HAVANA transcript 29295526 29300336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000610553.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-011"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321355.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3581 chr22 HAVANA exon 29295526 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000610553.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-011"; exon_number 1; exon_id "ENSE00003721179.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321355.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3582 chr22 HAVANA exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000610553.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-011"; exon_number 2; exon_id "ENSE00003592752.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321355.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3583 chr22 HAVANA exon 29298733 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000610553.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-011"; exon_number 3; exon_id "ENSE00003741478.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321355.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3584 chr22 HAVANA exon 29300122 29300336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000610553.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "EWSR1-011"; exon_number 4; exon_id "ENSE00003748554.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000151107.9"; havana_transcript "OTTHUMT00000321355.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3585 chr22 ENSEMBL transcript 29268009 29300522 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3586 chr22 ENSEMBL exon 29268009 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 1; exon_id "ENSE00001673497.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3587 chr22 ENSEMBL CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 1; exon_id "ENSE00001673497.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3588 chr22 ENSEMBL start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 1; exon_id "ENSE00001673497.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3589 chr22 ENSEMBL exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 2; exon_id "ENSE00003671623.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3590 chr22 ENSEMBL CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 2; exon_id "ENSE00003671623.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3591 chr22 ENSEMBL exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 3; exon_id "ENSE00003531289.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3592 chr22 ENSEMBL CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 3; exon_id "ENSE00003531289.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3593 chr22 ENSEMBL exon 29273741 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 4; exon_id "ENSE00003584318.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3594 chr22 ENSEMBL CDS 29273741 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 4; exon_id "ENSE00003584318.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3595 chr22 ENSEMBL exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 5; exon_id "ENSE00003495391.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3596 chr22 ENSEMBL CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 5; exon_id "ENSE00003495391.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3597 chr22 ENSEMBL exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 6; exon_id "ENSE00003523502.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3598 chr22 ENSEMBL CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 6; exon_id "ENSE00003523502.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3599 chr22 ENSEMBL exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 7; exon_id "ENSE00003570564.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3600 chr22 ENSEMBL CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 7; exon_id "ENSE00003570564.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3601 chr22 ENSEMBL exon 29288987 29289062 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 8; exon_id "ENSE00003726975.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3602 chr22 ENSEMBL CDS 29288987 29289062 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 8; exon_id "ENSE00003726975.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3603 chr22 ENSEMBL exon 29291565 29291599 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 9; exon_id "ENSE00001626177.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3604 chr22 ENSEMBL CDS 29291565 29291599 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 9; exon_id "ENSE00001626177.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3605 chr22 ENSEMBL exon 29292137 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 10; exon_id "ENSE00003554408.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3606 chr22 ENSEMBL CDS 29292137 29292169 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 10; exon_id "ENSE00003554408.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3607 chr22 ENSEMBL exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 11; exon_id "ENSE00003470269.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3608 chr22 ENSEMBL CDS 29292488 29292606 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 11; exon_id "ENSE00003470269.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3609 chr22 ENSEMBL exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 12; exon_id "ENSE00003524528.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3610 chr22 ENSEMBL CDS 29296239 29296368 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 12; exon_id "ENSE00003524528.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3611 chr22 ENSEMBL exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 13; exon_id "ENSE00003534354.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3612 chr22 ENSEMBL CDS 29297827 29297949 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 13; exon_id "ENSE00003534354.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3613 chr22 ENSEMBL exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 14; exon_id "ENSE00003589287.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3614 chr22 ENSEMBL CDS 29298733 29298895 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 14; exon_id "ENSE00003589287.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3615 chr22 ENSEMBL exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 15; exon_id "ENSE00003684056.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3616 chr22 ENSEMBL CDS 29299234 29299331 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 15; exon_id "ENSE00003684056.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3617 chr22 ENSEMBL exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 16; exon_id "ENSE00003513248.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3618 chr22 ENSEMBL CDS 29299599 29299851 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 16; exon_id "ENSE00003513248.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3619 chr22 ENSEMBL exon 29300122 29300522 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 17; exon_id "ENSE00001772638.3"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3620 chr22 ENSEMBL CDS 29300122 29300158 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 17; exon_id "ENSE00001772638.3"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3621 chr22 ENSEMBL stop_codon 29300159 29300161 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 17; exon_id "ENSE00001772638.3"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3622 chr22 ENSEMBL UTR 29268009 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 1; exon_id "ENSE00001673497.1"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3623 chr22 ENSEMBL UTR 29300159 29300522 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000332050.10"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-201"; exon_number 17; exon_id "ENSE00001772638.3"; level 3; protein_id "ENSP00000330896.7"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3624 chr22 ENSEMBL transcript 29268009 29300524 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3625 chr22 ENSEMBL exon 29268009 29268349 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 1; exon_id "ENSE00001673497.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3626 chr22 ENSEMBL CDS 29268337 29268349 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 1; exon_id "ENSE00001673497.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3627 chr22 ENSEMBL start_codon 29268337 29268339 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 1; exon_id "ENSE00001673497.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3628 chr22 ENSEMBL exon 29272216 29272252 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 2; exon_id "ENSE00003671623.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3629 chr22 ENSEMBL CDS 29272216 29272252 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 2; exon_id "ENSE00003671623.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3630 chr22 ENSEMBL exon 29272380 29272431 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 3; exon_id "ENSE00003531289.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3631 chr22 ENSEMBL CDS 29272380 29272431 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 3; exon_id "ENSE00003531289.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3632 chr22 ENSEMBL exon 29273738 29273864 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 4; exon_id "ENSE00001615063.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3633 chr22 ENSEMBL CDS 29273738 29273864 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 4; exon_id "ENSE00001615063.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3634 chr22 ENSEMBL exon 29278030 29278216 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 5; exon_id "ENSE00003495391.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3635 chr22 ENSEMBL CDS 29278030 29278216 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 5; exon_id "ENSE00003495391.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3636 chr22 ENSEMBL exon 29282390 29282557 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 6; exon_id "ENSE00003523502.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3637 chr22 ENSEMBL CDS 29282390 29282557 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 6; exon_id "ENSE00003523502.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3638 chr22 ENSEMBL exon 29286923 29287134 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 7; exon_id "ENSE00003570564.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3639 chr22 ENSEMBL CDS 29286923 29287134 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 7; exon_id "ENSE00003570564.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3640 chr22 ENSEMBL exon 29292137 29292169 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 8; exon_id "ENSE00003554408.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3641 chr22 ENSEMBL CDS 29292137 29292169 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 8; exon_id "ENSE00003554408.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3642 chr22 ENSEMBL exon 29292488 29292606 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 9; exon_id "ENSE00003470269.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3643 chr22 ENSEMBL CDS 29292488 29292606 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 9; exon_id "ENSE00003470269.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3644 chr22 ENSEMBL exon 29296239 29296368 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 10; exon_id "ENSE00003524528.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3645 chr22 ENSEMBL CDS 29296239 29296368 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 10; exon_id "ENSE00003524528.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3646 chr22 ENSEMBL exon 29297827 29297949 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 11; exon_id "ENSE00003534354.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3647 chr22 ENSEMBL CDS 29297827 29297949 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 11; exon_id "ENSE00003534354.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3648 chr22 ENSEMBL exon 29298733 29298895 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 12; exon_id "ENSE00003589287.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3649 chr22 ENSEMBL CDS 29298733 29298895 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 12; exon_id "ENSE00003589287.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3650 chr22 ENSEMBL exon 29299234 29299331 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 13; exon_id "ENSE00003684056.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3651 chr22 ENSEMBL CDS 29299234 29299331 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 13; exon_id "ENSE00003684056.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3652 chr22 ENSEMBL exon 29299599 29299851 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 14; exon_id "ENSE00003513248.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3653 chr22 ENSEMBL CDS 29299599 29299851 . + 2 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 14; exon_id "ENSE00003513248.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3654 chr22 ENSEMBL exon 29300122 29300524 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 15; exon_id "ENSE00003773449.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3655 chr22 ENSEMBL CDS 29300122 29300158 . + 1 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 15; exon_id "ENSE00003773449.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3656 chr22 ENSEMBL stop_codon 29300159 29300161 . + 0 gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 15; exon_id "ENSE00003773449.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3657 chr22 ENSEMBL UTR 29268009 29268336 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 1; exon_id "ENSE00001673497.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3658 chr22 ENSEMBL UTR 29300159 29300524 . + . gene_id "ENSG00000182944.17"; transcript_id "ENST00000629659.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "EWSR1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "EWSR1-202"; exon_number 15; exon_id "ENSE00003773449.1"; level 3; protein_id "ENSP00000486709.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000151107.9";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3659 chr11 HAVANA transcript 107502726 107565746 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3660 chr11 HAVANA exon 107565601 107565746 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 1; exon_id "ENSE00002144331.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3661 chr11 HAVANA exon 107560765 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3662 chr11 HAVANA CDS 107560765 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3663 chr11 HAVANA start_codon 107560891 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3664 chr11 HAVANA exon 107556766 107557003 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3665 chr11 HAVANA CDS 107556766 107557003 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3666 chr11 HAVANA exon 107553847 107553978 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 4; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3667 chr11 HAVANA CDS 107553847 107553978 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 4; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3668 chr11 HAVANA exon 107553108 107553203 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 5; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3669 chr11 HAVANA CDS 107553108 107553203 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 5; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3670 chr11 HAVANA exon 107551808 107551912 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 6; exon_id "ENSE00003539749.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3671 chr11 HAVANA CDS 107551808 107551912 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 6; exon_id "ENSE00003539749.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3672 chr11 HAVANA exon 107549753 107549823 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 7; exon_id "ENSE00003692677.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3673 chr11 HAVANA CDS 107549753 107549823 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 7; exon_id "ENSE00003692677.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3674 chr11 HAVANA exon 107532300 107532406 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 8; exon_id "ENSE00003499830.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3675 chr11 HAVANA CDS 107532300 107532406 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 8; exon_id "ENSE00003499830.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3676 chr11 HAVANA exon 107525441 107525592 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 9; exon_id "ENSE00003625239.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3677 chr11 HAVANA CDS 107525441 107525592 . - 1 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 9; exon_id "ENSE00003625239.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3678 chr11 HAVANA exon 107522299 107522555 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 10; exon_id "ENSE00001611673.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3679 chr11 HAVANA CDS 107522299 107522555 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 10; exon_id "ENSE00001611673.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3680 chr11 HAVANA exon 107510887 107511036 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 11; exon_id "ENSE00001634419.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3681 chr11 HAVANA CDS 107510887 107511036 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 11; exon_id "ENSE00001634419.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3682 chr11 HAVANA exon 107502726 107505215 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 12; exon_id "ENSE00001637779.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3683 chr11 HAVANA CDS 107504661 107505215 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 12; exon_id "ENSE00001637779.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3684 chr11 HAVANA stop_codon 107504658 107504660 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 12; exon_id "ENSE00001637779.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3685 chr11 HAVANA UTR 107565601 107565746 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 1; exon_id "ENSE00002144331.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3686 chr11 HAVANA UTR 107560894 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3687 chr11 HAVANA UTR 107502726 107504660 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000428149.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-001"; exon_number 12; exon_id "ENSE00001637779.1"; level 2; protein_id "ENSP00000415885.2"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347071.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3688 chr11 HAVANA transcript 107503029 107565735 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3689 chr11 HAVANA exon 107565601 107565735 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 1; exon_id "ENSE00001742813.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3690 chr11 HAVANA exon 107560765 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3691 chr11 HAVANA CDS 107560765 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3692 chr11 HAVANA start_codon 107560891 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3693 chr11 HAVANA exon 107556766 107557003 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3694 chr11 HAVANA CDS 107556766 107557003 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3695 chr11 HAVANA exon 107553847 107553978 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 4; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3696 chr11 HAVANA CDS 107553847 107553978 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 4; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3697 chr11 HAVANA exon 107553108 107553203 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 5; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3698 chr11 HAVANA CDS 107553108 107553203 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 5; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3699 chr11 HAVANA exon 107551865 107551912 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 6; exon_id "ENSE00001648676.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3700 chr11 HAVANA CDS 107551865 107551912 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 6; exon_id "ENSE00001648676.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3701 chr11 HAVANA exon 107503029 107504540 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 7; exon_id "ENSE00001651432.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3702 chr11 HAVANA CDS 107504512 107504540 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 7; exon_id "ENSE00001651432.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3703 chr11 HAVANA stop_codon 107504509 107504511 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 7; exon_id "ENSE00001651432.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3704 chr11 HAVANA UTR 107565601 107565735 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 1; exon_id "ENSE00001742813.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3705 chr11 HAVANA UTR 107560894 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3706 chr11 HAVANA UTR 107503029 107504511 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000429370.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-003"; exon_number 7; exon_id "ENSE00001651432.1"; level 2; protein_id "ENSP00000391225.1"; tag "basic"; transcript_support_level "2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347073.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3707 chr11 HAVANA transcript 107504595 107565518 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3708 chr11 HAVANA exon 107565453 107565518 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 1; exon_id "ENSE00001724312.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3709 chr11 HAVANA exon 107565162 107565214 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 2; exon_id "ENSE00001620533.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3710 chr11 HAVANA exon 107563547 107563736 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 3; exon_id "ENSE00001769102.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3711 chr11 HAVANA exon 107562699 107562816 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 4; exon_id "ENSE00001727109.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3712 chr11 HAVANA exon 107560765 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 5; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3713 chr11 HAVANA CDS 107560765 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 5; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3714 chr11 HAVANA start_codon 107560891 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 5; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3715 chr11 HAVANA exon 107556766 107557003 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 6; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3716 chr11 HAVANA CDS 107556766 107557003 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 6; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3717 chr11 HAVANA exon 107553847 107553978 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 7; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3718 chr11 HAVANA CDS 107553847 107553978 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 7; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3719 chr11 HAVANA exon 107553108 107553203 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 8; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3720 chr11 HAVANA CDS 107553108 107553203 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 8; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3721 chr11 HAVANA exon 107551808 107551912 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 9; exon_id "ENSE00003539749.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3722 chr11 HAVANA CDS 107551808 107551912 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 9; exon_id "ENSE00003539749.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3723 chr11 HAVANA exon 107549753 107549823 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 10; exon_id "ENSE00003692677.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3724 chr11 HAVANA CDS 107549753 107549823 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 10; exon_id "ENSE00003692677.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3725 chr11 HAVANA exon 107532300 107532406 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 11; exon_id "ENSE00003499830.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3726 chr11 HAVANA CDS 107532300 107532406 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 11; exon_id "ENSE00003499830.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3727 chr11 HAVANA exon 107525441 107525592 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 12; exon_id "ENSE00003625239.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3728 chr11 HAVANA CDS 107525441 107525592 . - 1 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 12; exon_id "ENSE00003625239.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3729 chr11 HAVANA exon 107522299 107522555 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 13; exon_id "ENSE00001611673.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3730 chr11 HAVANA CDS 107522299 107522555 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 13; exon_id "ENSE00001611673.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3731 chr11 HAVANA exon 107510887 107511036 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 14; exon_id "ENSE00001634419.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3732 chr11 HAVANA CDS 107510887 107511036 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 14; exon_id "ENSE00001634419.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3733 chr11 HAVANA exon 107504595 107505215 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 15; exon_id "ENSE00001763825.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3734 chr11 HAVANA CDS 107504661 107505215 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 15; exon_id "ENSE00001763825.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3735 chr11 HAVANA stop_codon 107504658 107504660 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 15; exon_id "ENSE00001763825.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3736 chr11 HAVANA UTR 107565453 107565518 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 1; exon_id "ENSE00001724312.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3737 chr11 HAVANA UTR 107565162 107565214 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 2; exon_id "ENSE00001620533.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3738 chr11 HAVANA UTR 107563547 107563736 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 3; exon_id "ENSE00001769102.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3739 chr11 HAVANA UTR 107562699 107562816 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 4; exon_id "ENSE00001727109.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3740 chr11 HAVANA UTR 107560894 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 5; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3741 chr11 HAVANA UTR 107504595 107504660 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000389568.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-002"; exon_number 15; exon_id "ENSE00001763825.1"; level 2; protein_id "ENSP00000374219.3"; tag "alternative_5_UTR"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS8337.2"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347072.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3742 chr11 HAVANA transcript 107504598 107565701 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3743 chr11 HAVANA exon 107565601 107565701 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 1; exon_id "ENSE00001342472.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3744 chr11 HAVANA exon 107560765 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3745 chr11 HAVANA CDS 107560765 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3746 chr11 HAVANA start_codon 107560891 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3747 chr11 HAVANA exon 107556766 107557003 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3748 chr11 HAVANA CDS 107556766 107557003 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3749 chr11 HAVANA exon 107553847 107553978 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 4; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3750 chr11 HAVANA CDS 107553847 107553978 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 4; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3751 chr11 HAVANA exon 107553108 107553203 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 5; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3752 chr11 HAVANA CDS 107553108 107553203 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 5; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3753 chr11 HAVANA exon 107551808 107551912 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 6; exon_id "ENSE00003539749.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3754 chr11 HAVANA CDS 107551808 107551912 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 6; exon_id "ENSE00003539749.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3755 chr11 HAVANA exon 107532300 107532406 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 7; exon_id "ENSE00003518298.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3756 chr11 HAVANA CDS 107532393 107532406 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 7; exon_id "ENSE00003518298.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3757 chr11 HAVANA stop_codon 107532390 107532392 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 7; exon_id "ENSE00003518298.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3758 chr11 HAVANA exon 107525441 107525592 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 8; exon_id "ENSE00003492929.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3759 chr11 HAVANA exon 107504598 107505215 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 9; exon_id "ENSE00001679524.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3760 chr11 HAVANA UTR 107565601 107565701 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 1; exon_id "ENSE00001342472.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3761 chr11 HAVANA UTR 107560894 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3762 chr11 HAVANA UTR 107532300 107532392 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 7; exon_id "ENSE00003518298.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3763 chr11 HAVANA UTR 107525441 107525592 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 8; exon_id "ENSE00003492929.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3764 chr11 HAVANA UTR 107504598 107505215 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000260318.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-004"; exon_number 9; exon_id "ENSE00001679524.1"; level 2; protein_id "ENSP00000260318.2"; transcript_support_level "1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000347074.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3765 chr11 HAVANA transcript 107504658 107565742 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3766 chr11 HAVANA exon 107565630 107565742 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 1; exon_id "ENSE00002191227.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3767 chr11 HAVANA CDS 107565630 107565632 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 1; exon_id "ENSE00002191227.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3768 chr11 HAVANA start_codon 107565630 107565632 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 1; exon_id "ENSE00002191227.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3769 chr11 HAVANA exon 107560765 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 2; exon_id "ENSE00003463393.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3770 chr11 HAVANA CDS 107560765 107560899 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 2; exon_id "ENSE00003463393.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3771 chr11 HAVANA exon 107556766 107557003 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3772 chr11 HAVANA CDS 107556766 107557003 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3773 chr11 HAVANA exon 107553847 107553978 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 4; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3774 chr11 HAVANA CDS 107553847 107553978 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 4; exon_id "ENSE00000930433.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3775 chr11 HAVANA exon 107553108 107553203 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 5; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3776 chr11 HAVANA CDS 107553108 107553203 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 5; exon_id "ENSE00003685485.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3777 chr11 HAVANA exon 107551808 107551912 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 6; exon_id "ENSE00003539749.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3778 chr11 HAVANA CDS 107551808 107551912 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 6; exon_id "ENSE00003539749.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3779 chr11 HAVANA exon 107549753 107549823 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 7; exon_id "ENSE00003692677.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3780 chr11 HAVANA CDS 107549753 107549823 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 7; exon_id "ENSE00003692677.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3781 chr11 HAVANA exon 107532300 107532406 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 8; exon_id "ENSE00003499830.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3782 chr11 HAVANA CDS 107532300 107532406 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 8; exon_id "ENSE00003499830.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3783 chr11 HAVANA exon 107525441 107525592 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 9; exon_id "ENSE00003625239.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3784 chr11 HAVANA CDS 107525441 107525592 . - 1 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 9; exon_id "ENSE00003625239.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3785 chr11 HAVANA exon 107522299 107522555 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 10; exon_id "ENSE00001611673.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3786 chr11 HAVANA CDS 107522299 107522555 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 10; exon_id "ENSE00001611673.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3787 chr11 HAVANA exon 107510887 107511036 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 11; exon_id "ENSE00001634419.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3788 chr11 HAVANA CDS 107510887 107511036 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 11; exon_id "ENSE00001634419.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3789 chr11 HAVANA exon 107504658 107505215 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 12; exon_id "ENSE00001727797.2"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3790 chr11 HAVANA CDS 107504661 107505215 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 12; exon_id "ENSE00001727797.2"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3791 chr11 HAVANA stop_codon 107504658 107504660 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 12; exon_id "ENSE00001727797.2"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3792 chr11 HAVANA UTR 107565633 107565742 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 1; exon_id "ENSE00002191227.1"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3793 chr11 HAVANA UTR 107504658 107504660 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000417449.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH8-005"; exon_number 12; exon_id "ENSE00001727797.2"; level 2; protein_id "ENSP00000397673.2"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_1"; tag "CCDS"; ccdsid "CCDS73376.1"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389113.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3794 chr11 HAVANA transcript 107532314 107565734 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3795 chr11 HAVANA exon 107565601 107565734 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 1; exon_id "ENSE00001696017.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3796 chr11 HAVANA exon 107560765 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3797 chr11 HAVANA CDS 107560765 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3798 chr11 HAVANA start_codon 107560891 107560893 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3799 chr11 HAVANA exon 107556766 107557003 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3800 chr11 HAVANA CDS 107556766 107557003 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 3; exon_id "ENSE00003496144.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3801 chr11 HAVANA exon 107553847 107553973 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 4; exon_id "ENSE00002201598.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3802 chr11 HAVANA CDS 107553909 107553973 . - 2 gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 4; exon_id "ENSE00002201598.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3803 chr11 HAVANA stop_codon 107553906 107553908 . - 0 gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 4; exon_id "ENSE00002201598.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3804 chr11 HAVANA exon 107553108 107553203 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 5; exon_id "ENSE00003477936.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3805 chr11 HAVANA exon 107551808 107551912 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 6; exon_id "ENSE00003464858.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3806 chr11 HAVANA exon 107549753 107549823 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 7; exon_id "ENSE00003663331.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3807 chr11 HAVANA exon 107532314 107532406 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 8; exon_id "ENSE00002161338.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3808 chr11 HAVANA UTR 107565601 107565734 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 1; exon_id "ENSE00001696017.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3809 chr11 HAVANA UTR 107560894 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 2; exon_id "ENSE00003647741.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3810 chr11 HAVANA UTR 107553847 107553908 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 4; exon_id "ENSE00002201598.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3811 chr11 HAVANA UTR 107553108 107553203 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 5; exon_id "ENSE00003477936.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3812 chr11 HAVANA UTR 107551808 107551912 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 6; exon_id "ENSE00003464858.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3813 chr11 HAVANA UTR 107549753 107549823 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 7; exon_id "ENSE00003663331.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3814 chr11 HAVANA UTR 107532314 107532406 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000393100.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH8-006"; exon_number 8; exon_id "ENSE00002161338.1"; level 2; protein_id "ENSP00000376812.3"; transcript_support_level "5"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389114.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3815 chr11 HAVANA transcript 107553857 107565733 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000530933.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH8-007"; level 2; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389115.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3816 chr11 HAVANA exon 107565630 107565733 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000530933.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH8-007"; exon_number 1; exon_id "ENSE00002190637.1"; level 2; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389115.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3817 chr11 HAVANA exon 107560765 107560899 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000530933.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH8-007"; exon_number 2; exon_id "ENSE00003565100.1"; level 2; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389115.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3818 chr11 HAVANA exon 107556766 107557003 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000530933.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH8-007"; exon_number 3; exon_id "ENSE00003592519.1"; level 2; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389115.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3819 chr11 HAVANA exon 107553857 107553973 . - . gene_id "ENSG00000137760.14"; transcript_id "ENST00000530933.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH8"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH8-007"; exon_number 4; exon_id "ENSE00002192708.1"; level 2; tag "mRNA_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000157008.3"; havana_transcript "OTTHUMT00000389115.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3820 chr6 HAVANA transcript 117288300 117425855 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3821 chr6 HAVANA exon 117425534 117425855 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 1; exon_id "ENSE00001013392.3"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3822 chr6 HAVANA CDS 117425534 117425656 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 1; exon_id "ENSE00001013392.3"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3823 chr6 HAVANA start_codon 117425654 117425656 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 1; exon_id "ENSE00001013392.3"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3824 chr6 HAVANA exon 117418462 117418506 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 2; exon_id "ENSE00000442427.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3825 chr6 HAVANA CDS 117418462 117418506 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 2; exon_id "ENSE00000442427.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3826 chr6 HAVANA exon 117416258 117416317 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 3; exon_id "ENSE00000762772.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3827 chr6 HAVANA CDS 117416258 117416317 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 3; exon_id "ENSE00000762772.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3828 chr6 HAVANA exon 117409582 117409642 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 4; exon_id "ENSE00000442429.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3829 chr6 HAVANA CDS 117409582 117409642 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 4; exon_id "ENSE00000442429.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3830 chr6 HAVANA exon 117404280 117404428 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 5; exon_id "ENSE00000762770.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3831 chr6 HAVANA CDS 117404280 117404428 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 5; exon_id "ENSE00000762770.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3832 chr6 HAVANA exon 117403139 117403277 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 6; exon_id "ENSE00000442431.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3833 chr6 HAVANA CDS 117403139 117403277 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 6; exon_id "ENSE00000442431.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3834 chr6 HAVANA exon 117396915 117397116 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 7; exon_id "ENSE00000762768.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3835 chr6 HAVANA CDS 117396915 117397116 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 7; exon_id "ENSE00000762768.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3836 chr6 HAVANA exon 117396188 117396264 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 8; exon_id "ENSE00000762767.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3837 chr6 HAVANA CDS 117396188 117396264 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 8; exon_id "ENSE00000762767.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3838 chr6 HAVANA exon 117394616 117394738 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 9; exon_id "ENSE00000762766.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3839 chr6 HAVANA CDS 117394616 117394738 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 9; exon_id "ENSE00000762766.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3840 chr6 HAVANA exon 117394162 117394346 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 10; exon_id "ENSE00000442435.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3841 chr6 HAVANA CDS 117394162 117394346 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 10; exon_id "ENSE00000442435.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3842 chr6 HAVANA exon 117393224 117393321 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 11; exon_id "ENSE00000442436.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3843 chr6 HAVANA CDS 117393224 117393321 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 11; exon_id "ENSE00000442436.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3844 chr6 HAVANA exon 117389350 117389846 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 12; exon_id "ENSE00000762762.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3845 chr6 HAVANA CDS 117389350 117389846 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 12; exon_id "ENSE00000762762.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3846 chr6 HAVANA exon 117387780 117388034 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 13; exon_id "ENSE00000442438.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3847 chr6 HAVANA CDS 117387780 117388034 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 13; exon_id "ENSE00000442438.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3848 chr6 HAVANA exon 117386889 117386999 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 14; exon_id "ENSE00000762760.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3849 chr6 HAVANA CDS 117386889 117386999 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 14; exon_id "ENSE00000762760.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3850 chr6 HAVANA exon 117385683 117385861 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 15; exon_id "ENSE00000762759.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3851 chr6 HAVANA CDS 117385683 117385861 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 15; exon_id "ENSE00000762759.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3852 chr6 HAVANA exon 117383317 117383508 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 16; exon_id "ENSE00000762758.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3853 chr6 HAVANA CDS 117383317 117383508 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 16; exon_id "ENSE00000762758.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3854 chr6 HAVANA exon 117379059 117379159 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 17; exon_id "ENSE00000762757.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3855 chr6 HAVANA CDS 117379059 117379159 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 17; exon_id "ENSE00000762757.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3856 chr6 HAVANA exon 117366076 117366290 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 18; exon_id "ENSE00000442443.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3857 chr6 HAVANA CDS 117366076 117366290 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 18; exon_id "ENSE00000442443.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3858 chr6 HAVANA exon 117365581 117365741 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 19; exon_id "ENSE00000442444.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3859 chr6 HAVANA CDS 117365581 117365741 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 19; exon_id "ENSE00000442444.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3860 chr6 HAVANA exon 117365060 117365204 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 20; exon_id "ENSE00000442445.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3861 chr6 HAVANA CDS 117365060 117365204 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 20; exon_id "ENSE00000442445.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3862 chr6 HAVANA exon 117362603 117362865 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 21; exon_id "ENSE00000762730.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3863 chr6 HAVANA CDS 117362603 117362865 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 21; exon_id "ENSE00000762730.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3864 chr6 HAVANA exon 117360342 117360405 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 22; exon_id "ENSE00000442447.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3865 chr6 HAVANA CDS 117360342 117360405 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 22; exon_id "ENSE00000442447.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3866 chr6 HAVANA exon 117359809 117360011 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 23; exon_id "ENSE00000762724.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3867 chr6 HAVANA CDS 117359809 117360011 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 23; exon_id "ENSE00000762724.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3868 chr6 HAVANA exon 117357804 117358009 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 24; exon_id "ENSE00000442449.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3869 chr6 HAVANA CDS 117357804 117358009 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 24; exon_id "ENSE00000442449.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3870 chr6 HAVANA exon 117356629 117356915 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 25; exon_id "ENSE00001209857.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3871 chr6 HAVANA CDS 117356629 117356915 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 25; exon_id "ENSE00001209857.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3872 chr6 HAVANA exon 117352990 117353169 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 26; exon_id "ENSE00000442451.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3873 chr6 HAVANA CDS 117352990 117353169 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 26; exon_id "ENSE00000442451.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3874 chr6 HAVANA exon 117344060 117344262 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 27; exon_id "ENSE00000762716.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3875 chr6 HAVANA CDS 117344060 117344262 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 27; exon_id "ENSE00000762716.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3876 chr6 HAVANA exon 117342400 117342544 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 28; exon_id "ENSE00000762714.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3877 chr6 HAVANA CDS 117342400 117342544 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 28; exon_id "ENSE00000762714.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3878 chr6 HAVANA exon 117341400 117341632 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 29; exon_id "ENSE00000442454.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3879 chr6 HAVANA CDS 117341400 117341632 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 29; exon_id "ENSE00000442454.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3880 chr6 HAVANA exon 117341135 117341311 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 30; exon_id "ENSE00000442455.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3881 chr6 HAVANA CDS 117341135 117341311 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 30; exon_id "ENSE00000442455.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3882 chr6 HAVANA exon 117337172 117337340 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 31; exon_id "ENSE00000762708.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3883 chr6 HAVANA CDS 117337172 117337340 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 31; exon_id "ENSE00000762708.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3884 chr6 HAVANA exon 117329329 117329446 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 32; exon_id "ENSE00000762706.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3885 chr6 HAVANA CDS 117329329 117329446 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 32; exon_id "ENSE00000762706.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3886 chr6 HAVANA exon 117326224 117326414 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 33; exon_id "ENSE00000762704.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3887 chr6 HAVANA CDS 117326224 117326414 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 33; exon_id "ENSE00000762704.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3888 chr6 HAVANA exon 117324332 117324415 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 34; exon_id "ENSE00000762702.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3889 chr6 HAVANA CDS 117324332 117324415 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 34; exon_id "ENSE00000762702.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3890 chr6 HAVANA exon 117321259 117321394 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 35; exon_id "ENSE00000442460.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3891 chr6 HAVANA CDS 117321259 117321394 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 35; exon_id "ENSE00000442460.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3892 chr6 HAVANA exon 117319868 117320030 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 36; exon_id "ENSE00003478828.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3893 chr6 HAVANA CDS 117319868 117320030 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 36; exon_id "ENSE00003478828.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3894 chr6 HAVANA exon 117318188 117318252 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 37; exon_id "ENSE00000762695.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3895 chr6 HAVANA CDS 117318188 117318252 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 37; exon_id "ENSE00000762695.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3896 chr6 HAVANA exon 117317143 117317272 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 38; exon_id "ENSE00000762693.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3897 chr6 HAVANA CDS 117317143 117317272 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 38; exon_id "ENSE00000762693.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3898 chr6 HAVANA exon 117311020 117311117 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 39; exon_id "ENSE00000442464.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3899 chr6 HAVANA CDS 117311020 117311117 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 39; exon_id "ENSE00000442464.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3900 chr6 HAVANA exon 117310081 117310281 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 40; exon_id "ENSE00000762689.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3901 chr6 HAVANA CDS 117310081 117310281 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 40; exon_id "ENSE00000762689.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3902 chr6 HAVANA exon 117308794 117308928 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 41; exon_id "ENSE00000442466.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3903 chr6 HAVANA CDS 117308794 117308928 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 41; exon_id "ENSE00000442466.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3904 chr6 HAVANA exon 117300974 117301137 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 42; exon_id "ENSE00000442467.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3905 chr6 HAVANA CDS 117300974 117301137 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 42; exon_id "ENSE00000442467.1"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3906 chr6 HAVANA exon 117288300 117288802 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 43; exon_id "ENSE00001447303.3"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3907 chr6 HAVANA CDS 117288495 117288802 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 43; exon_id "ENSE00001447303.3"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3908 chr6 HAVANA stop_codon 117288492 117288494 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 43; exon_id "ENSE00001447303.3"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3909 chr6 HAVANA UTR 117425657 117425855 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 1; exon_id "ENSE00001013392.3"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3910 chr6 HAVANA UTR 117288300 117288494 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368508.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-001"; exon_number 43; exon_id "ENSE00001447303.3"; level 2; protein_id "ENSP00000357494.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS5116.1"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043464.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3911 chr6 HAVANA transcript 117288300 117425855 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3912 chr6 HAVANA exon 117425534 117425855 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 1; exon_id "ENSE00001013392.3"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3913 chr6 HAVANA CDS 117425534 117425656 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 1; exon_id "ENSE00001013392.3"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3914 chr6 HAVANA start_codon 117425654 117425656 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 1; exon_id "ENSE00001013392.3"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3915 chr6 HAVANA exon 117418462 117418506 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 2; exon_id "ENSE00000442427.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3916 chr6 HAVANA CDS 117418462 117418506 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 2; exon_id "ENSE00000442427.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3917 chr6 HAVANA exon 117416258 117416317 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 3; exon_id "ENSE00000762772.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3918 chr6 HAVANA CDS 117416258 117416317 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 3; exon_id "ENSE00000762772.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3919 chr6 HAVANA exon 117414519 117414545 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 4; exon_id "ENSE00001447301.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3920 chr6 HAVANA CDS 117414519 117414545 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 4; exon_id "ENSE00001447301.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3921 chr6 HAVANA exon 117409582 117409642 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 5; exon_id "ENSE00000442429.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3922 chr6 HAVANA CDS 117409582 117409642 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 5; exon_id "ENSE00000442429.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3923 chr6 HAVANA exon 117404280 117404428 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 6; exon_id "ENSE00000762770.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3924 chr6 HAVANA CDS 117404280 117404428 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 6; exon_id "ENSE00000762770.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3925 chr6 HAVANA exon 117403139 117403277 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 7; exon_id "ENSE00000442431.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3926 chr6 HAVANA CDS 117403139 117403277 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 7; exon_id "ENSE00000442431.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3927 chr6 HAVANA exon 117396915 117397116 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 8; exon_id "ENSE00000762768.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3928 chr6 HAVANA CDS 117396915 117397116 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 8; exon_id "ENSE00000762768.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3929 chr6 HAVANA exon 117396188 117396264 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 9; exon_id "ENSE00000762767.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3930 chr6 HAVANA CDS 117396188 117396264 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 9; exon_id "ENSE00000762767.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3931 chr6 HAVANA exon 117394616 117394738 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 10; exon_id "ENSE00000762766.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3932 chr6 HAVANA CDS 117394616 117394738 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 10; exon_id "ENSE00000762766.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3933 chr6 HAVANA exon 117394162 117394346 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 11; exon_id "ENSE00000442435.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3934 chr6 HAVANA CDS 117394162 117394346 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 11; exon_id "ENSE00000442435.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3935 chr6 HAVANA exon 117393224 117393321 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 12; exon_id "ENSE00000442436.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3936 chr6 HAVANA CDS 117393224 117393321 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 12; exon_id "ENSE00000442436.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3937 chr6 HAVANA exon 117389350 117389846 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 13; exon_id "ENSE00000762762.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3938 chr6 HAVANA CDS 117389350 117389846 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 13; exon_id "ENSE00000762762.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3939 chr6 HAVANA exon 117387780 117387992 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 14; exon_id "ENSE00001447300.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3940 chr6 HAVANA CDS 117387780 117387992 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 14; exon_id "ENSE00001447300.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3941 chr6 HAVANA exon 117386889 117386999 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 15; exon_id "ENSE00000762760.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3942 chr6 HAVANA CDS 117386889 117386999 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 15; exon_id "ENSE00000762760.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3943 chr6 HAVANA exon 117385683 117385861 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 16; exon_id "ENSE00000762759.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3944 chr6 HAVANA CDS 117385683 117385861 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 16; exon_id "ENSE00000762759.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3945 chr6 HAVANA exon 117383317 117383508 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 17; exon_id "ENSE00000762758.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3946 chr6 HAVANA CDS 117383317 117383508 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 17; exon_id "ENSE00000762758.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3947 chr6 HAVANA exon 117379059 117379159 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 18; exon_id "ENSE00000762757.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3948 chr6 HAVANA CDS 117379059 117379159 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 18; exon_id "ENSE00000762757.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3949 chr6 HAVANA exon 117366076 117366290 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 19; exon_id "ENSE00000442443.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3950 chr6 HAVANA CDS 117366076 117366290 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 19; exon_id "ENSE00000442443.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3951 chr6 HAVANA exon 117365581 117365741 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 20; exon_id "ENSE00000442444.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3952 chr6 HAVANA CDS 117365581 117365741 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 20; exon_id "ENSE00000442444.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3953 chr6 HAVANA exon 117365060 117365204 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 21; exon_id "ENSE00000442445.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3954 chr6 HAVANA CDS 117365060 117365204 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 21; exon_id "ENSE00000442445.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3955 chr6 HAVANA exon 117362603 117362865 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 22; exon_id "ENSE00000762730.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3956 chr6 HAVANA CDS 117362603 117362865 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 22; exon_id "ENSE00000762730.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3957 chr6 HAVANA exon 117360342 117360405 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 23; exon_id "ENSE00000442447.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3958 chr6 HAVANA CDS 117360342 117360405 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 23; exon_id "ENSE00000442447.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3959 chr6 HAVANA exon 117359809 117360011 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 24; exon_id "ENSE00000762724.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3960 chr6 HAVANA CDS 117359809 117360011 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 24; exon_id "ENSE00000762724.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3961 chr6 HAVANA exon 117357804 117358009 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 25; exon_id "ENSE00000442449.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3962 chr6 HAVANA CDS 117357804 117358009 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 25; exon_id "ENSE00000442449.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3963 chr6 HAVANA exon 117356629 117356915 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 26; exon_id "ENSE00001209857.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3964 chr6 HAVANA CDS 117356629 117356915 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 26; exon_id "ENSE00001209857.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3965 chr6 HAVANA exon 117352990 117353166 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 27; exon_id "ENSE00001447299.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3966 chr6 HAVANA CDS 117352990 117353166 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 27; exon_id "ENSE00001447299.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3967 chr6 HAVANA exon 117344060 117344262 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 28; exon_id "ENSE00000762716.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3968 chr6 HAVANA CDS 117344060 117344262 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 28; exon_id "ENSE00000762716.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3969 chr6 HAVANA exon 117342400 117342544 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 29; exon_id "ENSE00000762714.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3970 chr6 HAVANA CDS 117342400 117342544 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 29; exon_id "ENSE00000762714.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3971 chr6 HAVANA exon 117341400 117341632 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 30; exon_id "ENSE00000442454.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3972 chr6 HAVANA CDS 117341400 117341632 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 30; exon_id "ENSE00000442454.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3973 chr6 HAVANA exon 117341135 117341311 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 31; exon_id "ENSE00000442455.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3974 chr6 HAVANA CDS 117341135 117341311 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 31; exon_id "ENSE00000442455.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3975 chr6 HAVANA exon 117337172 117337340 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 32; exon_id "ENSE00000762708.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3976 chr6 HAVANA CDS 117337172 117337340 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 32; exon_id "ENSE00000762708.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3977 chr6 HAVANA exon 117329329 117329446 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 33; exon_id "ENSE00000762706.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3978 chr6 HAVANA CDS 117329329 117329446 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 33; exon_id "ENSE00000762706.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3979 chr6 HAVANA exon 117326224 117326414 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 34; exon_id "ENSE00000762704.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3980 chr6 HAVANA CDS 117326224 117326414 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 34; exon_id "ENSE00000762704.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3981 chr6 HAVANA exon 117324332 117324415 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 35; exon_id "ENSE00000762702.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3982 chr6 HAVANA CDS 117324332 117324415 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 35; exon_id "ENSE00000762702.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3983 chr6 HAVANA exon 117321259 117321394 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 36; exon_id "ENSE00000442460.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3984 chr6 HAVANA CDS 117321259 117321394 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 36; exon_id "ENSE00000442460.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3985 chr6 HAVANA exon 117319868 117320030 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 37; exon_id "ENSE00003478828.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3986 chr6 HAVANA CDS 117319868 117320030 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 37; exon_id "ENSE00003478828.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3987 chr6 HAVANA exon 117318188 117318252 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 38; exon_id "ENSE00000762695.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3988 chr6 HAVANA CDS 117318188 117318252 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 38; exon_id "ENSE00000762695.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3989 chr6 HAVANA exon 117317143 117317272 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 39; exon_id "ENSE00000762693.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3990 chr6 HAVANA CDS 117317143 117317272 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 39; exon_id "ENSE00000762693.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3991 chr6 HAVANA exon 117311020 117311117 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 40; exon_id "ENSE00000442464.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3992 chr6 HAVANA CDS 117311020 117311117 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 40; exon_id "ENSE00000442464.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3993 chr6 HAVANA exon 117310081 117310281 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 41; exon_id "ENSE00000762689.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3994 chr6 HAVANA CDS 117310081 117310281 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 41; exon_id "ENSE00000762689.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3995 chr6 HAVANA exon 117308794 117308928 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 42; exon_id "ENSE00000442466.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3996 chr6 HAVANA CDS 117308794 117308928 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 42; exon_id "ENSE00000442466.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3997 chr6 HAVANA exon 117300974 117301137 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 43; exon_id "ENSE00000442467.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3998 chr6 HAVANA CDS 117300974 117301137 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 43; exon_id "ENSE00000442467.1"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
3999 chr6 HAVANA exon 117288300 117288802 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 44; exon_id "ENSE00001447303.3"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4000 chr6 HAVANA CDS 117288495 117288802 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 44; exon_id "ENSE00001447303.3"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4001 chr6 HAVANA stop_codon 117288492 117288494 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 44; exon_id "ENSE00001447303.3"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4002 chr6 HAVANA UTR 117425657 117425855 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 1; exon_id "ENSE00001013392.3"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4003 chr6 HAVANA UTR 117288300 117288494 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000368507.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-002"; exon_number 44; exon_id "ENSE00001447303.3"; level 2; protein_id "ENSP00000357493.3"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043465.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4004 chr6 HAVANA transcript 117328420 117337340 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4005 chr6 HAVANA exon 117337172 117337340 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; exon_number 1; exon_id "ENSE00000762708.1"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4006 chr6 HAVANA CDS 117337172 117337340 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; exon_number 1; exon_id "ENSE00000762708.1"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4007 chr6 HAVANA exon 117329329 117329446 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; exon_number 2; exon_id "ENSE00000762706.1"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4008 chr6 HAVANA CDS 117329329 117329446 . - 2 gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; exon_number 2; exon_id "ENSE00000762706.1"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4009 chr6 HAVANA exon 117328420 117328813 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; exon_number 3; exon_id "ENSE00001549475.2"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4010 chr6 HAVANA CDS 117328810 117328813 . - 1 gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; exon_number 3; exon_id "ENSE00001549475.2"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4011 chr6 HAVANA stop_codon 117328807 117328809 . - 0 gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; exon_number 3; exon_id "ENSE00001549475.2"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4012 chr6 HAVANA UTR 117328420 117328809 . - . gene_id "ENSG00000047936.10"; transcript_id "ENST00000403284.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ROS1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ROS1-003"; exon_number 3; exon_id "ENSE00001549475.2"; level 2; protein_id "ENSP00000384647.2"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000016188.1"; havana_transcript "OTTHUMT00000043466.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4013 chr2 HAVANA transcript 29192774 29921566 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4014 chr2 HAVANA exon 29919993 29921566 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 1; exon_id "ENSE00001794937.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4015 chr2 HAVANA CDS 29919993 29920659 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 1; exon_id "ENSE00001794937.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4016 chr2 HAVANA start_codon 29920657 29920659 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 1; exon_id "ENSE00001794937.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4017 chr2 HAVANA exon 29717578 29717697 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 2; exon_id "ENSE00001313023.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4018 chr2 HAVANA CDS 29717578 29717697 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 2; exon_id "ENSE00001313023.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4019 chr2 HAVANA exon 29694850 29695014 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 3; exon_id "ENSE00001290865.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4020 chr2 HAVANA CDS 29694850 29695014 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 3; exon_id "ENSE00001290865.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4021 chr2 HAVANA exon 29531915 29532116 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 4; exon_id "ENSE00001313033.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4022 chr2 HAVANA CDS 29531915 29532116 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 4; exon_id "ENSE00001313033.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4023 chr2 HAVANA exon 29383732 29383859 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 5; exon_id "ENSE00001255693.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4024 chr2 HAVANA CDS 29383732 29383859 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 5; exon_id "ENSE00001255693.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4025 chr2 HAVANA exon 29328350 29328481 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 6; exon_id "ENSE00001255673.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4026 chr2 HAVANA CDS 29328350 29328481 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 6; exon_id "ENSE00001255673.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4027 chr2 HAVANA exon 29320751 29320882 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 7; exon_id "ENSE00001255668.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4028 chr2 HAVANA CDS 29320751 29320882 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 7; exon_id "ENSE00001255668.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4029 chr2 HAVANA exon 29318304 29318404 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 8; exon_id "ENSE00003584441.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4030 chr2 HAVANA CDS 29318304 29318404 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 8; exon_id "ENSE00003584441.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4031 chr2 HAVANA exon 29296888 29297057 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 9; exon_id "ENSE00003638382.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4032 chr2 HAVANA CDS 29296888 29297057 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 9; exon_id "ENSE00003638382.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4033 chr2 HAVANA exon 29275402 29275496 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 10; exon_id "ENSE00001255635.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4034 chr2 HAVANA CDS 29275402 29275496 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 10; exon_id "ENSE00001255635.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4035 chr2 HAVANA exon 29275099 29275227 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 11; exon_id "ENSE00001255625.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4036 chr2 HAVANA CDS 29275099 29275227 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 11; exon_id "ENSE00001255625.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4037 chr2 HAVANA exon 29251105 29251267 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 12; exon_id "ENSE00001329399.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4038 chr2 HAVANA CDS 29251105 29251267 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 12; exon_id "ENSE00001329399.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4039 chr2 HAVANA exon 29239680 29239830 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 13; exon_id "ENSE00001154433.2"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4040 chr2 HAVANA CDS 29239680 29239830 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 13; exon_id "ENSE00001154433.2"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4041 chr2 HAVANA exon 29233565 29233696 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 14; exon_id "ENSE00001154428.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4042 chr2 HAVANA CDS 29233565 29233696 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 14; exon_id "ENSE00001154428.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4043 chr2 HAVANA exon 29232304 29232448 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 15; exon_id "ENSE00001154426.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4044 chr2 HAVANA CDS 29232304 29232448 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 15; exon_id "ENSE00001154426.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4045 chr2 HAVANA exon 29228884 29229066 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 16; exon_id "ENSE00001255591.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4046 chr2 HAVANA CDS 29228884 29229066 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 16; exon_id "ENSE00001255591.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4047 chr2 HAVANA exon 29227574 29227672 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 17; exon_id "ENSE00001154420.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4048 chr2 HAVANA CDS 29227574 29227672 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 17; exon_id "ENSE00001154420.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4049 chr2 HAVANA exon 29226922 29227074 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 18; exon_id "ENSE00001154417.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4050 chr2 HAVANA CDS 29226922 29227074 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 18; exon_id "ENSE00001154417.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4051 chr2 HAVANA exon 29225461 29225565 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 19; exon_id "ENSE00001154411.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4052 chr2 HAVANA CDS 29225461 29225565 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 19; exon_id "ENSE00001154411.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4053 chr2 HAVANA exon 29223342 29223528 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 20; exon_id "ENSE00001154407.3"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4054 chr2 HAVANA CDS 29223342 29223528 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 20; exon_id "ENSE00001154407.3"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4055 chr2 HAVANA exon 29222517 29222607 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 21; exon_id "ENSE00001154403.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4056 chr2 HAVANA CDS 29222517 29222607 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 21; exon_id "ENSE00001154403.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4057 chr2 HAVANA exon 29222344 29222408 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 22; exon_id "ENSE00001154399.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4058 chr2 HAVANA CDS 29222344 29222408 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 22; exon_id "ENSE00001154399.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4059 chr2 HAVANA exon 29220706 29220835 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 23; exon_id "ENSE00001154395.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4060 chr2 HAVANA CDS 29220706 29220835 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 23; exon_id "ENSE00001154395.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4061 chr2 HAVANA exon 29213984 29214081 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 24; exon_id "ENSE00001154390.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4062 chr2 HAVANA CDS 29213984 29214081 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 24; exon_id "ENSE00001154390.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4063 chr2 HAVANA exon 29209786 29209878 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 25; exon_id "ENSE00001154381.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4064 chr2 HAVANA CDS 29209786 29209878 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 25; exon_id "ENSE00001154381.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4065 chr2 HAVANA exon 29207171 29207272 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 26; exon_id "ENSE00001682043.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4066 chr2 HAVANA CDS 29207171 29207272 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 26; exon_id "ENSE00001682043.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4067 chr2 HAVANA exon 29197542 29197676 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 27; exon_id "ENSE00001154367.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4068 chr2 HAVANA CDS 29197542 29197676 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 27; exon_id "ENSE00001154367.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4069 chr2 HAVANA exon 29196770 29196860 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 28; exon_id "ENSE00001154361.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4070 chr2 HAVANA CDS 29196770 29196860 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 28; exon_id "ENSE00001154361.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4071 chr2 HAVANA exon 29192774 29193922 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 29; exon_id "ENSE00001140354.4"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4072 chr2 HAVANA CDS 29193227 29193922 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 29; exon_id "ENSE00001140354.4"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4073 chr2 HAVANA stop_codon 29193224 29193226 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 29; exon_id "ENSE00001140354.4"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4074 chr2 HAVANA UTR 29920660 29921566 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 1; exon_id "ENSE00001794937.1"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4075 chr2 HAVANA UTR 29192774 29193226 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000389048.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-001"; exon_number 29; exon_id "ENSE00001140354.4"; level 2; protein_id "ENSP00000373700.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_2"; tag "CCDS"; ccdsid "CCDS33172.1"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324994.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4076 chr2 HAVANA transcript 29220870 29223394 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4077 chr2 HAVANA exon 29223342 29223394 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 1; exon_id "ENSE00001735043.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4078 chr2 HAVANA CDS 29223342 29223394 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 1; exon_id "ENSE00001735043.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4079 chr2 HAVANA exon 29222517 29222607 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 2; exon_id "ENSE00001154403.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4080 chr2 HAVANA CDS 29222517 29222607 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 2; exon_id "ENSE00001154403.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4081 chr2 HAVANA exon 29222344 29222408 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 3; exon_id "ENSE00001154399.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4082 chr2 HAVANA CDS 29222344 29222408 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 3; exon_id "ENSE00001154399.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4083 chr2 HAVANA exon 29220870 29221237 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 4; exon_id "ENSE00001604749.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4084 chr2 HAVANA CDS 29220991 29221237 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 4; exon_id "ENSE00001604749.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4085 chr2 HAVANA stop_codon 29220988 29220990 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 4; exon_id "ENSE00001604749.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4086 chr2 HAVANA UTR 29220870 29220990 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000453137.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-002"; exon_number 4; exon_id "ENSE00001604749.1"; level 2; protein_id "ENSP00000387488.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324995.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4087 chr2 HAVANA transcript 29286410 29319211 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000498037.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALK-003"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324996.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4088 chr2 HAVANA exon 29319111 29319211 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000498037.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALK-003"; exon_number 1; exon_id "ENSE00001877434.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324996.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4089 chr2 HAVANA exon 29318304 29318404 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000498037.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALK-003"; exon_number 2; exon_id "ENSE00003461635.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324996.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4090 chr2 HAVANA exon 29296888 29297057 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000498037.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALK-003"; exon_number 3; exon_id "ENSE00003458866.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324996.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4091 chr2 HAVANA exon 29286754 29286834 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000498037.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALK-003"; exon_number 4; exon_id "ENSE00001861074.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324996.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4092 chr2 HAVANA exon 29286410 29286516 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000498037.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALK-003"; exon_number 5; exon_id "ENSE00001892473.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152034.1"; havana_transcript "OTTHUMT00000324996.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4093 chr2 ENSEMBL transcript 29192777 29224730 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4094 chr2 ENSEMBL exon 29224679 29224730 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 1; exon_id "ENSE00003721091.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4095 chr2 ENSEMBL CDS 29224679 29224730 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 1; exon_id "ENSE00003721091.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4096 chr2 ENSEMBL start_codon 29224728 29224730 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 1; exon_id "ENSE00003721091.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4097 chr2 ENSEMBL exon 29223342 29223528 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 2; exon_id "ENSE00001154407.3"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4098 chr2 ENSEMBL CDS 29223342 29223528 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 2; exon_id "ENSE00001154407.3"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4099 chr2 ENSEMBL exon 29222517 29222607 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 3; exon_id "ENSE00001154403.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4100 chr2 ENSEMBL CDS 29222517 29222607 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 3; exon_id "ENSE00001154403.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4101 chr2 ENSEMBL exon 29222344 29222408 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 4; exon_id "ENSE00001154399.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4102 chr2 ENSEMBL CDS 29222344 29222408 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 4; exon_id "ENSE00001154399.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4103 chr2 ENSEMBL exon 29220706 29220835 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 5; exon_id "ENSE00001154395.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4104 chr2 ENSEMBL CDS 29220706 29220835 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 5; exon_id "ENSE00001154395.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4105 chr2 ENSEMBL exon 29213984 29214081 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 6; exon_id "ENSE00001154390.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4106 chr2 ENSEMBL CDS 29213984 29214081 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 6; exon_id "ENSE00001154390.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4107 chr2 ENSEMBL exon 29209786 29209878 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 7; exon_id "ENSE00001154381.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4108 chr2 ENSEMBL CDS 29209786 29209878 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 7; exon_id "ENSE00001154381.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4109 chr2 ENSEMBL exon 29207171 29207272 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 8; exon_id "ENSE00001682043.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4110 chr2 ENSEMBL CDS 29207171 29207272 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 8; exon_id "ENSE00001682043.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4111 chr2 ENSEMBL exon 29197542 29197676 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 9; exon_id "ENSE00001154367.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4112 chr2 ENSEMBL CDS 29197542 29197676 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 9; exon_id "ENSE00001154367.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4113 chr2 ENSEMBL exon 29196770 29196860 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 10; exon_id "ENSE00001154361.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4114 chr2 ENSEMBL CDS 29196770 29196860 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 10; exon_id "ENSE00001154361.1"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4115 chr2 ENSEMBL exon 29192777 29193922 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 11; exon_id "ENSE00001691879.2"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4116 chr2 ENSEMBL CDS 29193227 29193922 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 11; exon_id "ENSE00001691879.2"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4117 chr2 ENSEMBL stop_codon 29193224 29193226 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 11; exon_id "ENSE00001691879.2"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4118 chr2 ENSEMBL UTR 29192777 29193226 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000431873.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-201"; exon_number 11; exon_id "ENSE00001691879.2"; level 3; protein_id "ENSP00000414027.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4119 chr2 ENSEMBL transcript 29192777 29717700 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4120 chr2 ENSEMBL exon 29717578 29717700 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 1; exon_id "ENSE00001783577.2"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4121 chr2 ENSEMBL exon 29694850 29695014 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 2; exon_id "ENSE00003713391.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4122 chr2 ENSEMBL exon 29531915 29532116 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 3; exon_id "ENSE00003717956.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4123 chr2 ENSEMBL CDS 29531915 29531937 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 3; exon_id "ENSE00003717956.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4124 chr2 ENSEMBL start_codon 29531935 29531937 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 3; exon_id "ENSE00003717956.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4125 chr2 ENSEMBL exon 29383732 29383859 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 4; exon_id "ENSE00001255693.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4126 chr2 ENSEMBL CDS 29383732 29383859 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 4; exon_id "ENSE00001255693.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4127 chr2 ENSEMBL exon 29328350 29328481 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 5; exon_id "ENSE00001255673.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4128 chr2 ENSEMBL CDS 29328350 29328481 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 5; exon_id "ENSE00001255673.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4129 chr2 ENSEMBL exon 29320751 29320882 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 6; exon_id "ENSE00001255668.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4130 chr2 ENSEMBL CDS 29320751 29320882 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 6; exon_id "ENSE00001255668.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4131 chr2 ENSEMBL exon 29318304 29318404 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 7; exon_id "ENSE00003584441.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4132 chr2 ENSEMBL CDS 29318304 29318404 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 7; exon_id "ENSE00003584441.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4133 chr2 ENSEMBL exon 29296888 29297057 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 8; exon_id "ENSE00003638382.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4134 chr2 ENSEMBL CDS 29296888 29297057 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 8; exon_id "ENSE00003638382.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4135 chr2 ENSEMBL exon 29275402 29275496 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 9; exon_id "ENSE00001255635.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4136 chr2 ENSEMBL CDS 29275402 29275496 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 9; exon_id "ENSE00001255635.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4137 chr2 ENSEMBL exon 29275099 29275227 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 10; exon_id "ENSE00001255625.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4138 chr2 ENSEMBL CDS 29275099 29275227 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 10; exon_id "ENSE00001255625.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4139 chr2 ENSEMBL exon 29251105 29251267 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 11; exon_id "ENSE00001329399.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4140 chr2 ENSEMBL CDS 29251105 29251267 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 11; exon_id "ENSE00001329399.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4141 chr2 ENSEMBL exon 29239680 29239830 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 12; exon_id "ENSE00001154433.2"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4142 chr2 ENSEMBL CDS 29239680 29239830 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 12; exon_id "ENSE00001154433.2"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4143 chr2 ENSEMBL exon 29233565 29233696 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 13; exon_id "ENSE00001154428.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4144 chr2 ENSEMBL CDS 29233565 29233696 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 13; exon_id "ENSE00001154428.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4145 chr2 ENSEMBL exon 29232304 29232448 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 14; exon_id "ENSE00001154426.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4146 chr2 ENSEMBL CDS 29232304 29232448 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 14; exon_id "ENSE00001154426.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4147 chr2 ENSEMBL exon 29228884 29229066 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 15; exon_id "ENSE00001255591.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4148 chr2 ENSEMBL CDS 29228884 29229066 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 15; exon_id "ENSE00001255591.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4149 chr2 ENSEMBL exon 29227574 29227672 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 16; exon_id "ENSE00001154420.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4150 chr2 ENSEMBL CDS 29227574 29227672 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 16; exon_id "ENSE00001154420.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4151 chr2 ENSEMBL exon 29226922 29227074 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 17; exon_id "ENSE00001154417.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4152 chr2 ENSEMBL CDS 29226922 29227074 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 17; exon_id "ENSE00001154417.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4153 chr2 ENSEMBL exon 29225461 29225565 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 18; exon_id "ENSE00001154411.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4154 chr2 ENSEMBL CDS 29225461 29225565 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 18; exon_id "ENSE00001154411.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4155 chr2 ENSEMBL exon 29223342 29223528 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 19; exon_id "ENSE00001154407.3"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4156 chr2 ENSEMBL CDS 29223342 29223528 . - 2 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 19; exon_id "ENSE00001154407.3"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4157 chr2 ENSEMBL exon 29222517 29222607 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 20; exon_id "ENSE00001154403.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4158 chr2 ENSEMBL CDS 29222517 29222607 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 20; exon_id "ENSE00001154403.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4159 chr2 ENSEMBL exon 29222344 29222408 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 21; exon_id "ENSE00001154399.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4160 chr2 ENSEMBL CDS 29222344 29222408 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 21; exon_id "ENSE00001154399.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4161 chr2 ENSEMBL exon 29220706 29220835 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 22; exon_id "ENSE00001154395.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4162 chr2 ENSEMBL CDS 29220706 29220835 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 22; exon_id "ENSE00001154395.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4163 chr2 ENSEMBL exon 29213984 29214081 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 23; exon_id "ENSE00001154390.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4164 chr2 ENSEMBL CDS 29213984 29214081 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 23; exon_id "ENSE00001154390.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4165 chr2 ENSEMBL exon 29209786 29209878 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 24; exon_id "ENSE00001154381.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4166 chr2 ENSEMBL CDS 29209786 29209878 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 24; exon_id "ENSE00001154381.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4167 chr2 ENSEMBL exon 29207171 29207272 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 25; exon_id "ENSE00001682043.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4168 chr2 ENSEMBL CDS 29207171 29207272 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 25; exon_id "ENSE00001682043.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4169 chr2 ENSEMBL exon 29197542 29197676 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 26; exon_id "ENSE00001154367.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4170 chr2 ENSEMBL CDS 29197542 29197676 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 26; exon_id "ENSE00001154367.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4171 chr2 ENSEMBL exon 29196770 29196860 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 27; exon_id "ENSE00001154361.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4172 chr2 ENSEMBL CDS 29196770 29196860 . - 1 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 27; exon_id "ENSE00001154361.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4173 chr2 ENSEMBL exon 29192777 29193922 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 28; exon_id "ENSE00001691879.2"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4174 chr2 ENSEMBL CDS 29193227 29193922 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 28; exon_id "ENSE00001691879.2"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4175 chr2 ENSEMBL stop_codon 29193224 29193226 . - 0 gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 28; exon_id "ENSE00001691879.2"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4176 chr2 ENSEMBL UTR 29717578 29717700 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 1; exon_id "ENSE00001783577.2"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4177 chr2 ENSEMBL UTR 29694850 29695014 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 2; exon_id "ENSE00003713391.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4178 chr2 ENSEMBL UTR 29531938 29532116 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 3; exon_id "ENSE00003717956.1"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4179 chr2 ENSEMBL UTR 29192777 29193226 . - . gene_id "ENSG00000171094.15"; transcript_id "ENST00000618119.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALK"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALK-202"; exon_number 28; exon_id "ENSE00001691879.2"; level 3; protein_id "ENSP00000482733.1"; tag "basic"; transcript_support_level "5"; tag "appris_alternative_2"; havana_gene "OTTHUMG00000152034.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4180 chr11 HAVANA transcript 43880811 43920010 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4181 chr11 HAVANA exon 43880811 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 1; exon_id "ENSE00002194059.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4182 chr11 HAVANA exon 43882583 43882731 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4183 chr11 HAVANA CDS 43882653 43882731 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4184 chr11 HAVANA start_codon 43882653 43882655 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4185 chr11 HAVANA exon 43883085 43883188 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 3; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4186 chr11 HAVANA CDS 43883085 43883188 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 3; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4187 chr11 HAVANA exon 43883983 43884017 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 4; exon_id "ENSE00003521945.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4188 chr11 HAVANA CDS 43883983 43884017 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 4; exon_id "ENSE00003521945.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4189 chr11 HAVANA exon 43886606 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 5; exon_id "ENSE00003602677.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4190 chr11 HAVANA CDS 43886606 43886653 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 5; exon_id "ENSE00003602677.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4191 chr11 HAVANA exon 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 6; exon_id "ENSE00003667714.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4192 chr11 HAVANA CDS 43889725 43889828 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 6; exon_id "ENSE00003667714.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4193 chr11 HAVANA exon 43897195 43897354 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 7; exon_id "ENSE00002145926.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4194 chr11 HAVANA CDS 43897195 43897337 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 7; exon_id "ENSE00002145926.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4195 chr11 HAVANA stop_codon 43897338 43897340 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 7; exon_id "ENSE00002145926.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4196 chr11 HAVANA exon 43901516 43901725 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 8; exon_id "ENSE00003680574.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4197 chr11 HAVANA exon 43919038 43919136 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 9; exon_id "ENSE00003562233.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4198 chr11 HAVANA exon 43919918 43920010 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 10; exon_id "ENSE00002196973.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4199 chr11 HAVANA UTR 43880811 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 1; exon_id "ENSE00002194059.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4200 chr11 HAVANA UTR 43882583 43882652 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4201 chr11 HAVANA UTR 43897338 43897354 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 7; exon_id "ENSE00002145926.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4202 chr11 HAVANA UTR 43901516 43901725 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 8; exon_id "ENSE00003680574.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4203 chr11 HAVANA UTR 43919038 43919136 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 9; exon_id "ENSE00003562233.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4204 chr11 HAVANA UTR 43919918 43920010 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532962.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-003"; exon_number 10; exon_id "ENSE00002196973.1"; level 2; protein_id "ENSP00000434832.1"; transcript_support_level "1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389692.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4205 chr11 HAVANA transcript 43880831 43882802 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000527029.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-008"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389708.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4206 chr11 HAVANA exon 43880831 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000527029.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-008"; exon_number 1; exon_id "ENSE00002181840.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389708.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4207 chr11 HAVANA exon 43882583 43882802 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000527029.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-008"; exon_number 2; exon_id "ENSE00002178212.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389708.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4208 chr11 HAVANA transcript 43880839 43920212 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4209 chr11 HAVANA exon 43880839 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 1; exon_id "ENSE00002194114.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4210 chr11 HAVANA exon 43882583 43882731 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4211 chr11 HAVANA CDS 43882653 43882731 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4212 chr11 HAVANA start_codon 43882653 43882655 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4213 chr11 HAVANA exon 43883085 43883188 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 3; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4214 chr11 HAVANA CDS 43883085 43883188 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 3; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4215 chr11 HAVANA exon 43883983 43884017 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 4; exon_id "ENSE00003521945.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4216 chr11 HAVANA CDS 43883983 43884017 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 4; exon_id "ENSE00003521945.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4217 chr11 HAVANA exon 43886606 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 5; exon_id "ENSE00003602677.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4218 chr11 HAVANA CDS 43886606 43886653 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 5; exon_id "ENSE00003602677.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4219 chr11 HAVANA exon 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 6; exon_id "ENSE00003667714.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4220 chr11 HAVANA CDS 43889725 43889828 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 6; exon_id "ENSE00003667714.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4221 chr11 HAVANA exon 43892041 43892129 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 7; exon_id "ENSE00003658114.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4222 chr11 HAVANA CDS 43892041 43892129 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 7; exon_id "ENSE00003658114.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4223 chr11 HAVANA exon 43901516 43901725 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 8; exon_id "ENSE00003515101.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4224 chr11 HAVANA CDS 43901516 43901725 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 8; exon_id "ENSE00003515101.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4225 chr11 HAVANA exon 43919038 43919136 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 9; exon_id "ENSE00003477134.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4226 chr11 HAVANA CDS 43919038 43919136 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 9; exon_id "ENSE00003477134.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4227 chr11 HAVANA exon 43919918 43920212 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 10; exon_id "ENSE00002191074.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4228 chr11 HAVANA CDS 43919918 43920007 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 10; exon_id "ENSE00002191074.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4229 chr11 HAVANA stop_codon 43920008 43920010 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 10; exon_id "ENSE00002191074.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4230 chr11 HAVANA UTR 43880839 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 1; exon_id "ENSE00002194114.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4231 chr11 HAVANA UTR 43882583 43882652 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4232 chr11 HAVANA UTR 43920008 43920212 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000302708.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-001"; exon_number 10; exon_id "ENSE00002191074.1"; level 2; protein_id "ENSP00000302232.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS7906.1"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389693.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4233 chr11 HAVANA transcript 43880850 43901544 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4234 chr11 HAVANA exon 43880850 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 1; exon_id "ENSE00002187232.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4235 chr11 HAVANA exon 43882583 43882731 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4236 chr11 HAVANA CDS 43882653 43882731 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4237 chr11 HAVANA start_codon 43882653 43882655 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4238 chr11 HAVANA exon 43883085 43883188 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 3; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4239 chr11 HAVANA CDS 43883085 43883188 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 3; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4240 chr11 HAVANA exon 43886606 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 4; exon_id "ENSE00003461426.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4241 chr11 HAVANA CDS 43886606 43886620 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 4; exon_id "ENSE00003461426.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4242 chr11 HAVANA stop_codon 43886621 43886623 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 4; exon_id "ENSE00003461426.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4243 chr11 HAVANA exon 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 5; exon_id "ENSE00003465446.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4244 chr11 HAVANA exon 43901516 43901544 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 6; exon_id "ENSE00002176006.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4245 chr11 HAVANA UTR 43880850 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 1; exon_id "ENSE00002187232.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4246 chr11 HAVANA UTR 43882583 43882652 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4247 chr11 HAVANA UTR 43886621 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 4; exon_id "ENSE00003461426.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4248 chr11 HAVANA UTR 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 5; exon_id "ENSE00003465446.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4249 chr11 HAVANA UTR 43901516 43901544 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000534171.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-006"; exon_number 6; exon_id "ENSE00002176006.1"; level 2; protein_id "ENSP00000432259.1"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389709.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4250 chr11 HAVANA transcript 43880855 43883185 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4251 chr11 HAVANA exon 43880855 43881446 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; exon_number 1; exon_id "ENSE00002179183.1"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4252 chr11 HAVANA exon 43882583 43882731 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4253 chr11 HAVANA CDS 43882653 43882731 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4254 chr11 HAVANA start_codon 43882653 43882655 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4255 chr11 HAVANA exon 43883085 43883185 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; exon_number 3; exon_id "ENSE00002197412.1"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4256 chr11 HAVANA CDS 43883085 43883185 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; exon_number 3; exon_id "ENSE00002197412.1"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4257 chr11 HAVANA UTR 43880855 43881446 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; exon_number 1; exon_id "ENSE00002179183.1"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4258 chr11 HAVANA UTR 43882583 43882652 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000524742.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-007"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000434229.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389710.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4259 chr11 HAVANA transcript 43880874 43920266 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4260 chr11 HAVANA exon 43880874 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 1; exon_id "ENSE00002146837.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4261 chr11 HAVANA exon 43882583 43882731 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4262 chr11 HAVANA CDS 43882653 43882731 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4263 chr11 HAVANA start_codon 43882653 43882655 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4264 chr11 HAVANA exon 43883085 43883188 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 3; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4265 chr11 HAVANA CDS 43883085 43883188 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 3; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4266 chr11 HAVANA exon 43883983 43884017 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 4; exon_id "ENSE00003521945.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4267 chr11 HAVANA CDS 43883983 43884017 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 4; exon_id "ENSE00003521945.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4268 chr11 HAVANA exon 43886609 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 5; exon_id "ENSE00001478938.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4269 chr11 HAVANA CDS 43886609 43886653 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 5; exon_id "ENSE00001478938.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4270 chr11 HAVANA exon 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 6; exon_id "ENSE00003667714.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4271 chr11 HAVANA CDS 43889725 43889828 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 6; exon_id "ENSE00003667714.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4272 chr11 HAVANA exon 43897195 43897354 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 7; exon_id "ENSE00002145926.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4273 chr11 HAVANA CDS 43897195 43897337 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 7; exon_id "ENSE00002145926.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4274 chr11 HAVANA stop_codon 43897338 43897340 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 7; exon_id "ENSE00002145926.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4275 chr11 HAVANA exon 43901516 43901725 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 8; exon_id "ENSE00003680574.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4276 chr11 HAVANA exon 43919042 43919136 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 9; exon_id "ENSE00002162461.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4277 chr11 HAVANA exon 43919918 43920266 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 10; exon_id "ENSE00003657465.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4278 chr11 HAVANA UTR 43880874 43881179 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 1; exon_id "ENSE00002146837.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4279 chr11 HAVANA UTR 43882583 43882652 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 2; exon_id "ENSE00001248417.3"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4280 chr11 HAVANA UTR 43897338 43897354 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 7; exon_id "ENSE00002145926.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4281 chr11 HAVANA UTR 43901516 43901725 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 8; exon_id "ENSE00003680574.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4282 chr11 HAVANA UTR 43919042 43919136 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 9; exon_id "ENSE00002162461.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4283 chr11 HAVANA UTR 43919918 43920266 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530803.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH3-002"; exon_number 10; exon_id "ENSE00003657465.1"; level 2; protein_id "ENSP00000436788.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389694.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4284 chr11 HAVANA transcript 43882577 43919042 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4285 chr11 HAVANA exon 43882577 43882731 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 1; exon_id "ENSE00002150337.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4286 chr11 HAVANA CDS 43882653 43882731 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 1; exon_id "ENSE00002150337.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4287 chr11 HAVANA start_codon 43882653 43882655 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 1; exon_id "ENSE00002150337.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4288 chr11 HAVANA exon 43883085 43883188 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 2; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4289 chr11 HAVANA CDS 43883085 43883188 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 2; exon_id "ENSE00003601122.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4290 chr11 HAVANA exon 43883983 43884017 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 3; exon_id "ENSE00003521945.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4291 chr11 HAVANA CDS 43883983 43884017 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 3; exon_id "ENSE00003521945.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4292 chr11 HAVANA exon 43886609 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 4; exon_id "ENSE00001478938.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4293 chr11 HAVANA CDS 43886609 43886653 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 4; exon_id "ENSE00001478938.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4294 chr11 HAVANA exon 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 5; exon_id "ENSE00003667714.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4295 chr11 HAVANA CDS 43889725 43889828 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 5; exon_id "ENSE00003667714.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4296 chr11 HAVANA exon 43892041 43892129 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 6; exon_id "ENSE00003658114.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4297 chr11 HAVANA CDS 43892041 43892129 . + 2 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 6; exon_id "ENSE00003658114.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4298 chr11 HAVANA exon 43901516 43901725 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 7; exon_id "ENSE00003515101.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4299 chr11 HAVANA CDS 43901516 43901725 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 7; exon_id "ENSE00003515101.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4300 chr11 HAVANA exon 43919038 43919042 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 8; exon_id "ENSE00002184978.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4301 chr11 HAVANA CDS 43919038 43919042 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 8; exon_id "ENSE00002184978.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4302 chr11 HAVANA UTR 43882577 43882652 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529366.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-010"; exon_number 1; exon_id "ENSE00002150337.1"; level 2; protein_id "ENSP00000435848.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389711.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4303 chr11 HAVANA transcript 43882581 43897700 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000533200.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-009"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389712.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4304 chr11 HAVANA exon 43882581 43882731 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000533200.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-009"; exon_number 1; exon_id "ENSE00002156246.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389712.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4305 chr11 HAVANA exon 43883085 43883188 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000533200.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-009"; exon_number 2; exon_id "ENSE00003680131.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389712.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4306 chr11 HAVANA exon 43883983 43884017 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000533200.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-009"; exon_number 3; exon_id "ENSE00003692284.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389712.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4307 chr11 HAVANA exon 43886606 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000533200.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-009"; exon_number 4; exon_id "ENSE00003660553.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389712.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4308 chr11 HAVANA exon 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000533200.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-009"; exon_number 5; exon_id "ENSE00003465446.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389712.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4309 chr11 HAVANA exon 43897626 43897700 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000533200.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-009"; exon_number 6; exon_id "ENSE00002149042.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389712.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4310 chr11 HAVANA transcript 43883082 43901714 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530754.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-005"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389713.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4311 chr11 HAVANA exon 43883082 43883188 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530754.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-005"; exon_number 1; exon_id "ENSE00002140590.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389713.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4312 chr11 HAVANA exon 43883983 43884017 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530754.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-005"; exon_number 2; exon_id "ENSE00003692284.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389713.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4313 chr11 HAVANA exon 43886606 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530754.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-005"; exon_number 3; exon_id "ENSE00003660553.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389713.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4314 chr11 HAVANA exon 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530754.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-005"; exon_number 4; exon_id "ENSE00003465446.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389713.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4315 chr11 HAVANA exon 43892041 43892129 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530754.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-005"; exon_number 5; exon_id "ENSE00003686052.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389713.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4316 chr11 HAVANA exon 43901516 43901714 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000530754.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-005"; exon_number 6; exon_id "ENSE00002189603.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389713.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4317 chr11 HAVANA transcript 43883083 43920173 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-011"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389714.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4318 chr11 HAVANA exon 43883083 43883188 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-011"; exon_number 1; exon_id "ENSE00002183536.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389714.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4319 chr11 HAVANA exon 43883983 43884017 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-011"; exon_number 2; exon_id "ENSE00003692284.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389714.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4320 chr11 HAVANA exon 43886606 43886653 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-011"; exon_number 3; exon_id "ENSE00003660553.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389714.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4321 chr11 HAVANA exon 43889725 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-011"; exon_number 4; exon_id "ENSE00003465446.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389714.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4322 chr11 HAVANA exon 43919038 43919136 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-011"; exon_number 5; exon_id "ENSE00003562233.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389714.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4323 chr11 HAVANA exon 43919918 43920173 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532410.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ALKBH3-011"; exon_number 6; exon_id "ENSE00002194360.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389714.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4324 chr11 HAVANA transcript 43889762 43920266 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4325 chr11 HAVANA exon 43889762 43889828 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 1; exon_id "ENSE00002201610.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4326 chr11 HAVANA CDS 43889762 43889828 . + 1 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 1; exon_id "ENSE00002201610.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4327 chr11 HAVANA exon 43901516 43901725 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 2; exon_id "ENSE00003515101.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4328 chr11 HAVANA CDS 43901516 43901725 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 2; exon_id "ENSE00003515101.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4329 chr11 HAVANA exon 43919038 43919136 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 3; exon_id "ENSE00003477134.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4330 chr11 HAVANA CDS 43919038 43919136 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 3; exon_id "ENSE00003477134.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4331 chr11 HAVANA exon 43919918 43920266 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 4; exon_id "ENSE00003567634.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4332 chr11 HAVANA CDS 43919918 43920007 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 4; exon_id "ENSE00003567634.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4333 chr11 HAVANA stop_codon 43920008 43920010 . + 0 gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 4; exon_id "ENSE00003567634.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4334 chr11 HAVANA UTR 43920008 43920266 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000532129.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH3-012"; exon_number 4; exon_id "ENSE00003567634.1"; level 2; protein_id "ENSP00000433614.1"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389715.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4335 chr11 HAVANA transcript 43918804 43920266 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529434.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-004"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389716.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4336 chr11 HAVANA exon 43918804 43919136 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529434.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-004"; exon_number 1; exon_id "ENSE00002179315.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389716.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4337 chr11 HAVANA exon 43919918 43920266 . + . gene_id "ENSG00000166199.12"; transcript_id "ENST00000529434.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH3"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH3-004"; exon_number 2; exon_id "ENSE00003657465.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000166417.3"; havana_transcript "OTTHUMT00000389716.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4338 chr7 HAVANA transcript 102456238 102464876 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4339 chr7 HAVANA exon 102464714 102464876 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 1; exon_id "ENSE00001914173.1"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4340 chr7 HAVANA CDS 102464714 102464836 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 1; exon_id "ENSE00001914173.1"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4341 chr7 HAVANA start_codon 102464834 102464836 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 1; exon_id "ENSE00001914173.1"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4342 chr7 HAVANA exon 102459604 102459801 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 2; exon_id "ENSE00001055853.1"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4343 chr7 HAVANA CDS 102459604 102459801 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 2; exon_id "ENSE00001055853.1"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4344 chr7 HAVANA exon 102456238 102457981 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 3; exon_id "ENSE00001177954.4"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4345 chr7 HAVANA CDS 102457397 102457981 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 3; exon_id "ENSE00001177954.4"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4346 chr7 HAVANA stop_codon 102457394 102457396 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 3; exon_id "ENSE00001177954.4"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4347 chr7 HAVANA UTR 102464837 102464876 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 1; exon_id "ENSE00001914173.1"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4348 chr7 HAVANA UTR 102456238 102457396 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000292566.3"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH4-001"; exon_number 3; exon_id "ENSE00001177954.4"; level 2; protein_id "ENSP00000292566.3"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS5723.1"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349503.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4349 chr7 HAVANA transcript 102456834 102464863 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4350 chr7 HAVANA exon 102464714 102464863 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 1; exon_id "ENSE00001919176.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4351 chr7 HAVANA CDS 102464714 102464836 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 1; exon_id "ENSE00001919176.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4352 chr7 HAVANA start_codon 102464834 102464836 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 1; exon_id "ENSE00001919176.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4353 chr7 HAVANA exon 102459604 102459710 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 2; exon_id "ENSE00001938904.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4354 chr7 HAVANA CDS 102459708 102459710 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 2; exon_id "ENSE00001938904.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4355 chr7 HAVANA stop_codon 102459705 102459707 . - 0 gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 2; exon_id "ENSE00001938904.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4356 chr7 HAVANA exon 102456834 102457981 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 3; exon_id "ENSE00001896468.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4357 chr7 HAVANA UTR 102464837 102464863 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 1; exon_id "ENSE00001919176.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4358 chr7 HAVANA UTR 102459604 102459707 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 2; exon_id "ENSE00001938904.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4359 chr7 HAVANA UTR 102456834 102457981 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000490528.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ALKBH4-002"; exon_number 3; exon_id "ENSE00001896468.1"; level 2; protein_id "ENSP00000420362.1"; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349504.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4360 chr7 HAVANA transcript 102459397 102464857 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000498283.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH4-003"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349505.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4361 chr7 HAVANA exon 102464714 102464857 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000498283.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH4-003"; exon_number 1; exon_id "ENSE00001055848.5"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349505.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4362 chr7 HAVANA exon 102459397 102459801 . - . gene_id "ENSG00000160993.3"; transcript_id "ENST00000498283.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH4"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH4-003"; exon_number 2; exon_id "ENSE00001929117.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000157720.1"; havana_transcript "OTTHUMT00000349505.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4363 chr7 HAVANA transcript 13891228 13989946 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4364 chr7 HAVANA exon 13989563 13989946 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 1; exon_id "ENSE00001625577.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4365 chr7 HAVANA exon 13989268 13989464 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 2; exon_id "ENSE00001537799.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4366 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4367 chr7 HAVANA CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4368 chr7 HAVANA start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4369 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 4; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4370 chr7 HAVANA CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 4; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4371 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 5; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4372 chr7 HAVANA CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 5; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4373 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 6; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4374 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 6; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4375 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 7; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4376 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 7; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4377 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 8; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4378 chr7 HAVANA CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 8; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4379 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 9; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4380 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 9; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4381 chr7 HAVANA exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 10; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4382 chr7 HAVANA CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 10; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4383 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 11; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4384 chr7 HAVANA CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 11; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4385 chr7 HAVANA exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 12; exon_id "ENSE00003671672.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4386 chr7 HAVANA CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 12; exon_id "ENSE00003671672.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4387 chr7 HAVANA exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 13; exon_id "ENSE00003465794.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4388 chr7 HAVANA CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 13; exon_id "ENSE00003465794.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4389 chr7 HAVANA exon 13891228 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 14; exon_id "ENSE00001561313.2"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4390 chr7 HAVANA CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 14; exon_id "ENSE00001561313.2"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4391 chr7 HAVANA stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 14; exon_id "ENSE00001561313.2"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4392 chr7 HAVANA UTR 13989563 13989946 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 1; exon_id "ENSE00001625577.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4393 chr7 HAVANA UTR 13989268 13989464 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 2; exon_id "ENSE00001537799.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4394 chr7 HAVANA UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4395 chr7 HAVANA UTR 13891228 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000430479.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-001"; exon_number 14; exon_id "ENSE00001561313.2"; level 2; protein_id "ENSP00000405327.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326111.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4396 chr7 HAVANA transcript 13893030 13989676 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4397 chr7 HAVANA exon 13989563 13989676 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 1; exon_id "ENSE00001552741.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4398 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 2; exon_id "ENSE00003499933.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4399 chr7 HAVANA CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 2; exon_id "ENSE00003499933.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4400 chr7 HAVANA start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 2; exon_id "ENSE00003499933.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4401 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 3; exon_id "ENSE00003694454.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4402 chr7 HAVANA CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 3; exon_id "ENSE00003694454.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4403 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 4; exon_id "ENSE00003606614.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4404 chr7 HAVANA CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 4; exon_id "ENSE00003606614.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4405 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 5; exon_id "ENSE00003515391.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4406 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 5; exon_id "ENSE00003515391.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4407 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 6; exon_id "ENSE00003613528.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4408 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 6; exon_id "ENSE00003613528.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4409 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 7; exon_id "ENSE00003595382.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4410 chr7 HAVANA CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 7; exon_id "ENSE00003595382.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4411 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 8; exon_id "ENSE00003600886.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4412 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 8; exon_id "ENSE00003600886.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4413 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 9; exon_id "ENSE00003687305.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4414 chr7 HAVANA CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 9; exon_id "ENSE00003687305.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4415 chr7 HAVANA exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 10; exon_id "ENSE00003671672.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4416 chr7 HAVANA CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 10; exon_id "ENSE00003671672.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4417 chr7 HAVANA exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 11; exon_id "ENSE00003465794.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4418 chr7 HAVANA CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 11; exon_id "ENSE00003465794.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4419 chr7 HAVANA exon 13893030 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 12; exon_id "ENSE00001552150.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4420 chr7 HAVANA CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 12; exon_id "ENSE00001552150.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4421 chr7 HAVANA stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 12; exon_id "ENSE00001552150.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4422 chr7 HAVANA UTR 13989563 13989676 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 1; exon_id "ENSE00001552741.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4423 chr7 HAVANA UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 2; exon_id "ENSE00003499933.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4424 chr7 HAVANA UTR 13893030 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405192.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-005"; exon_number 12; exon_id "ENSE00001552150.1"; level 1; protein_id "ENSP00000385381.2"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS55087.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326115.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4425 chr7 HAVANA transcript 13893268 13988873 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4426 chr7 HAVANA exon 13988680 13988873 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 1; exon_id "ENSE00001596148.2"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4427 chr7 HAVANA CDS 13988680 13988766 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 1; exon_id "ENSE00001596148.2"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4428 chr7 HAVANA start_codon 13988764 13988766 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 1; exon_id "ENSE00001596148.2"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4429 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 2; exon_id "ENSE00003694454.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4430 chr7 HAVANA CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 2; exon_id "ENSE00003694454.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4431 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 3; exon_id "ENSE00003606614.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4432 chr7 HAVANA CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 3; exon_id "ENSE00003606614.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4433 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 4; exon_id "ENSE00003515391.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4434 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 4; exon_id "ENSE00003515391.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4435 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 5; exon_id "ENSE00003613528.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4436 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 5; exon_id "ENSE00003613528.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4437 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 6; exon_id "ENSE00003595382.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4438 chr7 HAVANA CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 6; exon_id "ENSE00003595382.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4439 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 7; exon_id "ENSE00003600886.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4440 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 7; exon_id "ENSE00003600886.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4441 chr7 HAVANA exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 8; exon_id "ENSE00003662173.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4442 chr7 HAVANA CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 8; exon_id "ENSE00003662173.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4443 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 9; exon_id "ENSE00003687305.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4444 chr7 HAVANA CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 9; exon_id "ENSE00003687305.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4445 chr7 HAVANA exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 10; exon_id "ENSE00003671672.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4446 chr7 HAVANA CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 10; exon_id "ENSE00003671672.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4447 chr7 HAVANA exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 11; exon_id "ENSE00003465794.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4448 chr7 HAVANA CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 11; exon_id "ENSE00003465794.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4449 chr7 HAVANA exon 13893268 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 12; exon_id "ENSE00001857946.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4450 chr7 HAVANA CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 12; exon_id "ENSE00001857946.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4451 chr7 HAVANA stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 12; exon_id "ENSE00001857946.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4452 chr7 HAVANA UTR 13988767 13988873 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 1; exon_id "ENSE00001596148.2"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4453 chr7 HAVANA UTR 13893268 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405358.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-007"; exon_number 12; exon_id "ENSE00001857946.1"; level 1; protein_id "ENSP00000384085.4"; tag "non_canonical_conserved"; tag "not_organism_supported"; tag "basic"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326117.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4454 chr7 HAVANA transcript 13894155 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4455 chr7 HAVANA exon 13986116 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 1; exon_id "ENSE00001556839.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4456 chr7 HAVANA CDS 13986116 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 1; exon_id "ENSE00001556839.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4457 chr7 HAVANA start_codon 13986174 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 1; exon_id "ENSE00001556839.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4458 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 2; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4459 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 2; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4460 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 3; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4461 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 3; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4462 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 4; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4463 chr7 HAVANA CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 4; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4464 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 5; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4465 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 5; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4466 chr7 HAVANA exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 6; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4467 chr7 HAVANA CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 6; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4468 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 7; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4469 chr7 HAVANA CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 7; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4470 chr7 HAVANA exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 8; exon_id "ENSE00003671672.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4471 chr7 HAVANA CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 8; exon_id "ENSE00003671672.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4472 chr7 HAVANA exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 9; exon_id "ENSE00003465794.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4473 chr7 HAVANA CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 9; exon_id "ENSE00003465794.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4474 chr7 HAVANA exon 13894155 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 10; exon_id "ENSE00001554755.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4475 chr7 HAVANA CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 10; exon_id "ENSE00001554755.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4476 chr7 HAVANA stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 10; exon_id "ENSE00001554755.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4477 chr7 HAVANA UTR 13986177 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 1; exon_id "ENSE00001556839.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4478 chr7 HAVANA UTR 13894155 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403527.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-008"; exon_number 10; exon_id "ENSE00001554755.1"; level 2; protein_id "ENSP00000384138.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55085.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326118.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4479 chr7 HAVANA transcript 13894381 13989947 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4480 chr7 HAVANA exon 13989563 13989947 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 1; exon_id "ENSE00001548418.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4481 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4482 chr7 HAVANA CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4483 chr7 HAVANA start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4484 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 3; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4485 chr7 HAVANA CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 3; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4486 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 4; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4487 chr7 HAVANA CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 4; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4488 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 5; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4489 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 5; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4490 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 6; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4491 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 6; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4492 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 7; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4493 chr7 HAVANA CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 7; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4494 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 8; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4495 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 8; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4496 chr7 HAVANA exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 9; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4497 chr7 HAVANA CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 9; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4498 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 10; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4499 chr7 HAVANA CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 10; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4500 chr7 HAVANA exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 11; exon_id "ENSE00003671672.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4501 chr7 HAVANA CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 11; exon_id "ENSE00003671672.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4502 chr7 HAVANA exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 12; exon_id "ENSE00003465794.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4503 chr7 HAVANA CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 12; exon_id "ENSE00003465794.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4504 chr7 HAVANA exon 13894381 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 13; exon_id "ENSE00001551807.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4505 chr7 HAVANA CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 13; exon_id "ENSE00001551807.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4506 chr7 HAVANA stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 13; exon_id "ENSE00001551807.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4507 chr7 HAVANA UTR 13989563 13989947 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 1; exon_id "ENSE00001548418.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4508 chr7 HAVANA UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4509 chr7 HAVANA UTR 13894381 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000405218.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-004"; exon_number 13; exon_id "ENSE00001551807.1"; level 2; protein_id "ENSP00000385551.2"; tag "alternative_5_UTR"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "5"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS55088.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326114.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4510 chr7 HAVANA transcript 13895736 13990690 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4511 chr7 HAVANA exon 13990553 13990690 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 1; exon_id "ENSE00001689081.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4512 chr7 HAVANA exon 13989268 13989464 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 2; exon_id "ENSE00001537799.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4513 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4514 chr7 HAVANA CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4515 chr7 HAVANA start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4516 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 4; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4517 chr7 HAVANA CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 4; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4518 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 5; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4519 chr7 HAVANA CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 5; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4520 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 6; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4521 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 6; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4522 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 7; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4523 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 7; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4524 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 8; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4525 chr7 HAVANA CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 8; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4526 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 9; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4527 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 9; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4528 chr7 HAVANA exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 10; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4529 chr7 HAVANA CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 10; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4530 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 11; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4531 chr7 HAVANA CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 11; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4532 chr7 HAVANA exon 13907793 13907856 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 12; exon_id "ENSE00001739409.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4533 chr7 HAVANA CDS 13907793 13907856 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 12; exon_id "ENSE00001739409.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4534 chr7 HAVANA exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 13; exon_id "ENSE00003519575.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4535 chr7 HAVANA CDS 13906503 13906599 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 13; exon_id "ENSE00003519575.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4536 chr7 HAVANA stop_codon 13906500 13906502 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 13; exon_id "ENSE00003519575.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4537 chr7 HAVANA exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 14; exon_id "ENSE00003477499.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4538 chr7 HAVANA exon 13895736 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 15; exon_id "ENSE00001798184.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4539 chr7 HAVANA UTR 13990553 13990690 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 1; exon_id "ENSE00001689081.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4540 chr7 HAVANA UTR 13989268 13989464 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 2; exon_id "ENSE00001537799.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4541 chr7 HAVANA UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4542 chr7 HAVANA UTR 13906430 13906502 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 13; exon_id "ENSE00003519575.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4543 chr7 HAVANA UTR 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 14; exon_id "ENSE00003477499.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4544 chr7 HAVANA UTR 13895736 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443137.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "ETV1-002"; exon_number 15; exon_id "ENSE00001798184.1"; level 2; protein_id "ENSP00000413836.1"; tag "non_canonical_conserved"; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326112.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4545 chr7 HAVANA transcript 13895858 13991249 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4546 chr7 HAVANA exon 13991122 13991249 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 1; exon_id "ENSE00001562389.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4547 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4548 chr7 HAVANA CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4549 chr7 HAVANA start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4550 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 3; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4551 chr7 HAVANA CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 3; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4552 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 4; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4553 chr7 HAVANA CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 4; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4554 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 5; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4555 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 5; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4556 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 6; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4557 chr7 HAVANA CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 6; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4558 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 7; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4559 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 7; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4560 chr7 HAVANA exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 8; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4561 chr7 HAVANA CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 8; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4562 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 9; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4563 chr7 HAVANA CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 9; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4564 chr7 HAVANA exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 10; exon_id "ENSE00003671672.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4565 chr7 HAVANA CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 10; exon_id "ENSE00003671672.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4566 chr7 HAVANA exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 11; exon_id "ENSE00003465794.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4567 chr7 HAVANA CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 11; exon_id "ENSE00003465794.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4568 chr7 HAVANA exon 13895858 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 12; exon_id "ENSE00001556158.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4569 chr7 HAVANA CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 12; exon_id "ENSE00001556158.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4570 chr7 HAVANA stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 12; exon_id "ENSE00001556158.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4571 chr7 HAVANA UTR 13991122 13991249 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 1; exon_id "ENSE00001562389.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4572 chr7 HAVANA UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4573 chr7 HAVANA UTR 13895858 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000403685.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-003"; exon_number 12; exon_id "ENSE00001556158.1"; level 2; protein_id "ENSP00000385686.1"; tag "non_canonical_conserved"; tag "basic"; transcript_support_level "1"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326113.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4574 chr7 HAVANA transcript 13900373 13906498 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000493831.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-021"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326152.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4575 chr7 HAVANA exon 13906430 13906498 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000493831.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-021"; exon_number 1; exon_id "ENSE00001925953.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326152.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4576 chr7 HAVANA exon 13900373 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000493831.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-021"; exon_number 2; exon_id "ENSE00001923218.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326152.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4577 chr7 HAVANA transcript 13906198 13985489 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4578 chr7 HAVANA exon 13985355 13985489 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; exon_number 1; exon_id "ENSE00002313403.1"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4579 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; exon_number 2; exon_id "ENSE00003619103.1"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4580 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; exon_number 3; exon_id "ENSE00003649725.1"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4581 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; exon_number 4; exon_id "ENSE00003547669.1"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4582 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; exon_number 5; exon_id "ENSE00003509050.1"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4583 chr7 HAVANA exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; exon_number 6; exon_id "ENSE00003611204.1"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4584 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; exon_number 7; exon_id "ENSE00003579268.1"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4585 chr7 HAVANA exon 13906198 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000472931.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-010"; exon_number 8; exon_id "ENSE00001923925.1"; level 2; tag "non_canonical_conserved"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326120.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4586 chr7 HAVANA transcript 13906501 13986452 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4587 chr7 HAVANA exon 13986116 13986452 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 1; exon_id "ENSE00001702225.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4588 chr7 HAVANA CDS 13986116 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 1; exon_id "ENSE00001702225.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4589 chr7 HAVANA start_codon 13986174 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 1; exon_id "ENSE00001702225.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4590 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 2; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4591 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 2; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4592 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 3; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4593 chr7 HAVANA CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 3; exon_id "ENSE00003595382.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4594 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 4; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4595 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 4; exon_id "ENSE00003600886.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4596 chr7 HAVANA exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 5; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4597 chr7 HAVANA CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 5; exon_id "ENSE00003662173.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4598 chr7 HAVANA exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 6; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4599 chr7 HAVANA CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 6; exon_id "ENSE00003687305.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4600 chr7 HAVANA exon 13906501 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 7; exon_id "ENSE00001684684.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4601 chr7 HAVANA CDS 13906501 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 7; exon_id "ENSE00001684684.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4602 chr7 HAVANA UTR 13986177 13986452 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000438956.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-009"; exon_number 1; exon_id "ENSE00001702225.1"; level 2; protein_id "ENSP00000393078.1"; tag "non_canonical_conserved"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326119.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4603 chr7 HAVANA transcript 13911247 13985520 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476720.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-022"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000399438.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4604 chr7 HAVANA exon 13985355 13985520 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476720.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-022"; exon_number 1; exon_id "ENSE00001930446.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000399438.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4605 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476720.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-022"; exon_number 2; exon_id "ENSE00003619103.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000399438.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4606 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476720.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-022"; exon_number 3; exon_id "ENSE00003649725.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000399438.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4607 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476720.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-022"; exon_number 4; exon_id "ENSE00003547669.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000399438.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4608 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476720.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-022"; exon_number 5; exon_id "ENSE00003509050.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000399438.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4609 chr7 HAVANA exon 13911247 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476720.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-022"; exon_number 6; exon_id "ENSE00001802351.2"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000399438.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4610 chr7 HAVANA transcript 13911282 13986441 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4611 chr7 HAVANA exon 13986116 13986441 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 1; exon_id "ENSE00001675498.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4612 chr7 HAVANA CDS 13986116 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 1; exon_id "ENSE00001675498.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4613 chr7 HAVANA start_codon 13986174 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 1; exon_id "ENSE00001675498.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4614 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 2; exon_id "ENSE00003515391.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4615 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 2; exon_id "ENSE00003515391.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4616 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 3; exon_id "ENSE00003613528.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4617 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 3; exon_id "ENSE00003613528.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4618 chr7 HAVANA exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 4; exon_id "ENSE00003600886.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4619 chr7 HAVANA CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 4; exon_id "ENSE00003600886.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4620 chr7 HAVANA exon 13911282 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 5; exon_id "ENSE00001641205.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4621 chr7 HAVANA CDS 13911282 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 5; exon_id "ENSE00001641205.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4622 chr7 HAVANA UTR 13986177 13986441 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000443608.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-020"; exon_number 1; exon_id "ENSE00001675498.1"; level 1; protein_id "ENSP00000394710.1"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; tag "exp_conf"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326130.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4623 chr7 HAVANA transcript 13931642 13987025 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000497115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-017"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326127.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4624 chr7 HAVANA exon 13986971 13987025 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000497115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-017"; exon_number 1; exon_id "ENSE00001893044.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326127.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4625 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000497115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-017"; exon_number 2; exon_id "ENSE00003509455.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326127.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4626 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000497115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-017"; exon_number 3; exon_id "ENSE00003619103.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326127.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4627 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000497115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-017"; exon_number 4; exon_id "ENSE00003649725.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326127.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4628 chr7 HAVANA exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000497115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-017"; exon_number 5; exon_id "ENSE00003547669.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326127.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4629 chr7 HAVANA exon 13931642 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000497115.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-017"; exon_number 6; exon_id "ENSE00001830359.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326127.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4630 chr7 HAVANA transcript 13935711 13988513 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476355.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-016"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326126.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4631 chr7 HAVANA exon 13988086 13988513 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476355.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-016"; exon_number 1; exon_id "ENSE00001937653.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326126.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4632 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476355.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-016"; exon_number 2; exon_id "ENSE00003509455.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326126.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4633 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476355.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-016"; exon_number 3; exon_id "ENSE00003619103.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326126.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4634 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476355.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-016"; exon_number 4; exon_id "ENSE00003649725.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326126.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4635 chr7 HAVANA exon 13935711 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000476355.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-016"; exon_number 5; exon_id "ENSE00001942030.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326126.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4636 chr7 HAVANA transcript 13935893 13991425 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4637 chr7 HAVANA exon 13991328 13991425 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 1; exon_id "ENSE00001789598.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4638 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4639 chr7 HAVANA CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4640 chr7 HAVANA start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4641 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 3; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4642 chr7 HAVANA CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 3; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4643 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 4; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4644 chr7 HAVANA CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 4; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4645 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 5; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4646 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 5; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4647 chr7 HAVANA exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 6; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4648 chr7 HAVANA CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 6; exon_id "ENSE00003613528.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4649 chr7 HAVANA exon 13935893 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 7; exon_id "ENSE00001617304.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4650 chr7 HAVANA CDS 13935893 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 7; exon_id "ENSE00001617304.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4651 chr7 HAVANA UTR 13991328 13991425 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 1; exon_id "ENSE00001789598.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4652 chr7 HAVANA UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000421381.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-011"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000391043.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326121.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4653 chr7 HAVANA transcript 13939196 13991384 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4654 chr7 HAVANA exon 13991328 13991384 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 1; exon_id "ENSE00001647903.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4655 chr7 HAVANA exon 13990553 13990702 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 2; exon_id "ENSE00001654972.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4656 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4657 chr7 HAVANA CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4658 chr7 HAVANA start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4659 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 4; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4660 chr7 HAVANA CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 4; exon_id "ENSE00003694454.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4661 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 5; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4662 chr7 HAVANA CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 5; exon_id "ENSE00003606614.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4663 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 6; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4664 chr7 HAVANA CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 6; exon_id "ENSE00003515391.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4665 chr7 HAVANA exon 13939196 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 7; exon_id "ENSE00001668727.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4666 chr7 HAVANA CDS 13939196 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 7; exon_id "ENSE00001668727.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4667 chr7 HAVANA UTR 13991328 13991384 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 1; exon_id "ENSE00001647903.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4668 chr7 HAVANA UTR 13990553 13990702 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 2; exon_id "ENSE00001654972.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4669 chr7 HAVANA UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000431887.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-012"; exon_number 3; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000410819.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326122.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4670 chr7 HAVANA transcript 13958757 13989103 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000460438.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-019"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326129.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4671 chr7 HAVANA exon 13989008 13989103 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000460438.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-019"; exon_number 1; exon_id "ENSE00001826864.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326129.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4672 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000460438.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-019"; exon_number 2; exon_id "ENSE00003462353.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326129.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4673 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000460438.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-019"; exon_number 3; exon_id "ENSE00003509455.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326129.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4674 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000460438.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-019"; exon_number 4; exon_id "ENSE00003619103.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326129.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4675 chr7 HAVANA exon 13958757 13959040 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000460438.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ETV1-019"; exon_number 5; exon_id "ENSE00001928475.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326129.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4676 chr7 HAVANA transcript 13974864 13989639 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000483075.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-018"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326128.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4677 chr7 HAVANA exon 13989563 13989639 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000483075.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-018"; exon_number 1; exon_id "ENSE00001824366.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326128.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4678 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000483075.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-018"; exon_number 2; exon_id "ENSE00003570665.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326128.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4679 chr7 HAVANA exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000483075.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-018"; exon_number 3; exon_id "ENSE00003462353.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326128.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4680 chr7 HAVANA exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000483075.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-018"; exon_number 4; exon_id "ENSE00003509455.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326128.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4681 chr7 HAVANA exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000483075.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-018"; exon_number 5; exon_id "ENSE00003619103.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326128.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4682 chr7 HAVANA exon 13974864 13975086 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000483075.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-018"; exon_number 6; exon_id "ENSE00001836293.1"; level 2; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326128.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4683 chr7 HAVANA transcript 13988159 13989666 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4684 chr7 HAVANA exon 13989268 13989666 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; exon_number 1; exon_id "ENSE00001728187.1"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4685 chr7 HAVANA exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4686 chr7 HAVANA CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4687 chr7 HAVANA start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4688 chr7 HAVANA exon 13988159 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; exon_number 3; exon_id "ENSE00001749272.1"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4689 chr7 HAVANA CDS 13988159 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; exon_number 3; exon_id "ENSE00001749272.1"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4690 chr7 HAVANA UTR 13989268 13989666 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; exon_number 1; exon_id "ENSE00001728187.1"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4691 chr7 HAVANA UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000433547.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-014"; exon_number 2; exon_id "ENSE00003499933.1"; level 2; protein_id "ENSP00000406931.1"; tag "alternative_5_UTR"; tag "mRNA_end_NF"; tag "cds_end_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326124.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4692 chr7 HAVANA transcript 13989308 13990489 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000485475.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-013"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326123.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4693 chr7 HAVANA exon 13990411 13990489 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000485475.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-013"; exon_number 1; exon_id "ENSE00001829218.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326123.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4694 chr7 HAVANA exon 13989563 13989876 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000485475.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-013"; exon_number 2; exon_id "ENSE00001918447.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326123.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4695 chr7 HAVANA exon 13989308 13989464 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000485475.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "ETV1-013"; exon_number 3; exon_id "ENSE00001953167.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000152403.6"; havana_transcript "OTTHUMT00000326123.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4696 chr7 ENSEMBL transcript 13891233 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4697 chr7 ENSEMBL exon 13986116 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 1; exon_id "ENSE00001556839.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4698 chr7 ENSEMBL CDS 13986116 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 1; exon_id "ENSE00001556839.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4699 chr7 ENSEMBL start_codon 13986174 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 1; exon_id "ENSE00001556839.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4700 chr7 ENSEMBL exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 2; exon_id "ENSE00003613528.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4701 chr7 ENSEMBL CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 2; exon_id "ENSE00003613528.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4702 chr7 ENSEMBL exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 3; exon_id "ENSE00003595382.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4703 chr7 ENSEMBL CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 3; exon_id "ENSE00003595382.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4704 chr7 ENSEMBL exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 4; exon_id "ENSE00003600886.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4705 chr7 ENSEMBL CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 4; exon_id "ENSE00003600886.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4706 chr7 ENSEMBL exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 5; exon_id "ENSE00003662173.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4707 chr7 ENSEMBL CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 5; exon_id "ENSE00003662173.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4708 chr7 ENSEMBL exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 6; exon_id "ENSE00003687305.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4709 chr7 ENSEMBL CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 6; exon_id "ENSE00003687305.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4710 chr7 ENSEMBL exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 7; exon_id "ENSE00003671672.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4711 chr7 ENSEMBL CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 7; exon_id "ENSE00003671672.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4712 chr7 ENSEMBL exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 8; exon_id "ENSE00003465794.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4713 chr7 ENSEMBL CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 8; exon_id "ENSE00003465794.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4714 chr7 ENSEMBL exon 13891233 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 9; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4715 chr7 ENSEMBL CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 9; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4716 chr7 ENSEMBL stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 9; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4717 chr7 ENSEMBL UTR 13986177 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 1; exon_id "ENSE00001556839.1"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4718 chr7 ENSEMBL UTR 13891233 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000420159.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-203"; exon_number 9; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000411626.2"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55083.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4719 chr7 ENSEMBL transcript 13891233 13991425 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4720 chr7 ENSEMBL exon 13991328 13991425 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 1; exon_id "ENSE00001789598.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4721 chr7 ENSEMBL exon 13990553 13990702 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 2; exon_id "ENSE00001654972.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4722 chr7 ENSEMBL exon 13989008 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 3; exon_id "ENSE00003499933.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4723 chr7 ENSEMBL CDS 13989008 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 3; exon_id "ENSE00003499933.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4724 chr7 ENSEMBL start_codon 13989050 13989052 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 3; exon_id "ENSE00003499933.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4725 chr7 ENSEMBL exon 13988086 13988173 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 4; exon_id "ENSE00003694454.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4726 chr7 ENSEMBL CDS 13988086 13988173 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 4; exon_id "ENSE00003694454.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4727 chr7 ENSEMBL exon 13986638 13986685 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 5; exon_id "ENSE00003606614.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4728 chr7 ENSEMBL CDS 13986638 13986685 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 5; exon_id "ENSE00003606614.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4729 chr7 ENSEMBL exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 6; exon_id "ENSE00003613528.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4730 chr7 ENSEMBL CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 6; exon_id "ENSE00003613528.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4731 chr7 ENSEMBL exon 13935708 13935896 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 7; exon_id "ENSE00003595382.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4732 chr7 ENSEMBL CDS 13935708 13935896 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 7; exon_id "ENSE00003595382.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4733 chr7 ENSEMBL exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 8; exon_id "ENSE00003600886.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4734 chr7 ENSEMBL CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 8; exon_id "ENSE00003600886.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4735 chr7 ENSEMBL exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 9; exon_id "ENSE00003662173.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4736 chr7 ENSEMBL CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 9; exon_id "ENSE00003662173.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4737 chr7 ENSEMBL exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 10; exon_id "ENSE00003687305.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4738 chr7 ENSEMBL CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 10; exon_id "ENSE00003687305.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4739 chr7 ENSEMBL exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 11; exon_id "ENSE00003671672.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4740 chr7 ENSEMBL CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 11; exon_id "ENSE00003671672.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4741 chr7 ENSEMBL exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 12; exon_id "ENSE00003465794.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4742 chr7 ENSEMBL CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 12; exon_id "ENSE00003465794.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4743 chr7 ENSEMBL exon 13891233 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 13; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4744 chr7 ENSEMBL CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 13; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4745 chr7 ENSEMBL stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 13; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4746 chr7 ENSEMBL UTR 13991328 13991425 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 1; exon_id "ENSE00001789598.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4747 chr7 ENSEMBL UTR 13990553 13990702 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 2; exon_id "ENSE00001654972.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4748 chr7 ENSEMBL UTR 13989053 13989139 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 3; exon_id "ENSE00003499933.1"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4749 chr7 ENSEMBL UTR 13891233 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000242066.9"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-201"; exon_number 13; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000242066.5"; tag "basic"; transcript_support_level "5"; tag "CCDS"; ccdsid "CCDS55086.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4750 chr7 ENSEMBL transcript 13891233 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4751 chr7 ENSEMBL exon 13986116 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 1; exon_id "ENSE00001556839.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4752 chr7 ENSEMBL CDS 13986116 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 1; exon_id "ENSE00001556839.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4753 chr7 ENSEMBL start_codon 13986174 13986176 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 1; exon_id "ENSE00001556839.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4754 chr7 ENSEMBL exon 13977427 13977480 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 2; exon_id "ENSE00003515391.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4755 chr7 ENSEMBL CDS 13977427 13977480 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 2; exon_id "ENSE00003515391.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4756 chr7 ENSEMBL exon 13939117 13939246 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 3; exon_id "ENSE00003613528.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4757 chr7 ENSEMBL CDS 13939117 13939246 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 3; exon_id "ENSE00003613528.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4758 chr7 ENSEMBL exon 13931502 13931749 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 4; exon_id "ENSE00003600886.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4759 chr7 ENSEMBL CDS 13931502 13931749 . - 1 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 4; exon_id "ENSE00003600886.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4760 chr7 ENSEMBL exon 13911239 13911307 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 5; exon_id "ENSE00003662173.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4761 chr7 ENSEMBL CDS 13911239 13911307 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 5; exon_id "ENSE00003662173.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4762 chr7 ENSEMBL exon 13909632 13909700 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 6; exon_id "ENSE00003687305.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4763 chr7 ENSEMBL CDS 13909632 13909700 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 6; exon_id "ENSE00003687305.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4764 chr7 ENSEMBL exon 13906430 13906599 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 7; exon_id "ENSE00003671672.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4765 chr7 ENSEMBL CDS 13906430 13906599 . - 2 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 7; exon_id "ENSE00003671672.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4766 chr7 ENSEMBL exon 13900738 13900839 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 8; exon_id "ENSE00003465794.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4767 chr7 ENSEMBL CDS 13900738 13900839 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 8; exon_id "ENSE00003465794.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4768 chr7 ENSEMBL exon 13891233 13896087 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 9; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4769 chr7 ENSEMBL CDS 13895869 13896087 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 9; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4770 chr7 ENSEMBL stop_codon 13895866 13895868 . - 0 gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 9; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4771 chr7 ENSEMBL UTR 13986177 13986514 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 1; exon_id "ENSE00001556839.1"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4772 chr7 ENSEMBL UTR 13891233 13895868 . - . gene_id "ENSG00000006468.13"; transcript_id "ENST00000399357.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ETV1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ETV1-202"; exon_number 9; exon_id "ENSE00001085060.5"; level 3; protein_id "ENSP00000382293.3"; tag "basic"; transcript_support_level "2"; tag "CCDS"; ccdsid "CCDS55084.1"; havana_gene "OTTHUMG00000152403.6";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4773 chr15 HAVANA transcript 34343315 34357728 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4774 chr15 HAVANA exon 34343315 34343702 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 1; exon_id "ENSE00002274257.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4775 chr15 HAVANA CDS 34343697 34343702 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 1; exon_id "ENSE00002274257.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4776 chr15 HAVANA start_codon 34343697 34343699 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 1; exon_id "ENSE00002274257.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4777 chr15 HAVANA exon 34345942 34346035 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 2; exon_id "ENSE00002320889.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4778 chr15 HAVANA CDS 34345942 34346035 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 2; exon_id "ENSE00002320889.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4779 chr15 HAVANA exon 34347969 34348677 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 3; exon_id "ENSE00001367212.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4780 chr15 HAVANA CDS 34347969 34348677 . + 2 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 3; exon_id "ENSE00001367212.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4781 chr15 HAVANA exon 34350704 34350832 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 4; exon_id "ENSE00001308844.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4782 chr15 HAVANA CDS 34350704 34350832 . + 1 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 4; exon_id "ENSE00001308844.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4783 chr15 HAVANA exon 34353736 34353872 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 5; exon_id "ENSE00001309543.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4784 chr15 HAVANA CDS 34353736 34353872 . + 1 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 5; exon_id "ENSE00001309543.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4785 chr15 HAVANA exon 34354446 34354732 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 6; exon_id "ENSE00001290335.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4786 chr15 HAVANA CDS 34354446 34354732 . + 2 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 6; exon_id "ENSE00001290335.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4787 chr15 HAVANA exon 34355021 34355137 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 7; exon_id "ENSE00001328067.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4788 chr15 HAVANA CDS 34355021 34355137 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 7; exon_id "ENSE00001328067.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4789 chr15 HAVANA exon 34355488 34357728 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 8; exon_id "ENSE00002239768.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4790 chr15 HAVANA CDS 34355488 34357488 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 8; exon_id "ENSE00002239768.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4791 chr15 HAVANA stop_codon 34357489 34357491 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 8; exon_id "ENSE00002239768.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4792 chr15 HAVANA UTR 34343315 34343696 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 1; exon_id "ENSE00002274257.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4793 chr15 HAVANA UTR 34357489 34357728 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000537011.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-001"; exon_number 8; exon_id "ENSE00002239768.1"; level 1; protein_id "ENSP00000444896.1"; tag "downstream_ATG"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "exp_conf"; tag "CCDS"; ccdsid "CCDS61585.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418024.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4794 chr15 HAVANA transcript 34343410 34357737 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4795 chr15 HAVANA exon 34343410 34343702 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 1; exon_id "ENSE00001602681.3"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4796 chr15 HAVANA CDS 34343633 34343702 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 1; exon_id "ENSE00001602681.3"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4797 chr15 HAVANA start_codon 34343633 34343635 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 1; exon_id "ENSE00001602681.3"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4798 chr15 HAVANA exon 34347969 34348677 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 2; exon_id "ENSE00001367212.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4799 chr15 HAVANA CDS 34347969 34348677 . + 2 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 2; exon_id "ENSE00001367212.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4800 chr15 HAVANA exon 34350704 34350832 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 3; exon_id "ENSE00001308844.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4801 chr15 HAVANA CDS 34350704 34350832 . + 1 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 3; exon_id "ENSE00001308844.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4802 chr15 HAVANA exon 34353736 34353872 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 4; exon_id "ENSE00001309543.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4803 chr15 HAVANA CDS 34353736 34353872 . + 1 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 4; exon_id "ENSE00001309543.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4804 chr15 HAVANA exon 34354446 34354732 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 5; exon_id "ENSE00001290335.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4805 chr15 HAVANA CDS 34354446 34354732 . + 2 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 5; exon_id "ENSE00001290335.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4806 chr15 HAVANA exon 34355021 34355137 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 6; exon_id "ENSE00001328067.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4807 chr15 HAVANA CDS 34355021 34355137 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 6; exon_id "ENSE00001328067.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4808 chr15 HAVANA exon 34355488 34357737 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 7; exon_id "ENSE00002245923.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4809 chr15 HAVANA CDS 34355488 34357488 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 7; exon_id "ENSE00002245923.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4810 chr15 HAVANA stop_codon 34357489 34357491 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 7; exon_id "ENSE00002245923.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4811 chr15 HAVANA UTR 34343410 34343632 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 1; exon_id "ENSE00001602681.3"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4812 chr15 HAVANA UTR 34357489 34357737 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000438749.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-004"; exon_number 7; exon_id "ENSE00002245923.1"; level 2; protein_id "ENSP00000407031.3"; tag "basic"; transcript_support_level "2"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS61584.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418025.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4813 chr15 HAVANA transcript 34345865 34357732 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4814 chr15 HAVANA exon 34345865 34346035 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 1; exon_id "ENSE00001300908.4"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4815 chr15 HAVANA CDS 34346020 34346035 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 1; exon_id "ENSE00001300908.4"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4816 chr15 HAVANA start_codon 34346020 34346022 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 1; exon_id "ENSE00001300908.4"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4817 chr15 HAVANA exon 34347969 34348677 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 2; exon_id "ENSE00001367212.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4818 chr15 HAVANA CDS 34347969 34348677 . + 2 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 2; exon_id "ENSE00001367212.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4819 chr15 HAVANA exon 34350704 34350832 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 3; exon_id "ENSE00001308844.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4820 chr15 HAVANA CDS 34350704 34350832 . + 1 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 3; exon_id "ENSE00001308844.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4821 chr15 HAVANA exon 34353736 34353872 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 4; exon_id "ENSE00001309543.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4822 chr15 HAVANA CDS 34353736 34353872 . + 1 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 4; exon_id "ENSE00001309543.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4823 chr15 HAVANA exon 34354446 34354732 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 5; exon_id "ENSE00001290335.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4824 chr15 HAVANA CDS 34354446 34354732 . + 2 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 5; exon_id "ENSE00001290335.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4825 chr15 HAVANA exon 34355021 34355137 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 6; exon_id "ENSE00001328067.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4826 chr15 HAVANA CDS 34355021 34355137 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 6; exon_id "ENSE00001328067.1"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4827 chr15 HAVANA exon 34355488 34357732 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 7; exon_id "ENSE00001339774.3"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4828 chr15 HAVANA CDS 34355488 34357488 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 7; exon_id "ENSE00001339774.3"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4829 chr15 HAVANA stop_codon 34357489 34357491 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 7; exon_id "ENSE00001339774.3"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4830 chr15 HAVANA UTR 34345865 34346019 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 1; exon_id "ENSE00001300908.4"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4831 chr15 HAVANA UTR 34357489 34357732 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000333756.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-002"; exon_number 7; exon_id "ENSE00001339774.3"; level 2; protein_id "ENSP00000329448.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1"; havana_transcript "OTTHUMT00000418026.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4832 chr15 ENSEMBL transcript 34343315 34357737 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4833 chr15 ENSEMBL exon 34343315 34343702 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 1; exon_id "ENSE00003754291.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4834 chr15 ENSEMBL exon 34345857 34346035 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 2; exon_id "ENSE00003745011.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4835 chr15 ENSEMBL CDS 34346020 34346035 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 2; exon_id "ENSE00003745011.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4836 chr15 ENSEMBL start_codon 34346020 34346022 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 2; exon_id "ENSE00003745011.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4837 chr15 ENSEMBL exon 34347969 34348677 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 3; exon_id "ENSE00001367212.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4838 chr15 ENSEMBL CDS 34347969 34348677 . + 2 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 3; exon_id "ENSE00001367212.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4839 chr15 ENSEMBL exon 34350704 34350832 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 4; exon_id "ENSE00001308844.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4840 chr15 ENSEMBL CDS 34350704 34350832 . + 1 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 4; exon_id "ENSE00001308844.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4841 chr15 ENSEMBL exon 34353736 34353872 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 5; exon_id "ENSE00001309543.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4842 chr15 ENSEMBL CDS 34353736 34353872 . + 1 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 5; exon_id "ENSE00001309543.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4843 chr15 ENSEMBL exon 34354446 34354732 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 6; exon_id "ENSE00001290335.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4844 chr15 ENSEMBL CDS 34354446 34354732 . + 2 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 6; exon_id "ENSE00001290335.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4845 chr15 ENSEMBL exon 34355021 34355137 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 7; exon_id "ENSE00001328067.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4846 chr15 ENSEMBL CDS 34355021 34355137 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 7; exon_id "ENSE00001328067.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4847 chr15 ENSEMBL exon 34355488 34357737 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 8; exon_id "ENSE00002245923.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4848 chr15 ENSEMBL CDS 34355488 34357488 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 8; exon_id "ENSE00002245923.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4849 chr15 ENSEMBL stop_codon 34357489 34357491 . + 0 gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 8; exon_id "ENSE00002245923.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4850 chr15 ENSEMBL UTR 34343315 34343702 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 1; exon_id "ENSE00003754291.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4851 chr15 ENSEMBL UTR 34345857 34346019 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 2; exon_id "ENSE00003745011.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4852 chr15 ENSEMBL UTR 34357489 34357737 . + . gene_id "ENSG00000184507.15"; transcript_id "ENST00000614490.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "NUTM1"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "NUTM1-201"; exon_number 8; exon_id "ENSE00002245923.1"; level 3; protein_id "ENSP00000478903.1"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS32190.1"; havana_gene "OTTHUMG00000172348.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4853 chr17 HAVANA transcript 18183078 18209398 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4854 chr17 HAVANA exon 18183078 18183265 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 1; exon_id "ENSE00002236431.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4855 chr17 HAVANA exon 18194955 18195035 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 2; exon_id "ENSE00003683552.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4856 chr17 HAVANA exon 18206815 18206970 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 3; exon_id "ENSE00003566978.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4857 chr17 HAVANA exon 18208219 18209398 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 4; exon_id "ENSE00002290306.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4858 chr17 HAVANA CDS 18208235 18208393 . + 0 gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 4; exon_id "ENSE00002290306.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4859 chr17 HAVANA start_codon 18208235 18208237 . + 0 gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 4; exon_id "ENSE00002290306.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4860 chr17 HAVANA stop_codon 18208394 18208396 . + 0 gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 4; exon_id "ENSE00002290306.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4861 chr17 HAVANA UTR 18183078 18183265 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 1; exon_id "ENSE00002236431.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4862 chr17 HAVANA UTR 18194955 18195035 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 2; exon_id "ENSE00003683552.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4863 chr17 HAVANA UTR 18206815 18206970 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 3; exon_id "ENSE00003566978.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4864 chr17 HAVANA UTR 18208219 18208234 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 4; exon_id "ENSE00002290306.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4865 chr17 HAVANA UTR 18208394 18209398 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000541285.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-003"; exon_number 4; exon_id "ENSE00002290306.1"; level 1; protein_id "ENSP00000468116.1"; tag "basic"; transcript_support_level "1"; tag "exp_conf"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000400296.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4866 chr17 HAVANA transcript 18184239 18209954 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4867 chr17 HAVANA exon 18184239 18185013 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 1; exon_id "ENSE00001981350.3"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4868 chr17 HAVANA CDS 18184244 18185013 . + 0 gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 1; exon_id "ENSE00001981350.3"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4869 chr17 HAVANA start_codon 18184244 18184246 . + 0 gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 1; exon_id "ENSE00001981350.3"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4870 chr17 HAVANA exon 18194955 18195035 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 2; exon_id "ENSE00003536974.1"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4871 chr17 HAVANA CDS 18194955 18195035 . + 1 gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 2; exon_id "ENSE00003536974.1"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4872 chr17 HAVANA exon 18206815 18206970 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 3; exon_id "ENSE00003518684.1"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4873 chr17 HAVANA CDS 18206815 18206970 . + 1 gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 3; exon_id "ENSE00003518684.1"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4874 chr17 HAVANA exon 18208219 18209954 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 4; exon_id "ENSE00003531842.1"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4875 chr17 HAVANA CDS 18208219 18208393 . + 1 gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 4; exon_id "ENSE00003531842.1"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4876 chr17 HAVANA stop_codon 18208394 18208396 . + 0 gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 4; exon_id "ENSE00003531842.1"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4877 chr17 HAVANA UTR 18184239 18184243 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 1; exon_id "ENSE00001981350.3"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4878 chr17 HAVANA UTR 18208394 18209954 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000399138.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "ALKBH5-001"; exon_number 4; exon_id "ENSE00003531842.1"; level 2; protein_id "ENSP00000382091.4"; tag "basic"; transcript_support_level "2"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS42272.1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132069.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4879 chr17 HAVANA transcript 18206561 18209954 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000490106.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH5-002"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132070.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4880 chr17 HAVANA exon 18206561 18206970 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000490106.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH5-002"; exon_number 1; exon_id "ENSE00001898855.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132070.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4881 chr17 HAVANA exon 18208219 18209954 . + . gene_id "ENSG00000091542.8"; transcript_id "ENST00000490106.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "ALKBH5"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "ALKBH5-002"; exon_number 2; exon_id "ENSE00003519997.1"; level 2; transcript_support_level "1"; havana_gene "OTTHUMG00000059397.5"; havana_transcript "OTTHUMT00000132070.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4882 chr6 HAVANA transcript 92887251 92888581 . - . gene_id "ENSG00000219387.2"; transcript_id "ENST00000406040.2"; gene_type "processed_pseudogene"; gene_status "KNOWN"; gene_name "ATF1P1"; transcript_type "processed_pseudogene"; transcript_status "KNOWN"; transcript_name "ATF1P1-001"; level 1; ont "PGO:0000004"; tag "pseudo_consens"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000015225.2"; havana_transcript "OTTHUMT00000041542.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4883 chr6 HAVANA exon 92887794 92888581 . - . gene_id "ENSG00000219387.2"; transcript_id "ENST00000406040.2"; gene_type "processed_pseudogene"; gene_status "KNOWN"; gene_name "ATF1P1"; transcript_type "processed_pseudogene"; transcript_status "KNOWN"; transcript_name "ATF1P1-001"; exon_number 1; exon_id "ENSE00001562040.1"; level 1; ont "PGO:0000004"; tag "pseudo_consens"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000015225.2"; havana_transcript "OTTHUMT00000041542.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4884 chr6 HAVANA exon 92887251 92887389 . - . gene_id "ENSG00000219387.2"; transcript_id "ENST00000406040.2"; gene_type "processed_pseudogene"; gene_status "KNOWN"; gene_name "ATF1P1"; transcript_type "processed_pseudogene"; transcript_status "KNOWN"; transcript_name "ATF1P1-001"; exon_number 2; exon_id "ENSE00002669271.1"; level 1; ont "PGO:0000004"; tag "pseudo_consens"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000015225.2"; havana_transcript "OTTHUMT00000041542.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4885 chrX HAVANA transcript 75582676 75585506 . + . gene_id "ENSG00000224775.2"; transcript_id "ENST00000445336.2"; gene_type "unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "BRAFP1"; transcript_type "unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "BRAFP1-001"; level 1; ont "PGO:0000005"; tag "pseudo_consens"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000021868.2"; havana_transcript "OTTHUMT00000057286.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4886 chrX HAVANA exon 75582676 75582790 . + . gene_id "ENSG00000224775.2"; transcript_id "ENST00000445336.2"; gene_type "unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "BRAFP1"; transcript_type "unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "BRAFP1-001"; exon_number 1; exon_id "ENSE00001654182.2"; level 1; ont "PGO:0000005"; tag "pseudo_consens"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000021868.2"; havana_transcript "OTTHUMT00000057286.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4887 chrX HAVANA exon 75582919 75585506 . + . gene_id "ENSG00000224775.2"; transcript_id "ENST00000445336.2"; gene_type "unprocessed_pseudogene"; gene_status "KNOWN"; gene_name "BRAFP1"; transcript_type "unprocessed_pseudogene"; transcript_status "KNOWN"; transcript_name "BRAFP1-001"; exon_number 2; exon_id "ENSE00001728762.2"; level 1; ont "PGO:0000005"; tag "pseudo_consens"; tag "basic"; transcript_support_level "NA"; havana_gene "OTTHUMG00000021868.2"; havana_transcript "OTTHUMT00000057286.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4888 chr19 HAVANA transcript 7669044 7670454 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4889 chr19 HAVANA exon 7669044 7669121 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 1; exon_id "ENSE00001380949.2"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4890 chr19 HAVANA exon 7669317 7669444 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 2; exon_id "ENSE00000874612.3"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4891 chr19 HAVANA CDS 7669327 7669444 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 2; exon_id "ENSE00000874612.3"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4892 chr19 HAVANA start_codon 7669327 7669329 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 2; exon_id "ENSE00000874612.3"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4893 chr19 HAVANA exon 7669821 7669898 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 3; exon_id "ENSE00000671462.1"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4894 chr19 HAVANA CDS 7669821 7669898 . + 2 gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 3; exon_id "ENSE00000671462.1"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4895 chr19 HAVANA exon 7670219 7670454 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 4; exon_id "ENSE00000874613.5"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4896 chr19 HAVANA CDS 7670219 7670346 . + 2 gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 4; exon_id "ENSE00000874613.5"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4897 chr19 HAVANA stop_codon 7670347 7670349 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 4; exon_id "ENSE00000874613.5"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4898 chr19 HAVANA UTR 7669044 7669121 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 1; exon_id "ENSE00001380949.2"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4899 chr19 HAVANA UTR 7669317 7669326 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 2; exon_id "ENSE00000874612.3"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4900 chr19 HAVANA UTR 7670347 7670454 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000221515.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-001"; exon_number 4; exon_id "ENSE00000874613.5"; level 2; protein_id "ENSP00000221515.1"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS12182.1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461731.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4901 chr19 HAVANA transcript 7669327 7670349 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000381324.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-002"; level 2; protein_id "ENSP00000370725.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461732.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4902 chr19 HAVANA exon 7669327 7669444 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000381324.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-002"; exon_number 1; exon_id "ENSE00002312895.1"; level 2; protein_id "ENSP00000370725.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461732.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4903 chr19 HAVANA CDS 7669327 7669444 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000381324.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-002"; exon_number 1; exon_id "ENSE00002312895.1"; level 2; protein_id "ENSP00000370725.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461732.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4904 chr19 HAVANA start_codon 7669327 7669329 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000381324.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-002"; exon_number 1; exon_id "ENSE00002312895.1"; level 2; protein_id "ENSP00000370725.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461732.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4905 chr19 HAVANA exon 7670219 7670349 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000381324.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-002"; exon_number 2; exon_id "ENSE00002322882.1"; level 2; protein_id "ENSP00000370725.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461732.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4906 chr19 HAVANA CDS 7670219 7670346 . + 2 gene_id "ENSG00000104918.7"; transcript_id "ENST00000381324.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-002"; exon_number 2; exon_id "ENSE00002322882.1"; level 2; protein_id "ENSP00000370725.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461732.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4907 chr19 HAVANA stop_codon 7670347 7670349 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000381324.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-002"; exon_number 2; exon_id "ENSE00002322882.1"; level 2; protein_id "ENSP00000370725.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461732.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4908 chr19 HAVANA UTR 7670347 7670349 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000381324.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-002"; exon_number 2; exon_id "ENSE00002322882.1"; level 2; protein_id "ENSP00000370725.2"; tag "basic"; transcript_support_level "1"; havana_gene "OTTHUMG00000182503.3"; havana_transcript "OTTHUMT00000461732.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4909 chr19 ENSEMBL transcript 7669086 7670454 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4910 chr19 ENSEMBL exon 7669086 7669121 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 1; exon_id "ENSE00003764258.1"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4911 chr19 ENSEMBL exon 7669317 7669444 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 2; exon_id "ENSE00000874612.3"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4912 chr19 ENSEMBL CDS 7669327 7669444 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 2; exon_id "ENSE00000874612.3"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4913 chr19 ENSEMBL start_codon 7669327 7669329 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 2; exon_id "ENSE00000874612.3"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4914 chr19 ENSEMBL exon 7670219 7670454 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 3; exon_id "ENSE00000874613.5"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4915 chr19 ENSEMBL CDS 7670219 7670346 . + 2 gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 3; exon_id "ENSE00000874613.5"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4916 chr19 ENSEMBL stop_codon 7670347 7670349 . + 0 gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 3; exon_id "ENSE00000874613.5"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4917 chr19 ENSEMBL UTR 7669086 7669121 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 1; exon_id "ENSE00003764258.1"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4918 chr19 ENSEMBL UTR 7669317 7669326 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 2; exon_id "ENSE00000874612.3"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4919 chr19 ENSEMBL UTR 7670347 7670454 . + . gene_id "ENSG00000104918.7"; transcript_id "ENST00000629642.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETN"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETN-201"; exon_number 3; exon_id "ENSE00000874613.5"; level 3; protein_id "ENSP00000485998.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000182503.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4920 chr3 HAVANA transcript 108743424 108757015 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000482939.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETNLB-002"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355094.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4921 chr3 HAVANA exon 108756820 108757015 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000482939.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETNLB-002"; exon_number 1; exon_id "ENSE00001934777.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355094.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4922 chr3 HAVANA exon 108756508 108756588 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000482939.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETNLB-002"; exon_number 2; exon_id "ENSE00003555404.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355094.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4923 chr3 HAVANA exon 108745431 108745511 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000482939.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETNLB-002"; exon_number 3; exon_id "ENSE00001899687.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355094.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4924 chr3 HAVANA exon 108744283 108744367 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000482939.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETNLB-002"; exon_number 4; exon_id "ENSE00001811515.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355094.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4925 chr3 HAVANA exon 108743424 108743491 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000482939.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETNLB-002"; exon_number 5; exon_id "ENSE00001952307.1"; level 2; transcript_support_level "3"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355094.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4926 chr3 HAVANA transcript 108755637 108757384 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4927 chr3 HAVANA exon 108757059 108757384 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 1; exon_id "ENSE00001176498.6"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4928 chr3 HAVANA CDS 108757059 108757185 . - 0 gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 1; exon_id "ENSE00001176498.6"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4929 chr3 HAVANA start_codon 108757183 108757185 . - 0 gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 1; exon_id "ENSE00001176498.6"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4930 chr3 HAVANA exon 108756508 108756588 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 2; exon_id "ENSE00003540174.1"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4931 chr3 HAVANA CDS 108756508 108756588 . - 2 gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 2; exon_id "ENSE00003540174.1"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4932 chr3 HAVANA exon 108755637 108755905 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 3; exon_id "ENSE00001176490.9"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4933 chr3 HAVANA CDS 108755781 108755905 . - 2 gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 3; exon_id "ENSE00001176490.9"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4934 chr3 HAVANA stop_codon 108755778 108755780 . - 0 gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 3; exon_id "ENSE00001176490.9"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4935 chr3 HAVANA UTR 108757186 108757384 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 1; exon_id "ENSE00001176498.6"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4936 chr3 HAVANA UTR 108755637 108755780 . - . gene_id "ENSG00000163515.6"; transcript_id "ENST00000295755.6"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETNLB"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETNLB-001"; exon_number 3; exon_id "ENSE00001176490.9"; level 2; protein_id "ENSP00000295755.6"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS2953.1"; havana_gene "OTTHUMG00000159393.1"; havana_transcript "OTTHUMT00000355093.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4937 chr2 HAVANA transcript 85342088 85350891 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4938 chr2 HAVANA exon 85350780 85350891 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 1; exon_id "ENSE00001692295.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4939 chr2 HAVANA CDS 85350780 85350891 . - 1 gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 1; exon_id "ENSE00001692295.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4940 chr2 HAVANA exon 85350040 85350241 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 2; exon_id "ENSE00001004541.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4941 chr2 HAVANA CDS 85350040 85350241 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 2; exon_id "ENSE00001004541.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4942 chr2 HAVANA exon 85349384 85349581 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 3; exon_id "ENSE00001303755.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4943 chr2 HAVANA CDS 85349384 85349581 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 3; exon_id "ENSE00001303755.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4944 chr2 HAVANA exon 85345975 85346094 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 4; exon_id "ENSE00001004540.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4945 chr2 HAVANA CDS 85345975 85346094 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 4; exon_id "ENSE00001004540.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4946 chr2 HAVANA exon 85344594 85344732 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 5; exon_id "ENSE00003681388.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4947 chr2 HAVANA CDS 85344594 85344732 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 5; exon_id "ENSE00003681388.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4948 chr2 HAVANA exon 85344239 85344348 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 6; exon_id "ENSE00003609958.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4949 chr2 HAVANA CDS 85344239 85344348 . - 1 gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 6; exon_id "ENSE00003609958.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4950 chr2 HAVANA exon 85343639 85343798 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 7; exon_id "ENSE00003493710.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4951 chr2 HAVANA CDS 85343722 85343798 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 7; exon_id "ENSE00003493710.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4952 chr2 HAVANA stop_codon 85343719 85343721 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 7; exon_id "ENSE00003493710.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4953 chr2 HAVANA exon 85342088 85343381 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 8; exon_id "ENSE00003504278.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4954 chr2 HAVANA UTR 85343639 85343721 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 7; exon_id "ENSE00003493710.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4955 chr2 HAVANA UTR 85342088 85343381 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000429806.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-002"; exon_number 8; exon_id "ENSE00003504278.1"; level 2; protein_id "ENSP00000388202.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329086.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4956 chr2 HAVANA transcript 85342088 85354620 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4957 chr2 HAVANA exon 85354336 85354620 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 1; exon_id "ENSE00001829317.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4958 chr2 HAVANA CDS 85354336 85354507 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 1; exon_id "ENSE00001829317.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4959 chr2 HAVANA start_codon 85354505 85354507 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 1; exon_id "ENSE00001829317.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4960 chr2 HAVANA exon 85351680 85351862 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 2; exon_id "ENSE00001275099.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4961 chr2 HAVANA CDS 85351680 85351862 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 2; exon_id "ENSE00001275099.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4962 chr2 HAVANA exon 85350780 85351021 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 3; exon_id "ENSE00001275092.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4963 chr2 HAVANA CDS 85350780 85351021 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 3; exon_id "ENSE00001275092.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4964 chr2 HAVANA exon 85350040 85350241 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 4; exon_id "ENSE00001004541.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4965 chr2 HAVANA CDS 85350040 85350241 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 4; exon_id "ENSE00001004541.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4966 chr2 HAVANA exon 85349384 85349581 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 5; exon_id "ENSE00001303755.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4967 chr2 HAVANA CDS 85349384 85349581 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 5; exon_id "ENSE00001303755.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4968 chr2 HAVANA exon 85345975 85346094 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 6; exon_id "ENSE00001004540.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4969 chr2 HAVANA CDS 85345975 85346094 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 6; exon_id "ENSE00001004540.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4970 chr2 HAVANA exon 85344594 85344732 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 7; exon_id "ENSE00003681388.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4971 chr2 HAVANA CDS 85344594 85344732 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 7; exon_id "ENSE00003681388.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4972 chr2 HAVANA exon 85344239 85344348 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 8; exon_id "ENSE00003609958.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4973 chr2 HAVANA CDS 85344239 85344348 . - 1 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 8; exon_id "ENSE00003609958.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4974 chr2 HAVANA exon 85343999 85344165 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 9; exon_id "ENSE00001004539.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4975 chr2 HAVANA CDS 85343999 85344165 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 9; exon_id "ENSE00001004539.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4976 chr2 HAVANA exon 85343639 85343798 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 10; exon_id "ENSE00003671743.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4977 chr2 HAVANA CDS 85343639 85343798 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 10; exon_id "ENSE00003671743.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4978 chr2 HAVANA exon 85342088 85343381 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 11; exon_id "ENSE00003679509.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4979 chr2 HAVANA CDS 85343245 85343381 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 11; exon_id "ENSE00003679509.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4980 chr2 HAVANA stop_codon 85343242 85343244 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 11; exon_id "ENSE00003679509.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4981 chr2 HAVANA UTR 85354508 85354620 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 1; exon_id "ENSE00001829317.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4982 chr2 HAVANA UTR 85342088 85343244 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000295802.8"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-001"; exon_number 11; exon_id "ENSE00003679509.1"; level 2; protein_id "ENSP00000295802.4"; tag "basic"; transcript_support_level "1"; tag "appris_principal_1"; tag "CCDS"; ccdsid "CCDS1972.1"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000252489.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4983 chr2 HAVANA transcript 85342682 85354500 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4984 chr2 HAVANA exon 85354336 85354500 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 1; exon_id "ENSE00001796885.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4985 chr2 HAVANA CDS 85354336 85354500 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 1; exon_id "ENSE00001796885.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4986 chr2 HAVANA exon 85349384 85349581 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 2; exon_id "ENSE00001303755.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4987 chr2 HAVANA CDS 85349384 85349581 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 2; exon_id "ENSE00001303755.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4988 chr2 HAVANA exon 85345975 85346094 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 3; exon_id "ENSE00001004540.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4989 chr2 HAVANA CDS 85345975 85346094 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 3; exon_id "ENSE00001004540.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4990 chr2 HAVANA exon 85344594 85344732 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 4; exon_id "ENSE00003681388.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4991 chr2 HAVANA CDS 85344594 85344732 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 4; exon_id "ENSE00003681388.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4992 chr2 HAVANA exon 85344239 85344348 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 5; exon_id "ENSE00003609958.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4993 chr2 HAVANA CDS 85344239 85344348 . - 1 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 5; exon_id "ENSE00003609958.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4994 chr2 HAVANA exon 85343999 85344165 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 6; exon_id "ENSE00001004539.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4995 chr2 HAVANA CDS 85343999 85344165 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 6; exon_id "ENSE00001004539.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4996 chr2 HAVANA exon 85343639 85343798 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 7; exon_id "ENSE00003671743.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4997 chr2 HAVANA CDS 85343639 85343798 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 7; exon_id "ENSE00003671743.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4998 chr2 HAVANA exon 85342682 85343381 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 8; exon_id "ENSE00001752653.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
4999 chr2 HAVANA CDS 85343245 85343381 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 8; exon_id "ENSE00001752653.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5000 chr2 HAVANA stop_codon 85343242 85343244 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 8; exon_id "ENSE00001752653.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5001 chr2 HAVANA UTR 85342682 85343244 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000449375.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-004"; exon_number 8; exon_id "ENSE00001752653.1"; level 1; protein_id "ENSP00000412166.1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; tag "exp_conf"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329088.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5002 chr2 HAVANA transcript 85342971 85349481 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5003 chr2 HAVANA exon 85349384 85349481 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 1; exon_id "ENSE00002235277.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5004 chr2 HAVANA CDS 85349384 85349481 . - 1 gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 1; exon_id "ENSE00002235277.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5005 chr2 HAVANA exon 85345513 85346094 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 2; exon_id "ENSE00001828758.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5006 chr2 HAVANA CDS 85345775 85346094 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 2; exon_id "ENSE00001828758.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5007 chr2 HAVANA stop_codon 85345772 85345774 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 2; exon_id "ENSE00001828758.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5008 chr2 HAVANA exon 85344594 85344732 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 3; exon_id "ENSE00003543212.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5009 chr2 HAVANA exon 85344239 85344348 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 4; exon_id "ENSE00003514298.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5010 chr2 HAVANA exon 85343639 85343798 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 5; exon_id "ENSE00003574274.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5011 chr2 HAVANA exon 85342971 85343381 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 6; exon_id "ENSE00001630339.3"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5012 chr2 HAVANA UTR 85345513 85345774 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 2; exon_id "ENSE00001828758.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5013 chr2 HAVANA UTR 85344594 85344732 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 3; exon_id "ENSE00003543212.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5014 chr2 HAVANA UTR 85344239 85344348 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 4; exon_id "ENSE00003514298.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5015 chr2 HAVANA UTR 85343639 85343798 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 5; exon_id "ENSE00003574274.1"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5016 chr2 HAVANA UTR 85342971 85343381 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000438611.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "nonsense_mediated_decay"; transcript_status "KNOWN"; transcript_name "RETSAT-003"; exon_number 6; exon_id "ENSE00001630339.3"; level 2; protein_id "ENSP00000444814.1"; tag "not_organism_supported"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "5"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329087.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5017 chr2 HAVANA transcript 85349432 85354506 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5018 chr2 HAVANA exon 85354336 85354506 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; exon_number 1; exon_id "ENSE00001773083.1"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5019 chr2 HAVANA CDS 85354336 85354506 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; exon_number 1; exon_id "ENSE00001773083.1"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5020 chr2 HAVANA exon 85350780 85351021 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; exon_number 2; exon_id "ENSE00001275092.1"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5021 chr2 HAVANA CDS 85350780 85351021 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; exon_number 2; exon_id "ENSE00001275092.1"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5022 chr2 HAVANA exon 85350040 85350241 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; exon_number 3; exon_id "ENSE00001004541.1"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5023 chr2 HAVANA CDS 85350040 85350241 . - 0 gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; exon_number 3; exon_id "ENSE00001004541.1"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5024 chr2 HAVANA exon 85349432 85349581 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; exon_number 4; exon_id "ENSE00001693543.1"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5025 chr2 HAVANA CDS 85349432 85349581 . - 2 gene_id "ENSG00000042445.13"; transcript_id "ENST00000409984.2"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RETSAT-007"; exon_number 4; exon_id "ENSE00001693543.1"; level 2; protein_id "ENSP00000387196.2"; tag "cds_end_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; tag "cds_start_NF"; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329091.3";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5026 chr2 HAVANA transcript 85349878 85351016 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000482694.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETSAT-006"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329090.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5027 chr2 HAVANA exon 85350780 85351016 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000482694.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETSAT-006"; exon_number 1; exon_id "ENSE00001894217.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329090.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5028 chr2 HAVANA exon 85349878 85350241 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000482694.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "processed_transcript"; transcript_status "KNOWN"; transcript_name "RETSAT-006"; exon_number 2; exon_id "ENSE00001937229.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329090.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5029 chr2 HAVANA transcript 85351399 85354531 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000490291.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RETSAT-005"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329089.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5030 chr2 HAVANA exon 85354336 85354531 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000490291.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RETSAT-005"; exon_number 1; exon_id "ENSE00001907667.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329089.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5031 chr2 HAVANA exon 85351399 85351862 . - . gene_id "ENSG00000042445.13"; transcript_id "ENST00000490291.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RETSAT"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RETSAT-005"; exon_number 2; exon_id "ENSE00001842314.1"; level 2; transcript_support_level "2"; havana_gene "OTTHUMG00000154611.5"; havana_transcript "OTTHUMT00000329089.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5032 chr10 HAVANA transcript 43077027 43130351 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5033 chr10 HAVANA exon 43077027 43077331 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 1; exon_id "ENSE00001948565.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5034 chr10 HAVANA CDS 43077259 43077331 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 1; exon_id "ENSE00001948565.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5035 chr10 HAVANA start_codon 43077259 43077261 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 1; exon_id "ENSE00001948565.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5036 chr10 HAVANA exon 43100459 43100722 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 2; exon_id "ENSE00001365997.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5037 chr10 HAVANA CDS 43100459 43100722 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 2; exon_id "ENSE00001365997.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5038 chr10 HAVANA exon 43102342 43102629 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 3; exon_id "ENSE00001095923.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5039 chr10 HAVANA CDS 43102342 43102629 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 3; exon_id "ENSE00001095923.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5040 chr10 HAVANA exon 43104952 43105193 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 4; exon_id "ENSE00001095946.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5041 chr10 HAVANA CDS 43104952 43105193 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 4; exon_id "ENSE00001095946.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5042 chr10 HAVANA exon 43106376 43106571 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 5; exon_id "ENSE00001095907.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5043 chr10 HAVANA CDS 43106376 43106571 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 5; exon_id "ENSE00001095907.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5044 chr10 HAVANA exon 43109031 43109230 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 6; exon_id "ENSE00001095904.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5045 chr10 HAVANA CDS 43109031 43109230 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 6; exon_id "ENSE00001095904.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5046 chr10 HAVANA exon 43111207 43111465 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 7; exon_id "ENSE00001312192.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5047 chr10 HAVANA CDS 43111207 43111465 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 7; exon_id "ENSE00001312192.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5048 chr10 HAVANA exon 43112099 43112224 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 8; exon_id "ENSE00001164816.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5049 chr10 HAVANA CDS 43112099 43112224 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 8; exon_id "ENSE00001164816.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5050 chr10 HAVANA exon 43112853 43112963 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 9; exon_id "ENSE00001164807.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5051 chr10 HAVANA CDS 43112853 43112963 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 9; exon_id "ENSE00001164807.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5052 chr10 HAVANA exon 43113556 43113675 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 10; exon_id "ENSE00001164798.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5053 chr10 HAVANA CDS 43113556 43113675 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 10; exon_id "ENSE00001164798.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5054 chr10 HAVANA exon 43114480 43114736 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 11; exon_id "ENSE00001164787.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5055 chr10 HAVANA CDS 43114480 43114736 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 11; exon_id "ENSE00001164787.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5056 chr10 HAVANA exon 43116584 43116731 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 12; exon_id "ENSE00001095944.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5057 chr10 HAVANA CDS 43116584 43116731 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 12; exon_id "ENSE00001095944.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5058 chr10 HAVANA exon 43118373 43118480 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 13; exon_id "ENSE00001164770.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5059 chr10 HAVANA CDS 43118373 43118480 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 13; exon_id "ENSE00001164770.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5060 chr10 HAVANA exon 43119531 43119745 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 14; exon_id "ENSE00001164762.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5061 chr10 HAVANA CDS 43119531 43119745 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 14; exon_id "ENSE00001164762.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5062 chr10 HAVANA exon 43120081 43120203 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 15; exon_id "ENSE00002434226.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5063 chr10 HAVANA CDS 43120081 43120203 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 15; exon_id "ENSE00002434226.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5064 chr10 HAVANA exon 43121946 43122016 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 16; exon_id "ENSE00002515890.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5065 chr10 HAVANA CDS 43121946 43122016 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 16; exon_id "ENSE00002515890.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5066 chr10 HAVANA exon 43123671 43123808 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 17; exon_id "ENSE00002442774.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5067 chr10 HAVANA CDS 43123671 43123808 . + 1 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 17; exon_id "ENSE00002442774.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5068 chr10 HAVANA exon 43124883 43124982 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 18; exon_id "ENSE00002444663.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5069 chr10 HAVANA CDS 43124883 43124982 . + 1 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 18; exon_id "ENSE00002444663.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5070 chr10 HAVANA exon 43126575 43126722 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 19; exon_id "ENSE00001095931.2"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5071 chr10 HAVANA CDS 43126575 43126722 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 19; exon_id "ENSE00001095931.2"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5072 chr10 HAVANA exon 43128112 43130351 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 20; exon_id "ENSE00001386034.3"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5073 chr10 HAVANA CDS 43128112 43128266 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 20; exon_id "ENSE00001386034.3"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5074 chr10 HAVANA stop_codon 43128267 43128269 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 20; exon_id "ENSE00001386034.3"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5075 chr10 HAVANA UTR 43077027 43077258 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 1; exon_id "ENSE00001948565.1"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5076 chr10 HAVANA UTR 43128267 43130351 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000355710.7"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-001"; exon_number 20; exon_id "ENSE00001386034.3"; level 2; protein_id "ENSP00000347942.3"; tag "basic"; transcript_support_level "5"; tag "appris_principal_3"; tag "CCDS"; ccdsid "CCDS7200.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000047694.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5077 chr10 HAVANA transcript 43077074 43114593 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5078 chr10 HAVANA exon 43077074 43077331 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 1; exon_id "ENSE00001408547.2"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5079 chr10 HAVANA CDS 43077259 43077331 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 1; exon_id "ENSE00001408547.2"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5080 chr10 HAVANA start_codon 43077259 43077261 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 1; exon_id "ENSE00001408547.2"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5081 chr10 HAVANA exon 43112099 43112224 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 2; exon_id "ENSE00001164816.1"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5082 chr10 HAVANA CDS 43112099 43112224 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 2; exon_id "ENSE00001164816.1"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5083 chr10 HAVANA exon 43112853 43112963 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 3; exon_id "ENSE00001164807.1"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5084 chr10 HAVANA CDS 43112853 43112963 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 3; exon_id "ENSE00001164807.1"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5085 chr10 HAVANA exon 43113556 43113675 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 4; exon_id "ENSE00001164798.1"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5086 chr10 HAVANA CDS 43113556 43113675 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 4; exon_id "ENSE00001164798.1"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5087 chr10 HAVANA exon 43114480 43114593 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 5; exon_id "ENSE00001864125.1"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5088 chr10 HAVANA CDS 43114480 43114593 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 5; exon_id "ENSE00001864125.1"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5089 chr10 HAVANA UTR 43077074 43077258 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000498820.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-003"; exon_number 1; exon_id "ENSE00001408547.2"; level 2; protein_id "ENSP00000419080.1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358139.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5090 chr10 HAVANA transcript 43077079 43127504 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5091 chr10 HAVANA exon 43077079 43077331 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 1; exon_id "ENSE00001155861.6"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5092 chr10 HAVANA CDS 43077259 43077331 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 1; exon_id "ENSE00001155861.6"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5093 chr10 HAVANA start_codon 43077259 43077261 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 1; exon_id "ENSE00001155861.6"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5094 chr10 HAVANA exon 43100459 43100722 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 2; exon_id "ENSE00001365997.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5095 chr10 HAVANA CDS 43100459 43100722 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 2; exon_id "ENSE00001365997.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5096 chr10 HAVANA exon 43102342 43102629 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 3; exon_id "ENSE00001095923.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5097 chr10 HAVANA CDS 43102342 43102629 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 3; exon_id "ENSE00001095923.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5098 chr10 HAVANA exon 43104952 43105193 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 4; exon_id "ENSE00001095946.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5099 chr10 HAVANA CDS 43104952 43105193 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 4; exon_id "ENSE00001095946.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5100 chr10 HAVANA exon 43106376 43106571 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 5; exon_id "ENSE00001095907.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5101 chr10 HAVANA CDS 43106376 43106571 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 5; exon_id "ENSE00001095907.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5102 chr10 HAVANA exon 43109031 43109230 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 6; exon_id "ENSE00001095904.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5103 chr10 HAVANA CDS 43109031 43109230 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 6; exon_id "ENSE00001095904.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5104 chr10 HAVANA exon 43111207 43111465 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 7; exon_id "ENSE00001312192.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5105 chr10 HAVANA CDS 43111207 43111465 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 7; exon_id "ENSE00001312192.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5106 chr10 HAVANA exon 43112099 43112224 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 8; exon_id "ENSE00001164816.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5107 chr10 HAVANA CDS 43112099 43112224 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 8; exon_id "ENSE00001164816.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5108 chr10 HAVANA exon 43112853 43112963 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 9; exon_id "ENSE00001164807.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5109 chr10 HAVANA CDS 43112853 43112963 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 9; exon_id "ENSE00001164807.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5110 chr10 HAVANA exon 43113556 43113675 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 10; exon_id "ENSE00001164798.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5111 chr10 HAVANA CDS 43113556 43113675 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 10; exon_id "ENSE00001164798.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5112 chr10 HAVANA exon 43114480 43114736 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 11; exon_id "ENSE00001164787.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5113 chr10 HAVANA CDS 43114480 43114736 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 11; exon_id "ENSE00001164787.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5114 chr10 HAVANA exon 43116584 43116731 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 12; exon_id "ENSE00001095944.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5115 chr10 HAVANA CDS 43116584 43116731 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 12; exon_id "ENSE00001095944.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5116 chr10 HAVANA exon 43118373 43118480 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 13; exon_id "ENSE00001164770.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5117 chr10 HAVANA CDS 43118373 43118480 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 13; exon_id "ENSE00001164770.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5118 chr10 HAVANA exon 43119531 43119745 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 14; exon_id "ENSE00001164762.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5119 chr10 HAVANA CDS 43119531 43119745 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 14; exon_id "ENSE00001164762.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5120 chr10 HAVANA exon 43120081 43120203 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 15; exon_id "ENSE00002434226.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5121 chr10 HAVANA CDS 43120081 43120203 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 15; exon_id "ENSE00002434226.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5122 chr10 HAVANA exon 43121946 43122016 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 16; exon_id "ENSE00002515890.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5123 chr10 HAVANA CDS 43121946 43122016 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 16; exon_id "ENSE00002515890.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5124 chr10 HAVANA exon 43123671 43123808 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 17; exon_id "ENSE00002442774.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5125 chr10 HAVANA CDS 43123671 43123808 . + 1 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 17; exon_id "ENSE00002442774.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5126 chr10 HAVANA exon 43124883 43124982 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 18; exon_id "ENSE00002444663.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5127 chr10 HAVANA CDS 43124883 43124982 . + 1 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 18; exon_id "ENSE00002444663.1"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5128 chr10 HAVANA exon 43126575 43127504 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 19; exon_id "ENSE00001463655.3"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5129 chr10 HAVANA CDS 43126575 43126751 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 19; exon_id "ENSE00001463655.3"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5130 chr10 HAVANA stop_codon 43126752 43126754 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 19; exon_id "ENSE00001463655.3"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5131 chr10 HAVANA UTR 43077079 43077258 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 1; exon_id "ENSE00001155861.6"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5132 chr10 HAVANA UTR 43126752 43127504 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000340058.5"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-002"; exon_number 19; exon_id "ENSE00001463655.3"; level 2; protein_id "ENSP00000344798.4"; tag "basic"; transcript_support_level "1"; tag "appris_alternative_2"; tag "CCDS"; ccdsid "CCDS53525.1"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358138.2";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5133 chr10 HAVANA transcript 43104732 43106490 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000479913.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RET-004"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358140.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5134 chr10 HAVANA exon 43104732 43105193 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000479913.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RET-004"; exon_number 1; exon_id "ENSE00001871105.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358140.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5135 chr10 HAVANA exon 43106376 43106490 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000479913.1"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "retained_intron"; transcript_status "KNOWN"; transcript_name "RET-004"; exon_number 2; exon_id "ENSE00001898927.1"; level 2; transcript_support_level "4"; havana_gene "OTTHUMG00000018024.4"; havana_transcript "OTTHUMT00000358140.1";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5136 chr10 ENSEMBL transcript 43077069 43130345 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5137 chr10 ENSEMBL exon 43077069 43077331 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 1; exon_id "ENSE00003744437.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5138 chr10 ENSEMBL CDS 43077259 43077331 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 1; exon_id "ENSE00003744437.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5139 chr10 ENSEMBL start_codon 43077259 43077261 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 1; exon_id "ENSE00003744437.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5140 chr10 ENSEMBL exon 43100459 43100722 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 2; exon_id "ENSE00001365997.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5141 chr10 ENSEMBL CDS 43100459 43100722 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 2; exon_id "ENSE00001365997.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5142 chr10 ENSEMBL exon 43102342 43102629 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 3; exon_id "ENSE00001095923.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5143 chr10 ENSEMBL CDS 43102342 43102629 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 3; exon_id "ENSE00001095923.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5144 chr10 ENSEMBL exon 43104952 43105193 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 4; exon_id "ENSE00001095946.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5145 chr10 ENSEMBL CDS 43104952 43105193 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 4; exon_id "ENSE00001095946.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5146 chr10 ENSEMBL exon 43106376 43106571 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 5; exon_id "ENSE00001095907.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5147 chr10 ENSEMBL CDS 43106376 43106571 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 5; exon_id "ENSE00001095907.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5148 chr10 ENSEMBL exon 43109031 43109230 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 6; exon_id "ENSE00001095904.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5149 chr10 ENSEMBL CDS 43109031 43109230 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 6; exon_id "ENSE00001095904.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5150 chr10 ENSEMBL exon 43111207 43111232 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 7; exon_id "ENSE00003743940.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5151 chr10 ENSEMBL CDS 43111207 43111232 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 7; exon_id "ENSE00003743940.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5152 chr10 ENSEMBL exon 43119702 43119745 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 8; exon_id "ENSE00003747086.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5153 chr10 ENSEMBL CDS 43119702 43119745 . + 1 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 8; exon_id "ENSE00003747086.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5154 chr10 ENSEMBL exon 43120081 43120203 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 9; exon_id "ENSE00003728993.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5155 chr10 ENSEMBL CDS 43120081 43120121 . + 2 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 9; exon_id "ENSE00003728993.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5156 chr10 ENSEMBL stop_codon 43120122 43120124 . + 0 gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 9; exon_id "ENSE00003728993.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5157 chr10 ENSEMBL exon 43121946 43122016 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 10; exon_id "ENSE00003731290.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5158 chr10 ENSEMBL exon 43123671 43123808 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 11; exon_id "ENSE00003715210.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5159 chr10 ENSEMBL exon 43124883 43124982 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 12; exon_id "ENSE00003723637.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5160 chr10 ENSEMBL exon 43126575 43126722 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 13; exon_id "ENSE00003745215.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5161 chr10 ENSEMBL exon 43128112 43130345 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 14; exon_id "ENSE00003729654.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5162 chr10 ENSEMBL UTR 43077069 43077258 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 1; exon_id "ENSE00003744437.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5163 chr10 ENSEMBL UTR 43120122 43120203 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 9; exon_id "ENSE00003728993.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5164 chr10 ENSEMBL UTR 43121946 43122016 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 10; exon_id "ENSE00003731290.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5165 chr10 ENSEMBL UTR 43123671 43123808 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 11; exon_id "ENSE00003715210.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5166 chr10 ENSEMBL UTR 43124883 43124982 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 12; exon_id "ENSE00003723637.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5167 chr10 ENSEMBL UTR 43126575 43126722 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 13; exon_id "ENSE00003745215.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";
0e1c639fc077 planemo upload for repository https://github.com/jj-umn/galaxytools/tree/master/check_strandedness commit e4c16166c27dff3e638817f7d6fc5fde0434edb7-dirty
jjohnson
parents:
diff changeset
5168 chr10 ENSEMBL UTR 43128112 43130345 . + . gene_id "ENSG00000165731.17"; transcript_id "ENST00000615310.4"; gene_type "protein_coding"; gene_status "KNOWN"; gene_name "RET"; transcript_type "protein_coding"; transcript_status "KNOWN"; transcript_name "RET-201"; exon_number 14; exon_id "ENSE00003729654.1"; level 3; protein_id "ENSP00000480088.1"; tag "basic"; transcript_support_level "5"; havana_gene "OTTHUMG00000018024.4";