Mercurial > repos > jjohnson > encyclopedia_encyclopedia

changeset 7:b3c5daaea8f4 draft

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"planemo upload for repository https://github.com/galaxyproteomics/tools-galaxyp/tree/encyclopedia/tools/encyclopedia commit dd611a143e4e003a5fb085cdf93ae477cc5ea0b1"
author jjohnson
date Wed, 26 Aug 2020 14:34:45 -0400
parents 61692bb2c78f
children ab194cb763cf
files encyclopedia_encyclopedia.xml
diffstat 1 files changed, 2 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/encyclopedia_encyclopedia.xml	Fri Aug 21 16:07:21 2020 -0400
+++ b/encyclopedia_encyclopedia.xml	Wed Aug 26 14:34:45 2020 -0400
@@ -9,7 +9,7 @@
         @LINK_SCAN_INPUT@
         @LINK_FASTA_INPUT@
         @LINK_LIB_INPUT@
-        EncyclopeDIA -Djava.awt.headless=true
+        EncyclopeDIA -Djava.awt.headless=true -Xmx\$[ \${GALAXY_MEMORY_MB:-20480} / 1024 ]g
         @SCAN_INPUT@
         @FASTA_INPUT@
         @LIB_INPUT@
@@ -95,7 +95,7 @@
             <param name="scan_input" ftype="mzml" value="BCS_hela_wide_500_900_1.mzML"/>
             <param name="library" ftype="elib" value="BCS_hela.elib"/>
             <param name="fasta" ftype="fasta" value="uniprot_human.fasta"/>
-            <param name="select_outputs" values="log,features,encyclopedia"/>
+            <param name="select_outputs" value="log,features,encyclopedia"/>
             <output name="features" ftype="tabular">
                 <assert_contents>
                     <has_text text="ESYDDVSSFR"/>