Mercurial > repos > jjohnson > gmap
changeset 10:93911bac43da
Modifications for ToolShed proprietary data types
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Thu, 05 Jan 2012 14:31:24 -0600 |
| parents | 7f032685214b |
| children | 6adc485b6dc0 |
| files | lib/galaxy/datatypes/gmap.py tool-data/datatypes_conf.xml |
| diffstat | 2 files changed, 27 insertions(+), 3 deletions(-) [+] |
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--- a/lib/galaxy/datatypes/gmap.py Thu Dec 08 11:16:03 2011 -0600 +++ b/lib/galaxy/datatypes/gmap.py Thu Jan 05 14:31:24 2012 -0600 @@ -3,10 +3,10 @@ """ import logging import os,os.path,re -import data -from data import Text +import galaxy.datatypes.data +from galaxy.datatypes.data import Text from galaxy import util -from metadata import MetadataElement +from galaxy.datatypes.metadata import MetadataElement log = logging.getLogger(__name__)
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/datatypes_conf.xml Thu Jan 05 14:31:24 2012 -0600 @@ -0,0 +1,24 @@ +<?xml version="1.0"?> +<datatypes> + <datatype_files> + <datatype_file name="gmap.py"/> + </datatype_files> + <registration> + <datatype extension="gmapdb" type="galaxy.datatypes.gmap:GmapDB" display_in_upload="False"/> + <datatype extension="gmapsnpindex" type="galaxy.datatypes.gmap:GmapSnpIndex" display_in_upload="False"/> + <datatype extension="iit" type="galaxy.datatypes.gmap:IntervalIndexTree" display_in_upload="True"/> + <datatype extension="splicesites.iit" type="galaxy.datatypes.gmap:SpliceSitesIntervalIndexTree" display_in_upload="True"/> + <datatype extension="introns.iit" type="galaxy.datatypes.gmap:IntronsIntervalIndexTree" display_in_upload="True"/> + <datatype extension="snps.iit" type="galaxy.datatypes.gmap:SNPsIntervalIndexTree" display_in_upload="True"/> + <datatype extension="gmap_annotation" type="galaxy.datatypes.gmap:IntervalAnnotation" display_in_upload="False"/> + <datatype extension="gmap_splicesites" type="galaxy.datatypes.gmap:SpliceSiteAnnotation" display_in_upload="True"/> + <datatype extension="gmap_introns" type="galaxy.datatypes.gmap:IntronAnnotation" display_in_upload="True"/> + <datatype extension="gmap_snps" type="galaxy.datatypes.gmap:SNPAnnotation" display_in_upload="True"/> + </registration> + <sniffers> + <sniffer type="galaxy.datatypes.gmap:IntervalAnnotation"/> + <sniffer type="galaxy.datatypes.gmap:SpliceSiteAnnotation"/> + <sniffer type="galaxy.datatypes.gmap:IntronAnnotation"/> + <sniffer type="galaxy.datatypes.gmap:SNPAnnotation"/> + </sniffers> +</datatypes>