Mercurial > repos > jjohnson > mmuff
changeset 5:60a6f2d92058
Adding Galaxy-Workflow-MMuFF.ga (version 1.4 updated for SnpEff v3.2 and snpeff_cds_report v1.2)
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Sun, 26 May 2013 08:17:53 -0500 |
| parents | 6c284cb55352 |
| children | 2aa99b7f90f4 |
| files | Galaxy-Workflow-MMuFF.ga |
| diffstat | 1 files changed, 945 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/Galaxy-Workflow-MMuFF.ga Sun May 26 08:17:53 2013 -0500 @@ -0,0 +1,945 @@ +{ + "a_galaxy_workflow": "true", + "annotation": "", + "format-version": "0.1", + "name": "MMuFF_Human_v1.4", + "steps": { + "0": { + "annotation": "Human RNA-seq paired reads left mates", + "id": 0, + "input_connections": {}, + "inputs": [ + { + "description": "Human RNA-seq paired reads left mates", + "name": "Forward reads fastq" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 240, + "top": 314 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"Forward reads fastq\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "1": { + "annotation": "Human RNA-seq paired reads right mates", + "id": 1, + "input_connections": {}, + "inputs": [ + { + "description": "Human RNA-seq paired reads right mates", + "name": "Reverse reads fastq" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 249, + "top": 410 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"Reverse reads fastq\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "2": { + "annotation": "Known SNPs - dbSNP.vcf", + "id": 2, + "input_connections": {}, + "inputs": [ + { + "description": "Known SNPs - dbSNP.vcf", + "name": "VCF file of known variants (dbSNP)" + } + ], + "name": "Input dataset", + "outputs": [], + "position": { + "left": 2362, + "top": 745 + }, + "tool_errors": null, + "tool_id": null, + "tool_state": "{\"name\": \"VCF file of known variants (dbSNP)\"}", + "tool_version": null, + "type": "data_input", + "user_outputs": [] + }, + "3": { + "annotation": "These are locations other than those in dbSNP. 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