7
|
1 <tool id="mothur_deunique_tree" name="Deunique.tree" version="1.20.0">
|
|
2 <description>Reinsert the redundant sequence identiers back into a unique tree.</description>
|
|
3 <command interpreter="python">
|
|
4 mothur_wrapper.py
|
|
5 --cmd='deunique.tree'
|
|
6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.deunique\.tre$:'$out_tree
|
|
7 --outputdir='$logfile.extra_files_path'
|
|
8 --tree=$tree
|
|
9 --name=$names
|
|
10 </command>
|
|
11 <inputs>
|
|
12 <param name="tree" type="data" format="tre" label="tree - Sequences to filter"/>
|
|
13 <param name="names" type="data" format="names" label="names - Sequences Name reference"/>
|
|
14 </inputs>
|
|
15 <outputs>
|
|
16 <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
|
|
17 <data format_source="tree" name="out_tree" label="${tool.name} on ${on_string}: deunique.tre" />
|
|
18 </outputs>
|
|
19 <requirements>
|
|
20 <requirement type="binary">mothur</requirement>
|
|
21 </requirements>
|
|
22 <tests>
|
|
23 </tests>
|
|
24 <help>
|
|
25 **Mothur Overview**
|
|
26
|
|
27 Mothur_, initiated by Dr. Patrick Schloss and his software development team
|
|
28 in the Department of Microbiology and Immunology at The University of Michigan,
|
|
29 provides bioinformatics for the microbial ecology community.
|
|
30
|
|
31 .. _Mothur: http://www.mothur.org/wiki/Main_Page
|
|
32
|
|
33 **Command Documenation**
|
|
34
|
|
35 The deunique.tree_ command is the reinserts the redundant sequence identiers back into a unique tree using a name_ file.
|
|
36
|
|
37 .. _name: http://www.mothur.org/wiki/Name_file
|
|
38 .. _deunique.tree: http://www.mothur.org/wiki/Deunique.tree
|
|
39
|
|
40
|
|
41 </help>
|
|
42 </tool>
|