annotate mothur/tools/mothur/split.groups.xml @ 0:3202a38e44d9

Migrated tool version 1.15.1 from old tool shed archive to new tool shed repository

<tool id="mothur_split_groups" name="Split.groups" version="1.15.0" force_history_refresh="True">
 <description>Generates a fasta file for each group</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='split.groups'
  --result='^mothur.\S+\.logfile$:'$logfile
  --outputdir='$logfile.extra_files_path'
  --datasetid='$logfile.id' --new_file_path='$__new_file_path__'
  --new_datasets='^\S+?\.(\S+\.fasta)$:fasta'
  --fasta=$fasta
  --group=$group
 </command>
 <inputs>
  <param name="fasta" type="data" format="fasta" label="fasta - Fasta"/>
  <param name="group" type="data" format="groups" label="group - Groups"/>
 </inputs>
 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
 </outputs>
 <requirements>
  <requirement type="binary">mothur</requirement>
 </requirements>
 <tests>
 </tests>
 <help>
**Mothur Overview**

Mothur_, initiated by Dr. Patrick Schloss and his software development team
in the Department of Microbiology and Immunology at The University of Michigan,
provides bioinformatics for the microbial ecology community.

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The split.groups_ command reads a fasta file group file and generates a fasta file for each group in the groupfile. 

.. _split.groups: http://www.mothur.org/wiki/Split.groups

 </help>
</tool>