Mercurial > repos > jjohnson > mothur_toolsuite
annotate mothur/tool-data/mothur_taxonomy.loc.sample @ 16:541e3c97c240
Mothur - fix set_meta for SffFlow in datatypes/metagenomics.py
| author | Jim Johnson <jj@umn.edu> |
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| date | Fri, 09 Dec 2011 12:12:16 -0600 |
| parents | a6189f58fedb |
| children | 09740be2bc9c |
| rev | line source |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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changeset
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1 #This is a sample file distributed with Galaxy that enables tools |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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2 #to use a directory of metagenomics files. |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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3 #file has this format (white space characters are TAB characters): |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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4 # |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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5 # Silva reference files: http://www.mothur.org/wiki/Silva_reference_files |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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6 # |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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7 #<taxonomyname> <file_base> |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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changeset
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8 # |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
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9 archaea.gg /project/db/galaxy/mothur/Silva.archaea/silva.archaea.gg.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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10 archaea.silva /project/db/galaxy/mothur/Silva.archaea/silva.archaea.silva.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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11 archaea.rdp /project/db/galaxy/mothur/Silva.archaea/silva.archaea.rdp.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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12 archaea.ncbi /project/db/galaxy/mothur/Silva.archaea/silva.archaea.ncbi.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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13 bacteria.gg /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.gg.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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14 bacteria.silva /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.silva.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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15 bacteria.ncbi /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.ncbi.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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16 bacteria.rdp /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
changeset
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17 bacteria.rdp6 /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp6.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
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18 eukarya.silva /project/db/galaxy/mothur/silva.eukarya.silva.tax |
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a6189f58fedb
Mothur - updated for Mothur version 1.22.0
Jim Johnson <jj@umn.edu>
parents:
diff
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19 eukarya.ncbi /project/db/galaxy/mothur/silva.eukarya.ncbi.tax |
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a6189f58fedb
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parents:
diff
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20 |