Mercurial > repos > jjohnson > mothur_toolsuite
annotate mothur/tools/mothur/TreeVector.xml @ 33:d53b9eb16c2d
mothur_wrapper.py - convert_value needs to return a String
author | Jim Johnson <jj@umn.edu> |
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date | Wed, 11 Sep 2013 16:56:31 -0500 |
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1 <tool id="tree_vector" name="TreeVector" version="1.0"> |
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2 <description>Draw a Phylogenic Tree</description> |
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3 <command interpreter="python">TreeVector.py |
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4 --jarBin='${GALAXY_DATA_INDEX_DIR}/shared/jars' |
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5 --jarFile='TreeVector.jar' |
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6 --jvmArgs='-Xmx250m' |
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7 --input=$tree |
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8 --svg=$output |
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9 --shape=$shape |
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10 --length=$length |
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11 </command> |
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12 <inputs> |
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13 <param name="tree" type="data" format="tre" label="A Phylogenetic Tree in Newick format"/> |
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14 <param name="shape" type="select" label="Branch Shape"> |
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15 <option value="square">Square branches</option> |
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16 <option value="triangle">Triangle branches</option> |
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17 </param> |
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18 <param name="length" type="select" label="Branch Length"> |
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19 <option value="phylo" selected="true">Use Newick branch lengths</option> |
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20 <option value="clad">Line up labels</option> |
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21 <option value="simpleclad">Branch lengths all same length</option> |
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22 </param> |
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23 </inputs> |
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24 <outputs> |
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25 <data format="svg" name="output"> </data> |
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26 </outputs> |
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27 <tests> |
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28 </tests> |
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29 <help> |
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30 |
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31 TreeVector_ is a utility to create and integrate phylogenetic trees as Scalable Vector Graphics (SVG) files. |
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32 |
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33 TreeVector_ was written by Ralph_Pethica_, Department_of_Computer_Science_, University_of_Bristol_ |
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34 |
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35 .. _TreeVector: http://supfam.cs.bris.ac.uk/TreeVector/about.html |
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36 .. _Ralph_Pethica: http://www.cs.bris.ac.uk/home/pethica/ |
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37 .. _Department_of_Computer_Science: http://www.cs.bris.ac.uk/ |
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38 .. _University_of_Bristol: http://www.bris.ac.uk/ |
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39 |
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40 </help> |
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41 </tool> |
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42 |