Mercurial > repos > jjohnson > mothur_toolsuite
annotate mothur/tools/mothur/make.group.xml @ 2:e990ac8a0f58
Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
author | jjohnson |
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date | Tue, 07 Jun 2011 17:39:06 -0400 |
parents | fcc0778f6987 |
children | 49058b1f8d3f |
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Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
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1 <tool id="mothur_make_files" name="Make.group" version="1.19.0"> |
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2 <description>Make a group file</description> |
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3 <command interpreter="python"> |
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4 mothur_wrapper.py |
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5 --cmd='make.group' |
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6 --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.group:'$output |
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7 --outputdir='$logfile.extra_files_path' |
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8 --fasta=${fasta}#for i in $inputs#,${i.fasta}#end for# |
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9 --groups=${group}#for i in $inputs#,${i.group}#end for# |
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10 </command> |
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11 <inputs> |
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12 <param name="fasta" type="data" format="fasta" label="fasta - Fasta to group"/> |
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13 <param name="group" type="text" label="group - Group name"/> |
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14 <repeat name="inputs" title="Additional"> |
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15 <param name="fasta" type="data" format="fasta" label="fasta - Fasta to group"/> |
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16 <param name="group" type="text" label="group - Group name"/> |
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17 </repeat> |
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18 </inputs> |
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19 <outputs> |
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20 <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" /> |
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21 <data format="groups" name="output" label="${tool.name} on ${on_string}: group" /> |
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22 </outputs> |
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23 <requirements> |
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24 <requirement type="binary">mothur</requirement> |
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25 </requirements> |
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26 <tests> |
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27 </tests> |
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28 <help> |
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29 **Mothur Overview** |
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30 |
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31 Mothur_, initiated by Dr. Patrick Schloss and his software development team |
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32 in the Department of Microbiology and Immunology at The University of Michigan, |
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33 provides bioinformatics for the microbial ecology community. |
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34 |
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35 .. _Mothur: http://www.mothur.org/wiki/Main_Page |
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36 |
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37 **Command Documenation** |
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38 |
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39 The make.group_ command reads a fasta file or series of fasta files and creates a group_ file. |
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40 |
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41 .. _group: http://www.mothur.org/wiki/Group_file |
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42 .. _make.group: http://www.mothur.org/wiki/Make.group |
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43 |
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44 |
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45 </help> |
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46 </tool> |