Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tools/mothur/collect.single.xml @ 25:bfbaf823be4c
Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Wed, 16 May 2012 12:28:44 -0500 |
| parents | 97e35ab2887c |
| children | 49058b1f8d3f |
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| 24:09740be2bc9c | 25:bfbaf823be4c |
|---|---|
| 35 #end if | 35 #end if |
| 36 </command> | 36 </command> |
| 37 <inputs> | 37 <inputs> |
| 38 <param name="otu" type="data" format="list,rabund,sabund,shared" label="list,rabund,sabund,shared - OTU List"/> | 38 <param name="otu" type="data" format="list,rabund,sabund,shared" label="list,rabund,sabund,shared - OTU List"/> |
| 39 <param name="label" type="select" label="label - OTU Labels" multiple="true"> | 39 <param name="label" type="select" label="label - OTU Labels" multiple="true"> |
| 40 <options from_dataset="otu"> | 40 <options> |
| 41 <column name="name" index="0"/> | 41 <filter type="data_meta" ref="otu" key="labels" /> |
| 42 <column name="value" index="0"/> | |
| 43 <filter type="unique_value" name="unq_lbl" column="0" /> | |
| 44 </options> | 42 </options> |
| 45 </param> | 43 </param> |
| 46 <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true"> | 44 <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true"> |
| 47 <option value="ace" selected="true">ace - Community richness the ACE estimator</option> | 45 <option value="ace" selected="true">ace - Community richness the ACE estimator</option> |
| 48 <option value="bootstrap">bootstrap - Community richness the bootstrap estimator</option> | 46 <option value="bootstrap">bootstrap - Community richness the bootstrap estimator</option> |