Mercurial > repos > jjohnson > mothur_toolsuite

diff mothur/tools/mothur/collect.single.xml @ 25:bfbaf823be4c

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Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.
author Jim Johnson <jj@umn.edu>
date Wed, 16 May 2012 12:28:44 -0500
parents 97e35ab2887c
children 49058b1f8d3f
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line diff
--- a/mothur/tools/mothur/collect.single.xml	Wed Mar 28 15:45:03 2012 -0500
+++ b/mothur/tools/mothur/collect.single.xml	Wed May 16 12:28:44 2012 -0500
@@ -37,10 +37,8 @@
  <inputs>
   <param name="otu" type="data" format="list,rabund,sabund,shared" label="list,rabund,sabund,shared - OTU List"/>
   <param name="label" type="select" label="label - OTU Labels" multiple="true">
-   <options from_dataset="otu">
-    <column name="name" index="0"/>
-    <column name="value" index="0"/>
-    <filter type="unique_value" name="unq_lbl" column="0" />
+   <options>
+    <filter type="data_meta" ref="otu" key="labels" />
    </options>
   </param>
   <param name="calc" type="select" label="calc - Calculators (Uses defaults if none selected)" multiple="true">