comparison mothur/tools/mothur/libshuff.xml @ 25:bfbaf823be4c

Change metagenomics datatypes to include labels and groups metadata. change Mothur tool configs to get label and group select options from a data_meta filter rather than using the options from_dataset attribute. This grealty decreases memory demand for the galaxy server.

24:09740be2bc9c

 </command>
 <inputs>
  <param name="dist" type="data" format="lower.dist,square.dist" label="phylip - Distance Matrix"/>
  <param name="group" type="data" format="groups" label="group - Groups"/>
  <param name="groups" type="select" label="groups - Groups to condider" multiple="true">
   <options from_dataset="group">
    <column name="name" index="1"/>
    <column name="value" index="1"/>
    <filter type="unique_value" name="unq_grp" column="1" />
   </options>
  </param>
  <param name="iters" type="integer" value="10000" label="iters - Number of iterations to try (default 10000)"/>
  <param name="sim" type="boolean" checked="false" truevalue="--sim=true" falsevalue="" label="sim - Matrix values are Similary instead of Distance" help=""/>
  <conditional name="form">

25:bfbaf823be4c

 </command>
 <inputs>
  <param name="dist" type="data" format="lower.dist,square.dist" label="phylip - Distance Matrix"/>
  <param name="group" type="data" format="groups" label="group - Groups"/>
  <param name="groups" type="select" label="groups - Groups to condider" multiple="true">
   <options>
    <filter type="data_meta" ref="group" key="groups" />
   </options>
  </param>
  <param name="iters" type="integer" value="10000" label="iters - Number of iterations to try (default 10000)"/>
  <param name="sim" type="boolean" checked="false" truevalue="--sim=true" falsevalue="" label="sim - Matrix values are Similary instead of Distance" help=""/>
  <conditional name="form">