Mercurial > repos > jjohnson > mothur_toolsuite
comparison mothur/tool-data/mothur_calculators.loc @ 2:e990ac8a0f58
Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:39:06 -0400 |
| parents | fcc0778f6987 |
| children | a6189f58fedb |
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| 1:fcc0778f6987 | 2:e990ac8a0f58 |
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| 24 ace single sing Community richness the ACE estimator | 24 ace single sing Community richness the ACE estimator |
| 25 bootstrap single sing Community richness the bootstrap estimator | 25 bootstrap single sing Community richness the bootstrap estimator |
| 26 chao single sing Community richness the Chao1 estimator | 26 chao single sing Community richness the Chao1 estimator |
| 27 jack single sing Community richness the jackknife estimator | 27 jack single sing Community richness the jackknife estimator |
| 28 sobs single sing Community richness the observed richness | 28 sobs single sing Community richness the observed richness |
| 29 ##Community evenness | |
| 30 simpsoneven single sing Community evenness a Simpson index-based measure of evenness | |
| 31 shannoneven single sing Community evenness a Shannon index-based measure of evenness | |
| 32 heip single sing Community evenness Heip's metric of community evenness | |
| 33 smithwilson single sing Community evenness Smith and Wilson's metric of community evenness | |
| 29 ##Community diversity | 34 ##Community diversity |
| 30 bergerparker single xxxx Community diversity the Berger-Parker index | 35 bergerparker single xxxx Community diversity the Berger-Parker index |
| 31 coverage single sing Community diversity the sampling coverage coverage | 36 coverage single sing Community diversity the sampling coverage |
| 37 goodscoverage single sing Community diversity the Good's estimate of sampling coverage | |
| 32 invsimpson single sing Community diversity the Simpson index | 38 invsimpson single sing Community diversity the Simpson index |
| 33 npshannon single sing Community diversity the non-parametric Shannon index | 39 npshannon single sing Community diversity the non-parametric Shannon index |
| 34 qstat single xxxx Community diversity the Q statistic | 40 qstat single xxxx Community diversity the Q statistic |
| 35 shannon single sing Community diversity the Shannon index | 41 shannon single sing Community diversity the Shannon index |
| 36 simpson single sing Community diversity the Simpson index | 42 simpson single sing Community diversity the Simpson index |
| 37 simpsoneven single sing Community diversity the Simpson index | |
| 38 smithwilson single sing Smith and Wilson's metric of community evenness | |
| 39 ##Estimates of number of additional OTUs observed with extra sampling | 43 ##Estimates of number of additional OTUs observed with extra sampling |
| 40 boneh single xxxx Estimator Boneh's estimator | 44 boneh single xxxx Estimator Boneh's estimator |
| 41 efron single xxxx Estimator Efron's estimator | 45 efron single xxxx Estimator Efron's estimator |
| 42 shen single xxxx Estimator Shen's estimator | 46 shen single xxxx Estimator Shen's estimator |
| 43 solow single xxxx Estimator Solow's estimator | 47 solow single xxxx Estimator Solow's estimator |
| 53 anderberg shared xxxx Community Membership Similarity the Anderberg similarity coefficient | 57 anderberg shared xxxx Community Membership Similarity the Anderberg similarity coefficient |
| 54 jclass shared shar Community Membership Similarity the traditional Jaccard similarity coefficient based on the observed richness | 58 jclass shared shar Community Membership Similarity the traditional Jaccard similarity coefficient based on the observed richness |
| 55 jest shared shar Community Membership Similarity the Jaccard similarity coefficient based on the Chao1 estimated richnesses | 59 jest shared shar Community Membership Similarity the Jaccard similarity coefficient based on the Chao1 estimated richnesses |
| 56 kulczynski shared xxxx Community Membership Similarity the Kulczynski similarity coefficient | 60 kulczynski shared xxxx Community Membership Similarity the Kulczynski similarity coefficient |
| 57 kulczynskicody shared xxxx Community Membership Similarity the Kulczynski-Cody similarity coefficient | 61 kulczynskicody shared xxxx Community Membership Similarity the Kulczynski-Cody similarity coefficient |
| 62 kstest shared xxxx Kolmogorov-Smirnov test | |
| 58 lennon shared xxxx Community Membership Similarity the Lennon similarity coefficient | 63 lennon shared xxxx Community Membership Similarity the Lennon similarity coefficient |
| 59 ochiai shared xxxx Community Membership Similarity the Ochiai similarity coefficient | 64 ochiai shared xxxx Community Membership Similarity the Ochiai similarity coefficient |
| 60 sorclass shared shar Community Membership Similarity the Sorenson similarity coefficient based on the observed richness | 65 sorclass shared shar Community Membership Similarity the Sorenson similarity coefficient based on the observed richness |
| 61 sorest shared shar Community Membership Similarity the Sorenson similarity coefficient based on the Chao1 estimated richnesses | 66 sorest shared shar Community Membership Similarity the Sorenson similarity coefficient based on the Chao1 estimated richnesses |
| 62 whittaker shared xxxx Community Membership Similarity the Whittaker similarity coefficient | 67 whittaker shared xxxx Community Membership Similarity the Whittaker similarity coefficient |