Mercurial > repos > jjohnson > mothur_toolsuite
diff mothur/tool-data/mothur_calculators.loc @ 2:e990ac8a0f58
Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:39:06 -0400 |
| parents | fcc0778f6987 |
| children | a6189f58fedb |
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--- a/mothur/tool-data/mothur_calculators.loc Tue Jun 07 17:35:35 2011 -0400 +++ b/mothur/tool-data/mothur_calculators.loc Tue Jun 07 17:39:06 2011 -0400 @@ -26,16 +26,20 @@ chao single sing Community richness the Chao1 estimator jack single sing Community richness the jackknife estimator sobs single sing Community richness the observed richness +##Community evenness +simpsoneven single sing Community evenness a Simpson index-based measure of evenness +shannoneven single sing Community evenness a Shannon index-based measure of evenness +heip single sing Community evenness Heip's metric of community evenness +smithwilson single sing Community evenness Smith and Wilson's metric of community evenness ##Community diversity bergerparker single xxxx Community diversity the Berger-Parker index -coverage single sing Community diversity the sampling coverage coverage +coverage single sing Community diversity the sampling coverage +goodscoverage single sing Community diversity the Good's estimate of sampling coverage invsimpson single sing Community diversity the Simpson index npshannon single sing Community diversity the non-parametric Shannon index qstat single xxxx Community diversity the Q statistic shannon single sing Community diversity the Shannon index simpson single sing Community diversity the Simpson index -simpsoneven single sing Community diversity the Simpson index -smithwilson single sing Smith and Wilson's metric of community evenness ##Estimates of number of additional OTUs observed with extra sampling boneh single xxxx Estimator Boneh's estimator efron single xxxx Estimator Efron's estimator @@ -55,6 +59,7 @@ jest shared shar Community Membership Similarity the Jaccard similarity coefficient based on the Chao1 estimated richnesses kulczynski shared xxxx Community Membership Similarity the Kulczynski similarity coefficient kulczynskicody shared xxxx Community Membership Similarity the Kulczynski-Cody similarity coefficient +kstest shared xxxx Kolmogorov-Smirnov test lennon shared xxxx Community Membership Similarity the Lennon similarity coefficient ochiai shared xxxx Community Membership Similarity the Ochiai similarity coefficient sorclass shared shar Community Membership Similarity the Sorenson similarity coefficient based on the observed richness