comparison mothur/tools/mothur/dist.seqs.xml @ 2:e990ac8a0f58

Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository

1:fcc0778f6987

<tool id="mothur_dist_seqs" name="Dist.seqs" version="1.16.0">
 <description>calculate uncorrected pairwise distances between aligned sequences</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='dist.seqs'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.dist$:'$out_dist

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The dist.seqs_ command will calculate uncorrected pairwise distances between aligned sequences.

.. _dist.seqs: http://www.mothur.org/wiki/Dist.seqs


 </help>
</tool>

2:e990ac8a0f58

<tool id="mothur_dist_seqs" name="Dist.seqs" version="1.19.0">
 <description>calculate uncorrected pairwise distances between aligned sequences</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='dist.seqs'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.dist$:'$out_dist

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The dist.seqs_ command will calculate uncorrected pairwise distances between aligned sequences.  The command will generate a column-formatted_distance_matrix_ that is compatible with the column option in the read.dist command. The command is also able to generate a phylip-formatted_distance_matrix_. There are several options for how to handle gap comparisons and terminal gaps. 

.. _column-formatted_distance_matrix: http://www.mothur.org/wiki/Column-formatted_distance_matrix
.. _phylip-formatted_distance_matrix: http://www.mothur.org/wiki/Phylip-formatted_distance_matrix
.. _dist.seqs: http://www.mothur.org/wiki/Dist.seqs


 </help>
</tool>