Mercurial > repos > jjohnson > mothur_toolsuite
diff mothur/tools/mothur/dist.seqs.xml @ 2:e990ac8a0f58
Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository
| author | jjohnson |
|---|---|
| date | Tue, 07 Jun 2011 17:39:06 -0400 |
| parents | fcc0778f6987 |
| children | 4f797d3eee3a |
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--- a/mothur/tools/mothur/dist.seqs.xml Tue Jun 07 17:35:35 2011 -0400 +++ b/mothur/tools/mothur/dist.seqs.xml Tue Jun 07 17:39:06 2011 -0400 @@ -1,4 +1,4 @@ -<tool id="mothur_dist_seqs" name="Dist.seqs" version="1.16.0"> +<tool id="mothur_dist_seqs" name="Dist.seqs" version="1.19.0"> <description>calculate uncorrected pairwise distances between aligned sequences</description> <command interpreter="python"> mothur_wrapper.py @@ -64,8 +64,10 @@ **Command Documenation** -The dist.seqs_ command will calculate uncorrected pairwise distances between aligned sequences. +The dist.seqs_ command will calculate uncorrected pairwise distances between aligned sequences. The command will generate a column-formatted_distance_matrix_ that is compatible with the column option in the read.dist command. The command is also able to generate a phylip-formatted_distance_matrix_. There are several options for how to handle gap comparisons and terminal gaps. +.. _column-formatted_distance_matrix: http://www.mothur.org/wiki/Column-formatted_distance_matrix +.. _phylip-formatted_distance_matrix: http://www.mothur.org/wiki/Phylip-formatted_distance_matrix .. _dist.seqs: http://www.mothur.org/wiki/Dist.seqs