comparison mothur/tools/mothur/reverse.seqs.xml @ 2:e990ac8a0f58

Migrated tool version 1.19.0 from old tool shed archive to new tool shed repository

1:fcc0778f6987

<tool id="mothur_reverse_seqs" name="Reverse.seqs" version="1.16.0">
 <description>Reverse complement the sequences</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='reverse.seqs'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.rc\.\w+$:'$out_fasta
  --outputdir='$logfile.extra_files_path'
  --fasta=$fasta
 </command>
 <inputs>
  <param name="fasta" type="data" format="fasta" label="fasta - Sequences to reverse complement"/>
 </inputs>
 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
  <data format="fasta" name="out_fasta" label="${tool.name} on ${on_string}: rc.fasta" />
 </outputs>
 <requirements>
  <requirement type="binary">mothur</requirement>
 </requirements>
 <tests>

2:e990ac8a0f58

<tool id="mothur_reverse_seqs" name="Reverse.seqs" version="1.19.0">
 <description>Reverse complement the sequences</description>
 <command interpreter="python">
  mothur_wrapper.py 
  --cmd='reverse.seqs'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.rc\.\w+$:'$out_fasta
  --outputdir='$logfile.extra_files_path'
  --fasta=$fasta
 </command>
 <inputs>
  <param name="fasta" type="data" format="fasta,align" label="fasta - Sequences to reverse complement"/>
 </inputs>
 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
  <data format_source="fasta" name="out_fasta" label="${tool.name} on ${on_string}: rc.fasta" />
 </outputs>
 <requirements>
  <requirement type="binary">mothur</requirement>
 </requirements>
 <tests>