Mercurial > repos > jjohnson > mothur_toolsuite

<tool id="mothur_reverse_seqs" name="Reverse.seqs" version="1.20.0">
 <description>Reverse complement the sequences</description>
 <command interpreter="python">
  mothur_wrapper.py
  --cmd='reverse.seqs'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.rc\.\w+$:'$out_fasta
  --outputdir='$logfile.extra_files_path'
  --fasta=$fasta
 </command>
 <inputs>
  <param name="fasta" type="data" format="fasta,align" label="fasta - Sequences to reverse complement"/>
 </inputs>
 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
  <data format_source="fasta" name="out_fasta" label="${tool.name} on ${on_string}: rc.fasta" />
 </outputs>
 <requirements>
  <requirement type="package" version="1.33">mothur</requirement>
 </requirements>
 <tests>
 </tests>
 <help>
**Mothur Overview**

Mothur_, initiated by Dr. Patrick Schloss and his software development team
in the Department of Microbiology and Immunology at The University of Michigan,
provides bioinformatics for the microbial ecology community.

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The reverse.seqs_ command will generate a fasta containing the reverse complement of each sequence in the input fasta.

.. _reverse.seqs: http://www.mothur.org/wiki/Reverse.seqs

 </help>
</tool>
author	galaxyuser <galaxy_user@agr.g.ca>
date	Mon, 10 Nov 2014 15:40:02 -0500
parents	95d75b35e4d2
children