Mercurial > repos > jjohnson > mothur_toolsuite
view mothur/tools/mothur/get.group.xml @ 13:4f797d3eee3a
Change default processor counts to 8, mothur_wrapper.py can overide processors allocated with ENVIRONMENT variable MOTHUR_MAX_PROCESSORS
author | Jim Johnson <jj@umn.edu> |
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date | Wed, 05 Oct 2011 10:34:44 -0500 |
parents | e990ac8a0f58 |
children | 49058b1f8d3f |
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<tool id="mothur_get_group" name="Get.group" version="1.19.0"> <description>group names from shared or from list and group</description> <command interpreter="python"> mothur_wrapper.py --cmd='get.group' --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.bootGroups$:'$bootgroups --outputdir='$logfile.extra_files_path' --shared=$otu </command> <inputs> <param name="otu" type="data" format="shared" label="shared - OTU Shared"/> </inputs> <outputs> <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" /> <data format="groups" name="bootgroups" label="${tool.name} on ${on_string}: bootGroups" /> </outputs> <requirements> <requirement type="binary">mothur</requirement> </requirements> <tests> </tests> <help> **Mothur Overview** Mothur_, initiated by Dr. Patrick Schloss and his software development team in the Department of Microbiology and Immunology at The University of Michigan, provides bioinformatics for the microbial ecology community. .. _Mothur: http://www.mothur.org/wiki/Main_Page **Command Documenation** The get.group_ command generate principle components plot data. .. _get.group: http://www.mothur.org/wiki/Get.group </help> </tool>