Mercurial > repos > jjohnson > mothur_toolsuite

<tool id="mothur_get_group" name="Get.group" version="1.20.0">
 <description>group names from shared or from list and group</description>
 <command interpreter="python">
  mothur_wrapper.py
  --cmd='get.group'
  --result='^mothur.\S+\.logfile$:'$logfile,'^\S+\.bootGroups$:'$bootgroups
  --outputdir='$logfile.extra_files_path'
  --shared=$otu
 </command>
 <inputs>
  <param name="otu" type="data" format="shared" label="shared - OTU Shared"/>
 </inputs>
 <outputs>
  <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
  <data format="groups" name="bootgroups" label="${tool.name} on ${on_string}: bootGroups" />
 </outputs>
 <requirements>
  <requirement type="package" version="1.33">mothur</requirement>
 </requirements>
 <tests>
 </tests>
 <help>
**Mothur Overview**

Mothur_, initiated by Dr. Patrick Schloss and his software development team
in the Department of Microbiology and Immunology at The University of Michigan,
provides bioinformatics for the microbial ecology community.

.. _Mothur: http://www.mothur.org/wiki/Main_Page

**Command Documenation**

The get.group_ command generate principle components plot data.

.. _get.group: http://www.mothur.org/wiki/Get.group

v.1.20.0: Updated to Mothur 1.33

 </help>
</tool>
author	galaxyuser <galaxy_user@agr.g.ca>
date	Mon, 10 Nov 2014 15:40:02 -0500
parents	95d75b35e4d2
children