Mercurial > repos > jjohnson > mothur_toolsuite
changeset 9:9181ff21b48a
Add name param to classify.otu
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Fri, 08 Jul 2011 12:13:46 -0500 |
| parents | 3249eb52a9c1 |
| children | 29db8b6184ea |
| files | mothur/tools/mothur/classify.otu.xml |
| diffstat | 1 files changed, 4 insertions(+), 0 deletions(-) [+] |
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--- a/mothur/tools/mothur/classify.otu.xml Tue Jul 05 13:07:40 2011 -0500 +++ b/mothur/tools/mothur/classify.otu.xml Fri Jul 08 12:13:46 2011 -0500 @@ -9,6 +9,9 @@ --new_datasets='^\S+?\.(unique|[0-9.]*\.cons\.taxonomy)$:cons.taxonomy','^\S+?\.(unique|[0-9.]*\.cons\.tax\.summary)$:tax.summary' --list=$otu --taxonomy=$tax.taxonomy + #if $name.__str__ != "None" and len($name.__str__) > 0: + --name='$name' + #end if #if $reftax.source != 'none' and len($reftax.taxonomy.__str__) > 0: --reftaxonomy=$reftax.taxonomy #end if @@ -26,6 +29,7 @@ </command> <inputs> <param name="otu" type="data" format="list" label="list - OTU List "/> + <param name="name" type="data" format="names" optional="true" label="name - taxonomy sequence names"/> <conditional name="tax"> <param name="source" type="select" label="Select Taxonomy from" help=""> <option value="hist">History</option>