Mercurial > repos > jjohnson > mothur_toolsuite
changeset 22:ed906f8149bb
Mothur - html escape amperand in calculator option label
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Thu, 19 Jan 2012 10:34:04 -0600 |
parents | 97e35ab2887c |
children | efd36aa39261 |
files | mothur/tools/mothur/collect.shared.xml mothur/tools/mothur/dist.shared.xml mothur/tools/mothur/heatmap.sim.xml mothur/tools/mothur/summary.qual.xml mothur/tools/mothur/summary.shared.xml mothur/tools/mothur/tree.shared.xml |
diffstat | 6 files changed, 10 insertions(+), 10 deletions(-) [+] |
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--- a/mothur/tools/mothur/collect.shared.xml Tue Jan 17 14:42:27 2012 -0600 +++ b/mothur/tools/mothur/collect.shared.xml Thu Jan 19 10:34:04 2012 -0600 @@ -1,4 +1,4 @@ -<tool id="mothur_collect_shared" name="Collect.shared" version="1.20.0" force_history_refresh="True"> +<tool id="mothur_collect_shared" name="Collect.shared" version="1.23.0" force_history_refresh="True"> <description>Generate collector's curves for calculators on OTUs</description> <command interpreter="python"> mothur_wrapper.py @@ -67,7 +67,7 @@ <option value="morisitahorn">morisitahorn - Community Structure Similarity the Morisita-Horn similarity coefficient</option> <option value="sorabund" selected="true">sorabund - Community Structure Similarity the abundance-based Sorenson similarity coefficient</option> <option value="thetan" selected="true">thetan - Community Structure Similarity the Smith theta similarity coefficient</option> - <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> + <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> <option value="canberra">canberra - Community Structure Similarity -</option> <option value="gower">gower - Community Structure Similarity -</option> <option value="hellinger">hellinger - Community Structure Similarity -</option>
--- a/mothur/tools/mothur/dist.shared.xml Tue Jan 17 14:42:27 2012 -0600 +++ b/mothur/tools/mothur/dist.shared.xml Thu Jan 19 10:34:04 2012 -0600 @@ -1,4 +1,4 @@ -<tool id="mothur_dist_shared" name="Dist.shared" version="1.20.0" force_history_refresh="True"> +<tool id="mothur_dist_shared" name="Dist.shared" version="1.23.0" force_history_refresh="True"> <description>Generate a phylip-formatted dissimilarity distance matrix among multiple groups</description> <command interpreter="python"> mothur_wrapper.py @@ -76,7 +76,7 @@ <option value="morisitahorn">morisitahorn - Community Structure Similarity the Morisita-Horn similarity coefficient</option> <option value="sorabund">sorabund - Community Structure Similarity the abundance-based Sorenson similarity coefficient</option> <option value="thetan">thetan - Community Structure Similarity the Smith theta similarity coefficient</option> - <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> + <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> <option value="canberra">canberra - Community Structure Similarity -</option> <option value="gower">gower - Community Structure Similarity -</option> <option value="hellinger">hellinger - Community Structure Similarity -</option>
--- a/mothur/tools/mothur/heatmap.sim.xml Tue Jan 17 14:42:27 2012 -0600 +++ b/mothur/tools/mothur/heatmap.sim.xml Thu Jan 19 10:34:04 2012 -0600 @@ -71,7 +71,7 @@ <option value="morisitahorn">morisitahorn - Community Structure Similarity the Morisita-Horn similarity coefficient</option> <option value="sorabund">sorabund - Community Structure Similarity the abundance-based Sorenson similarity coefficient</option> <option value="thetan">thetan - Community Structure Similarity the Smith theta similarity coefficient</option> - <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> + <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> </param> </when> <when value="column">
--- a/mothur/tools/mothur/summary.qual.xml Tue Jan 17 14:42:27 2012 -0600 +++ b/mothur/tools/mothur/summary.qual.xml Thu Jan 19 10:34:04 2012 -0600 @@ -13,7 +13,7 @@ </command> <inputs> <param name="qfile" type="data" format="qual" label="qfile - Sequence Quality file"/> - <param name="name" type="data" format="names" optional="true" label="name - Names" optional="true"/> + <param name="name" type="data" format="names" optional="true" label="name - Names"/> </inputs> <outputs> <data format="html" name="logfile" label="${tool.name} on ${on_string}: logfile" />
--- a/mothur/tools/mothur/summary.shared.xml Tue Jan 17 14:42:27 2012 -0600 +++ b/mothur/tools/mothur/summary.shared.xml Thu Jan 19 10:34:04 2012 -0600 @@ -1,4 +1,4 @@ -<tool id="mothur_summary_shared" name="Summary.shared" version="1.20.0" force_history_refresh="True"> +<tool id="mothur_summary_shared" name="Summary.shared" version="1.23.0" force_history_refresh="True"> <description>Summary of calculator values for OTUs</description> <command interpreter="python"> mothur_wrapper.py @@ -64,7 +64,7 @@ <option value="morisitahorn">morisitahorn - Community Structure Similarity the Morisita-Horn similarity coefficient</option> <option value="sorabund" selected="true">sorabund - Community Structure Similarity the abundance-based Sorenson similarity coefficient</option> <option value="thetan" selected="true">thetan - Community Structure Similarity the Smith theta similarity coefficient</option> - <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> + <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> <option value="canberra">canberra - Community Structure Similarity -</option> <option value="gower">gower - Community Structure Similarity -</option> <option value="hellinger">hellinger - Community Structure Similarity -</option>
--- a/mothur/tools/mothur/tree.shared.xml Tue Jan 17 14:42:27 2012 -0600 +++ b/mothur/tools/mothur/tree.shared.xml Thu Jan 19 10:34:04 2012 -0600 @@ -1,4 +1,4 @@ -<tool id="mothur_tree_shared" name="Tree.shared" version="1.20.0" force_history_refresh="True"> +<tool id="mothur_tree_shared" name="Tree.shared" version="1.23.0" force_history_refresh="True"> <description>Generate a newick tree for dissimilarity among groups</description> <command interpreter="python"> mothur_wrapper.py @@ -95,7 +95,7 @@ <option value="morisitahorn">morisitahorn - Community Structure Similarity the Morisita-Horn similarity coefficient</option> <option value="sorabund">sorabund - Community Structure Similarity the abundance-based Sorenson similarity coefficient</option> <option value="thetan">thetan - Community Structure Similarity the Smith theta similarity coefficient</option> - <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> + <option value="thetayc" selected="true">thetayc - Community Structure Similarity the Yue & Clayton theta similarity coefficient</option> <option value="canberra">canberra - Community Structure Similarity -</option> <option value="gower">gower - Community Structure Similarity -</option> <option value="hellinger">hellinger - Community Structure Similarity -</option>