Mercurial > repos > jjohnson > package_shear_0_2_7

changeset 0:f64a3597da37 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author jjohnson
date Thu, 30 Jan 2014 15:34:31 -0500
parents
children
files tool_dependencies.xml
diffstat 1 files changed, 24 insertions(+), 0 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Thu Jan 30 15:34:31 2014 -0500
@@ -0,0 +1,24 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="shear" version="0.2.7">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">http://vk.cs.umn.edu/SHEAR/downloads/shear-v0.2.7-compiled.tar.gz</action>
+                <action type="move_directory_files">
+                    <source_directory>.</source_directory>
+                    <destination_directory>$INSTALL_DIR</destination_directory>
+                </action>
+                <action type="set_environment">
+                    <environment_variable name="SHEAR_JAR_PATH" action="set_to">$INSTALL_DIR</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+SHEAR: Sample Heterogeneity Estimation and Assembly by Reference
+
+SHEAR is an assembly tool that accounts for heterogeneous variants by estimating their representative percentages and allowing for selective assembly of sample subpopulations. By utilizing structural variant detection algorithms, SHEAR also offers improved performance in the form of a stronger ability to handle difficult structural variant types and improved computational efficiency.
+
+http://vk.cs.umn.edu/SHEAR/
+        </readme>
+    </package>
+</tool_dependency>