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annotate README @ 8:07cd87e94fbe

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Add REAMDE
author Jim Johnson <jj@umn.edu>
date Thu, 28 Mar 2013 14:55:50 -0500
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children c0a6e8f595ec
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07cd87e94fbe Add REAMDE
Jim Johnson <jj@umn.edu>
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1 Cconverts the tabular pileup output from samtools mpileup to a VCF file.
07cd87e94fbe Add REAMDE
Jim Johnson <jj@umn.edu>
parents:
diff changeset
2 Filters on read coverage, base quality and the frequency of a variant.
07cd87e94fbe Add REAMDE
Jim Johnson <jj@umn.edu>
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3 The VCF info is populated with a SAF tag that give the specific frequency (0 - 1) of a variant being observed.
07cd87e94fbe Add REAMDE
Jim Johnson <jj@umn.edu>
parents:
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4 This is used for filtering in the mmuff ( Missense Mutation and Frameshift Finder) workflow.
07cd87e94fbe Add REAMDE
Jim Johnson <jj@umn.edu>
parents:
diff changeset
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