Mercurial > repos > jjohnson > pileup_to_vcf
diff test-data/test.pileup @ 1:bb0ac51f1b02
Handle delection char: *
| author | Jim Johnson <jj@umn.edu> |
|---|---|
| date | Mon, 18 Feb 2013 19:11:47 -0600 |
| parents | 3890f8ba0e4d |
| children |
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--- a/test-data/test.pileup Mon Feb 18 11:32:50 2013 -0500 +++ b/test-data/test.pileup Mon Feb 18 19:11:47 2013 -0600 @@ -8,6 +8,7 @@ seq1 279 C 23 A..T,,.,.,...,,,.,..... ;75&<<<<<<<<<=<<<9<<:<< seq2 156 A 11 .$......+2AG.+2AG.+2AGGG <975;:<<<<< seq3 200 A 20 ,,,,,..,.-4CACC.-4CACC....,.,,.^~. ==<<<<<<<<<<<::<;2<< +chr1 44520828 C 35 *********************************** !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! chr1 95935183 G 34 .,.,,,+1c,+1c.+1C,+1c,+1c.+1C.+1C.+1C,+1c.+1C,+1c,+1c.+1C,+1c,+1c.+1C,+1c.+1C.+1C,+1c,+1c,+1c.+1C.+1C.+1C.+1C.+1C^~c^~c IFEGIHIBIIIBAGIDI@IHCIIGHIHHEIIG!! chr1 158571283 A 8 <,.c.c^~t^~c GIC#I#'! chr6 125070485 C 216 <><<>>>>>>><<>>>><<<><<<<<>>>>><>>>>>><>>>>>>><><><>><><><>><>><<><<<>>>><<<>>>><<>>>><<<<<<<<<<<><<<<<<<><><<<<<><<<>><<<<<<<<>>>><<<<<<><><>>>>>>>>>>><<<<<<>><<<<>><><>>>>><>...,,,,,,,GGGGGGggggggGGGGggggggggg^~G^~g^~g^~g^~g IHHH:GFDH<H@IHCEIIIIHIIIDI#EACGGIEHB#HDHEBHGGDI?BHIEIIIGHBHIEDIIHHHIGHFIIDI<IIIIEEIIIIGAHIHEGGIBHBIHE;@CFIBHGGCDBGDGGGIIDC@GEAGDIHIIEEHBIIGIEGHIHHIHHHH2@G#>EBHICD@#GHHHFI9HII#I##AIIIE5@G!!!!!!!!!#!!!!!!!!$$!!$!$!#!!!