changeset 8:07cd87e94fbe

Add REAMDE
author Jim Johnson <jj@umn.edu>
date Thu, 28 Mar 2013 14:55:50 -0500
parents e77ab15bbce9
children c0a6e8f595ec
files README
diffstat 1 files changed, 5 insertions(+), 0 deletions(-) [+]
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+Cconverts the tabular pileup output from samtools mpileup to a VCF file.  
+Filters on read coverage, base quality and the frequency of a variant.  
+The VCF info is populated with a SAF tag that give the specific frequency (0 - 1) of a variant being observed.
+This is used for filtering in the mmuff ( Missense Mutation and Frameshift Finder) workflow.
+