Mercurial > repos > jjohnson > pileup_to_vcf
changeset 8:07cd87e94fbe
Add REAMDE
author | Jim Johnson <jj@umn.edu> |
---|---|
date | Thu, 28 Mar 2013 14:55:50 -0500 |
parents | e77ab15bbce9 |
children | c0a6e8f595ec |
files | README |
diffstat | 1 files changed, 5 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README Thu Mar 28 14:55:50 2013 -0500 @@ -0,0 +1,5 @@ +Cconverts the tabular pileup output from samtools mpileup to a VCF file. +Filters on read coverage, base quality and the frequency of a variant. +The VCF info is populated with a SAF tag that give the specific frequency (0 - 1) of a variant being observed. +This is used for filtering in the mmuff ( Missense Mutation and Frameshift Finder) workflow. +