comparison poller.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

0:e5c3175506b7

<tool id="poller" name="poller" version="1.2.0">
 <description>Poller for parallel QIIME scripts.</description>
 <requirements>
  <requirement type="binary">poller.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  poller.py
  --check_run_complete_file=$check_run_complete_file
  --check_run_complete_f=$check_run_complete_f
  --process_run_results_f=$process_run_results_f
  --process_run_results_file=$process_run_results_file
  --clean_up_f=$clean_up_f
  --clean_up_file=$clean_up_file
  --time_to_sleep=$time_to_sleep
 </command>
 <inputs>
  <param name="check_run_complete_file" type="data" format="txt" label="check_run_complete_file"
   help="path to file containing a list of files that must exist to declare a run complete [REQUIRED]"/>
  <param name="check_run_complete_f" type="text" value="qiime.parallel.poller.basic_check_run_complete_f" label="check_run_complete_f"
   help="function which returns True when run is completed [default: qiime.parallel.poller.basic_check_run_complete_f]"/>
  <param name="process_run_results_f" type="text" value="qiime.parallel.poller.basic_process_run_results_f" label="process_run_results_f"
   help="function to be called when runs complete [default: qiime.parallel.poller.basic_process_run_results_f]"/>
  <param name="process_run_results_file" type="data" format="tabular" label="process_run_results_file"
   help="path to file containing a map of tmp filepaths which should be written to final output filepaths [default: ('NO', 'DEFAULT')]"/>
  <param name="clean_up_f" type="text" value="qiime.parallel.poller.basic_clean_up_f" label="clean_up_f"
   help="function called after processing result [default: qiime.parallel.poller.basic_clean_up_f]"/>
  <param name="clean_up_file" type="data" format="txt" label="clean_up_file"
   help="List of files and directories to remove after run [default: ('NO', 'DEFAULT')]"/>
  <param name="time_to_sleep" type="integer" value="60" label="time_to_sleep"
   help="time to wait between calls to status_callback_f (in seconds) [default: 60]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>