diff poller.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/poller.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,43 @@
+<tool id="poller" name="poller" version="1.2.0">
+ <description>Poller for parallel QIIME scripts.</description>
+ <requirements>
+  <requirement type="binary">poller.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  poller.py
+  --check_run_complete_file=$check_run_complete_file
+  --check_run_complete_f=$check_run_complete_f
+  --process_run_results_f=$process_run_results_f
+  --process_run_results_file=$process_run_results_file
+  --clean_up_f=$clean_up_f
+  --clean_up_file=$clean_up_file
+  --time_to_sleep=$time_to_sleep
+ </command>
+ <inputs>
+  <param name="check_run_complete_file" type="data" format="txt" label="check_run_complete_file"
+   help="path to file containing a list of files that must exist to declare a run complete [REQUIRED]"/>
+  <param name="check_run_complete_f" type="text" value="qiime.parallel.poller.basic_check_run_complete_f" label="check_run_complete_f"
+   help="function which returns True when run is completed [default: qiime.parallel.poller.basic_check_run_complete_f]"/>
+  <param name="process_run_results_f" type="text" value="qiime.parallel.poller.basic_process_run_results_f" label="process_run_results_f"
+   help="function to be called when runs complete [default: qiime.parallel.poller.basic_process_run_results_f]"/>
+  <param name="process_run_results_file" type="data" format="tabular" label="process_run_results_file"
+   help="path to file containing a map of tmp filepaths which should be written to final output filepaths [default: ('NO', 'DEFAULT')]"/>
+  <param name="clean_up_f" type="text" value="qiime.parallel.poller.basic_clean_up_f" label="clean_up_f"
+   help="function called after processing result [default: qiime.parallel.poller.basic_clean_up_f]"/>
+  <param name="clean_up_file" type="data" format="txt" label="clean_up_file"
+   help="List of files and directories to remove after run [default: ('NO', 'DEFAULT')]"/>
+  <param name="time_to_sleep" type="integer" value="60" label="time_to_sleep"
+   help="time to wait between calls to status_callback_f (in seconds) [default: 60]"/>
+ </inputs>
+ <outputs>
+  
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+