diff add_taxa.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/add_taxa.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,31 @@
+<tool id="add_taxa" name="add_taxa" version="1.2.0">
+ <description>Add taxa to OTU table</description>
+ <requirements>
+  <requirement type="binary">add_taxa.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  add_taxa.py
+  --otu_file=$otu_file
+  --taxonomy_file=$taxonomy_file
+  --output_file=$output_file
+  --id_map_file=$id_map_file
+ </command>
+ <inputs>
+  <param name="otu_file" type="data" format="txt" label="otu_file"
+   help="Path to read otu file [REQUIRED]"/>
+  <param name="taxonomy_file" type="data" format="txt" label="taxonomy_file"
+   help="Path to read taxonomy file [REQUIRED]"/>
+  <param name="id_map_file" type="data" format="tabular" label="id_map_file"
+   help="Path to read seq id to otu map file [default: ('NO', 'DEFAULT')]"/>
+ </inputs>
+ <outputs>
+  <data format="txt" name="output_file" label="${tool.name} on ${on_string}"/>
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+