view add_taxa.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="add_taxa" name="add_taxa" version="1.2.0">
 <description>Add taxa to OTU table</description>
 <requirements>
  <requirement type="binary">add_taxa.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  add_taxa.py
  --otu_file=$otu_file
  --taxonomy_file=$taxonomy_file
  --output_file=$output_file
  --id_map_file=$id_map_file
 </command>
 <inputs>
  <param name="otu_file" type="data" format="txt" label="otu_file"
   help="Path to read otu file [REQUIRED]"/>
  <param name="taxonomy_file" type="data" format="txt" label="taxonomy_file"
   help="Path to read taxonomy file [REQUIRED]"/>
  <param name="id_map_file" type="data" format="tabular" label="id_map_file"
   help="Path to read seq id to otu map file [default: ('NO', 'DEFAULT')]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_file" label="${tool.name} on ${on_string}"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>