diff merge_denoiser_output.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/merge_denoiser_output.xml	Sun Jul 17 10:30:11 2011 -0500
@@ -0,0 +1,35 @@
+<tool id="merge_denoiser_output" name="merge_denoiser_output" version="1.2.0">
+ <description>Merge the output of denoising step back into QIIME</description>
+ <requirements>
+  <requirement type="binary">merge_denoiser_output.py</requirement>
+ </requirements>
+ <command interpreter="python">
+  qiime_wrapper.py
+  --galaxy_tmpdir='$__new_file_path__'
+  merge_denoiser_output.py
+  --map_file=$map_file
+  --otu_picker_map_file=$otu_picker_map_file
+  --fasta_fp=$fasta_fp
+  --denoised_fasta_fp=$denoised_fasta_fp
+  --output_dir=$__new_file_path__
+ </command>
+ <inputs>
+  <param name="map_file" type="data" format="tabular" label="map_file"
+   help="path to denoiser cluster mapping file [REQUIRED]"/>
+  <param name="otu_picker_map_file" type="data" format="tabular" label="otu_picker_map_file"
+   help="path to OTU mapping file from OTU picker [REQUIRED]"/>
+  <param name="fasta_fp" type="data" format="fasta" label="fasta_fp"
+   help="path to FASTA file, output of split_libraries.py [REQUIRED]"/>
+  <param name="denoised_fasta_fp" type="data" format="fasta" label="denoised_fasta_fp"
+   help="path to denoised fasta file [REQUIRED]"/>
+ </inputs>
+ <outputs>
+  
+ </outputs>
+ <tests>
+ </tests>
+ <help>
+  
+ </help>
+</tool>
+