view submit_to_mgrast.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="submit_to_mgrast" name="submit_to_mgrast" version="1.2.1">
 <description>This script submits a FASTA file to MG-RAST</description>
 <requirements>
  <requirement type="binary">submit_to_mgrast.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  submit_to_mgrast.py
  --input_fasta_fp=$input_fasta_fp
  --web_key_auth=$web_key_auth
  --project_id=$project_id
  --output_dir=$__new_file_path__
 </command>
 <inputs>
  <param name="input_fasta_fp" type="data" format="fasta" label="input_fasta_fp"
   help="path to the input fasta file [REQUIRED]"/>
  <param name="web_key_auth" type="text"  label="web_key_auth"
   help="the web services authorization key from MG-RAST [REQUIRED]"/>
  <param name="project_id" type="text"  label="project_id"
   help="the title to be used for the project [REQUIRED]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>