view beta_significance.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="beta_significance" name="beta_significance" version="1.2.0">
 <description>This script runs any of a set of common tests to determine if a sample is statistically significantly different from another sample</description>
 <requirements>
  <requirement type="binary">beta_significance.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  beta_significance.py
  --input_path=$input_path
  --output_path=$output_path
  --significance_test=$significance_test
  --tree_path=$tree_path
  --num_iters=$num_iters
 </command>
 <inputs>
  <param name="input_path" type="text"  label="input_path"
   help="input otu table [REQUIRED]"/>
  <param name="significance_test" type="text"  label="significance_test"
   help="significance test to use, options are 'unweighted_unifrac', 'weighted_unifrac', or 'p-test' [REQUIRED]"/>
  <param name="tree_path" type="text"  label="tree_path"
   help="path to newick tree file, required for phylogenetic metrics [default: %default]"/>
  <param name="num_iters" type="integer" value="100" label="num_iters"
   help="number of monte carlo randomizations [default: 100]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_path"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>