view collate_alpha.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="collate_alpha" name="collate_alpha" version="1.2.0">
 <description>Collate alpha diversity results</description>
 <requirements>
  <requirement type="binary">collate_alpha.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  collate_alpha.py
  --input_path=$input_path
  --output_path=$output_path
  --example_path=$example_path
 </command>
 <inputs>
  <param name="input_path" type="text"  label="input_path"
   help="input path (a directory) [REQUIRED]"/>
  <param name="example_path" type="text"  label="example_path"
   help="example alpha_diversity analysis file, containing all samples and all metrics to be included in the collated result[Default: chosen automatically (see usage string)]"/>
 </inputs>
 <outputs>
  <data format="txt" name="output_path"/>
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>