view quality_scores_plot.xml @ 0:e5c3175506b7 default tip

Initial tool configs for qiime, most need work.

<tool id="quality_scores_plot" name="quality_scores_plot" version="1.2.1">
 <description>Generates histograms of sequence quality scores and number of nucleotides recorded at a particular index</description>
 <requirements>
  <requirement type="binary">quality_scores_plot.py</requirement>
 </requirements>
 <command interpreter="python">
  qiime_wrapper.py
  --galaxy_tmpdir='$__new_file_path__'
  quality_scores_plot.py
  --qual_fp=$qual_fp
  --output_dir=$__new_file_path__
  --score_min=$score_min
  --verbose
 </command>
 <inputs>
  <param name="qual_fp" type="data" format="qual" label="qual_fp"
   help="Quality score file used to generate histogram data. [REQUIRED]"/>
  <param name="score_min" type="text" value="25" label="score_min"
   help="Minimum quality score to be considered acceptable.  Used to draw dotted line on histogram for easy visualization of poor quality scores. [default: 25]"/>
 </inputs>
 <outputs>
  
 </outputs>
 <tests>
 </tests>
 <help>
  
 </help>
</tool>